Difference between revisions of "Team:Tongji Shanghai"

Line 1: Line 1:
{{Team:Tongji_Shanghai/head}}
+
<!-- <!DOCTYPE html> -->
<html>
+
<html lang="en">
 +
<!--Important:clear page-->
 +
<script>    $('head').empty(); </script>
 +
<!--End clear page-->
 +
<head>
 +
    <meta charset="utf-8">
 +
    <title>iGEM Tongji 2014</title>
 +
    <meta name="viewport" content="width=device-width, initial-scale=1.0">
 +
    <style>
 +
  /*Clear existing style*/
  
<body id="adb">
+
 
 +
  #contentSub, #menubar, #footer-box, #siteSub, #catlinks, #search-controls, #p-logo, .printfooter, .firstHeading, .visualClear {
 +
    display:none;
 +
  }
 +
 
 +
  html, body {
 +
    width: auto !important;
 +
/*    overflow-x: hidden !important;*/
 +
    height: 100% !important;
 +
 
 +
  }
 +
  /*End claer*/
 +
 
 +
  /*Responsive SideBar Hidden*/
 +
  @media (max-width: 979px) {
 +
#NelsonSideBar{display: none;}
 +
  }
 +
  /*End Responsive SideBar Hidden*/
 +
</style>
 +
    <!-- Le styles -->
 +
  <link href="https://2014.igem.org/Team:Tongji/bootstrap_min_css?action=raw&ctype=text/css" rel="stylesheet">
 +
  <link href="https://2014.igem.org/Team:Tongji/bootstrap-responsive_min_css?action=raw&ctype=text/css" rel="stylesheet">
 +
  <link href="https://2014.igem.org/Team:Tongji/docs_css?action=raw&ctype=text/css" rel="stylesheet">
 +
<style>
 +
body{font-family:"ff-tisa-web-pro-1","ff-tisa-web-pro-2","Lucida Grande","Helvetica Neue",Helvetica,Arial,"Hiragino Sans GB","Hiragino Sans GB W3","Microsoft YaHei UI","Microsoft YaHei","WenQuanYi Micro Hei",sans-serif;}
 +
</style>
 +
    <link href="https://2014.igem.org/Team:Tongji/prettify_css?action=raw&ctype=text/css" rel="stylesheet">
 +
 
 +
 
 +
    <!-- Le HTML5 shim, for IE6-8 support of HTML5 elements -->
 +
    <!--[if lt IE 9]>
 +
      <script src="http://cdn.bootcss.com/html5shiv/3.7.0/html5shiv.min.js"></script>
 +
    <![endif]-->
 +
 
 +
 
 +
 
 +
  </head>
 +
 
 +
    <body data-spy="scroll" data-target=".bs-docs-sidebar">
 +
 
 +
    <!-- Navbar
 +
    ================================================== -->
 +
    <div class="navbar navbar-inverse navbar-fixed-top">
 +
      <div class="navbar-inner">
 +
        <div class="container">
 +
          <button type="button" class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse">
 +
            <span class="icon-bar"></span>
 +
            <span class="icon-bar"></span>
 +
            <span class="icon-bar"></span>
 +
          </button>
 +
 
 +
 
 +
 
 +
          <div class="nav-collapse collapse role="navigation>
 +
            <ul class="nav navbar-nav">
 +
              <li class="">
 +
                <a  href="https://2014.igem.org/Team:Tongji">iGEM Tongji 2014</a>
 +
              </li>
 +
              <li class="active">
 +
                <a  href="https://2014.igem.org/Team:Tongji/project">Project</a>
 +
              </li>
 +
              <li class="">
 +
                <a  href="https://2014.igem.org/Team:Tongji/human-practice">Human Practice</a>
 +
              </li>
 +
              <li class="">
 +
                <a  href="https://2014.igem.org/Team:Tongji/lab-archives">Lab Archives</a>
 +
              </li>
 +
              <li class="">
 +
                <a  href="https://2014.igem.org/Team:Tongji/safety">Safety</a>
 +
              </li>
 +
              <li class="">
 +
                <a  href="https://2014.igem.org/Team:Tongji/honors-room">Honors Room</a>
 +
              </li>
 +
 
