Team:Paris Bettencourt/Project/Model


Modelling Group: Computationally model stain removal using enzymes

Goals

  • To make a computational model to analyze stain-enzyme dynamics
  • To find optimum parameters

BioBricks

  • BioBrick 1
  • BioBrick 2
  • BioBrick 3

Results

  • Developed a differential equation model to analyze stain dynamics
  • A computational approach using Gillespie algorithm
  • A computational approach using explicit finite difference method for three dimensional modelling

Methods

  • Matlab
  • ODE solvers
  • Gillespie Algorithm
  • Explicit Finite Difference method (FDM)

Abstract

Motivation and Background

Challenge: Modelling stain removal in a compact washing machine

A typical garment is composed of several square meters of fabric and a typical washing machine has a volme of 100 liters.

Quercetin strains degradation

Example figure box

Results

Model1: Ode-based

Model2: Gillespie Algorithm-based

Model3: 3D modelling using FDM


Methods

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Attributions

This project was done mostly by Jake Wintermute, Mislav Acman and Mani Sai Suryateja Jammalamadaka.

References

Centre for Research and Interdisciplinarity (CRI)
Faculty of Medicine Cochin Port-Royal, South wing, 2nd floor
Paris Descartes University
24, rue du Faubourg Saint Jacques
75014 Paris, France
+33 1 44 41 25 22/25
igem2016parisbettencourt@gmail.com
2016.igem.org