 +
 
 +
 
 +
 
 +
              <li class="dropdown">
 +
                <a href="javascript:void(0)" class="dropdown-toggle" data-toggle="dropdown" >Language <b class="caret"></b></a>
 +
                <ul  class="dropdown-menu" >
 +
                  <li ><a  href="https://2014.igem.org/Team:Tongji/project"  t>English</a></li>
 +
                  <li role="presentation"><a href="https://2014.igem.org/Team:Tongji/project-zh">中文</a></li>
 +
                </ul>
 +
              </li>
 +
 
 +
              <li class="dropdown">
 +
                <a href="javascript:void(0)" class="dropdown-toggle" data-toggle="dropdown" >iGEM Bar <b class="caret"></b></a>
 +
                <ul  class="dropdown-menu " >
 +
                  <li ><a  href="/wiki/index.php?title=Talk:Team:Tongji/project&amp;action=edit&amp;redlink=1">Discussion</a></li>
 +
                  <li ><a  href="/wiki/index.php?title=Team:Tongji/project&amp;action=edit">Edit</a></li>
 +
                  <li ><a  href="/wiki/index.php?title=Team:Tongji/project&amp;action=history">History</a></li>
 +
                  <li ><a  href="/Special:MovePage/Team:Tongji/project">Move</a></li>
 +
                  <li ><a  href="/wiki/index.php?title=Team:Tongji/project&amp;action=watch">Watch</a></li>
 +
                  <li class="divider"></li>
 +
                  <li ><a href="/wiki/index.php?title=Special:UserLogin&amp;returnto=Team:Tongji">Login</a></li>
 +
                  <li ><a href="https://igem.org/User_Information">Account</a></li>
 +
                  <li class="divider"></li>
 +
                  <li><a href="https://igem.org/Main_Page"><img src="https://static.igem.org/mediawiki/2014/d/d6/Igemlogo_officiallogo-small.png"></a></li>
 +
                </ul>
 +
              </li>             
 +
 
 +
            </ul>
 +
          </div>
 +
        </div>
 +
      </div>
 +
    </div>
 +
 
 +
<!-- Subhead
 +
================================================== -->
 +
<header class="jumbotron subhead " id="overview">
 +
  <div class="container">
 +
    <h1>Project</h1>
 +
    <p class="lead"></p>
 +
  </div>
 +
</header>
 +
 
 +
 
 +
  <div class="container">
 +
 
 +
    <!-- Docs nav
 +
    ================================================== -->
 +
    <div class="row">
 +
      <div class="span3 bs-docs-sidebar" id="NelsonSideBar">
 +
        <ul class="nav nav-list bs-docs-sidenav">
 +
          <li><a href="#download-bootstrap"><i class="icon-chevron-right"></i> Abstract</a></li>
 +
          <li><a href="#file-structure"><i class="icon-chevron-right"></i> Story Board</a></li>
 +
          <li><a href="#contents"><i class="icon-chevron-right"></i> Prospective</a></li>
 +
        </ul>
 +
      </div>
 +
      <div class="span9">
 +
 
 +
 
 +
 
 +
        <!-- Download
 +
        ================================================== -->
 +
        <section id="download-bootstrap">
 +
          <div class="page-header">
 +
            <h1>Abstract</h1>
 +
          </div>
 +
         
 +
 
 +
          <p class="lead">  We build parts for decolor-assistant proteins (<em>man</em>A1, <em>arf</em>B, <em>xyn</em>B<a id="Jin6" href="#" rel="tooltip" data-placement="top" data-original-title="manA1 is putative to encode mannosidase, arfB encodes arabinofuranosidase and xynB encodes xylanase. They are all belong to hemicellulase."><sup><strong>Attention!</strong></sup></a>) to assemble decolor-assistant machines. Compared to existing decolor-assistant proteins, our proteins can work at high temperature and have synergistic effects, which may be useful in paper industry.</p>
 +
          <img src="https://static.igem.org/mediawiki/2014/5/5b/Decolorfour.png">
 
          
 
          
<div class="header" id="home">
+
 
 +
 
 +
        </section>
 +
 
 +
 
 +
 
 +
        <!-- File structure
 +
        ================================================== -->
 +
        <section id="file-structure">
 +
          <div class="page-header">
 +
            <h1>Story Board</h1>
 +
          </div>
 +
          <p class="lead"><em>man</em>A1, <em>arf</em>B, <em>xyn</em>B are three genes which respectively encoding <strong>hemicellulase</strong> enzyme. With help of these proteins, the paper pulp can be bleached by much less chemical reagent. Since less chemical reagent (especially the chlorinated chemicals) in bleaching can benefit the environment protection, nowadays enzyme-assisted bleaching method is getting popular in paper making industry.</p>
 +
          <p class="lead">  In our project, we build parts for three decolor-assistant proteins (<em>man</em>A1, <em>arf</em>B, <em>xyn</em>B) to assemble three decolor-assistant machines. The experiment results confirmed the function of these decolor-assistant proteins, especially their heat-resistant property and synergistic effect.</p>
 +
 
 +
          <p class="lead">  To better understand the bio-assistant trend in paper industry, we asked for a visit to local paper factory but they all refused us because of some commercial secrets. At the same time, we tightly communicate with several iGEM teams to improve our idea and appreciate their work. This is our first time to join the iGEM competition, and we hope we can have fun and get inspired in the following months.</p>
 +
 
 +
       
 +
          <p></p>
 +
        </section>
 +
 
 +
 
 +
        <!-- Contents
 +
        ================================================== -->
 +
        <section id="contents">
 +
          <div class="page-header">
 +
            <h1>Prospective</h1>
 +
          </div>
 +
         
 +
          <h2>Pulp And Paper Industry</h2>
 +
          <h3>Introduction</h3>
 +
          <p class="lead">Conventionally, the bleaching of digested pulp by chlorine compounds implies the generation of much adsorbable organic halogen (AOX) which is problematic due to its high toxicity and low biodegradability. Improper treatment and release of these hazardous waste could raise serious environmental and health problems. Finding solutions to reducing or replacing usage of those harmful compounds have aroused much concern.</p>
 +
 
 +
          <p class="lead">Since 1986<a id="Jin" href="#" rel="tooltip" data-placement="top" data-original-title="Bleaching with enzymes, Biotechnology in the pulp and paper industry, 1986, Viikari L et al."><sup>Ref</sup></a>, several types of hemicellulase have been employed as biotechnological alternative solutions in the bleaching of pulp to help lower the chlorine containing bleaching reagent consumption. Xylanase is a prominent representative. Lab scaled experiments have testified that bleaching process involving Xylanase treatment was rather promising (Shown as table below). Moreover, bleaching process involving xylanase treatment can also improve product performance and save chemical  expense<a id="Jin2" href="#" rel="tooltip" data-placement="top" data-original-title="Protein engineering of xylanase for pulp bleaching applications, 1998, White T et al."><sup>Ref</sup></a>.</p>
 +
 
 +
          <table class="table table-hover">
 +
            <thead>
 +
              <tr>
 +
                <th class="text-info ">Author and time</th>
 +
                <th class="text-info ">Bleach procedure</th>
 +
                <th class="text-info ">Pulp type</th>
 +
                <th class="text-info ">ClO<sub>2</sub> consumption reduced</th>
 +
              </tr>
 +
            </thead>
 +
            <tbody>
 +
              <tr>
 +
                <td><div>Viikari, 1986</div></td>
 +
                <td><div >X(DC)E</div></td>
 +
                <td><div >SWKP</div></td>
 +
                <td><div >25%</div></td>
 +
              </tr>
 +
              <tr>
 +
                <td><div>Shan, 2000</div></td>
 +
                <td><div >XD<sub>0</sub>ED<sub>1</sub>ED<sub>2</sub></div></td>
 +
                <td><div >HWKP-O</div></td>
 +
                <td><div >25%</div></td>
 +
              </tr>
 +
              <tr>
 +
                <td><div>Paice, 2004</div></td>
 +
                <td>XDE<sub>0</sub>D</td>
 +
                <td><div >HWKP</div></td>
 +
                <td><div >13.4%</div></td>
 +
              </tr>
 +
            </tbody>
 +
          </table>
 +
 
 +
 
 +
          <p class="lead ">The process of biobleach is simple, and does not require major alteration of the conventional flow path. After xylanase is mixed into the pulp and kept in a holding tank for 1-3 hours, the pulp is bleached in the normal way.</p>
 +
 
 +
          <blockquote>
 +
            <small>Flow Chart Of Paper Bleaching</small>
 +
            <img src="https://static.igem.org/mediawiki/2014/f/f6/Paperpulp3.png ">
 +
            <small>R.C. Kuhad, Ajay Singh, <em>Lignocellulose Biotechnology Future Prospects</em>, 2007</small> 
 
              
 
              
            <!--the former location of nav-->
+
          </blockquote>
           
+
 
<!--the former location of nav-->
+
          <p class="lead ">More than two decades have passed since the attempt of reducing pulp bleaching associated AOX emission has been made, yet this field of research still have many questions to ask and problems to solve. Researchers are still making efforts to optimize aspects of the biobleach method <a id="Jin3" href="#" rel="tooltip" data-placement="top" data-original-title="Xylanase and laccase based enzymatic Kraft pulp bleaching reduces adsorbable organic halogen (AOX) in bleach effluents: A pilot scale study, 2014, Abha Sharma et al"><sup>Ref</sup></a>.</p>
+
<div class="header-banner" id="adhb">
+
 
<!-- Top Navigation -->
+
 
<div class="container page-seperator">
+
          <p class="lead ">One of the most important aspects of the biobleach method is stability and efficiency of xylanase. It is easy to understand that xylanases from natural hosts are evolved for adaption to the environment, thus not all of them can be in good service for industrial conditions. Many researchers have been seeking a xylanase which can work under conventional pulp treatment conditions, such as high temperature and alkaline.</p>
<section class="color bgi">
+
 
<h3>Lorem Ipsum Simply A Dummy Text To Format Fonts And Paragraphs.</h3>
+
 
<p>lorem ipsum simply a dummy text to format fonts and paragraphs,consectetuer adipiscing elit, sed diam </p>
+
          <blockquote>
<button type="button" class="btn btn-warning but1">Read more</button>
+
            <p class="lead text-info">Availability of the enzyme that is cellulase-free, working at temperature <strong>above 80°C</strong> and <strong>pH >8.0</strong> would be very beneficial. In this respect, the thermostable and alkalistable xylanases have high potential in pulp bleaching process in paper industry.</p>
</section>
+
            <small>R.C. Kuhad, Ajay Singh, <em>Lignocellulose Biotechnology Future Prospects</em>, 2007</small>
<section class="col-3 ss-style-doublediagonal our-features">
+
            <small>Sierra <em>et al</em>, 1994</small>
<h1>our features</h1>
+
          </blockquote>  
<p>lorem ipsum simply a dummy text to format fonts and paragraphs</p>
+
 
<div class="column our-feat">
+
          <h3>Our Contribution</h3>
<span class="glyphicon glyphicon-road our-icons" aria-hidden="true"></span>
+
          <p class="lead">Three genes of interest, which designated as <em>xyn</em>B, <em>arf</em>B and <em>man</em>A1, were derived from a thermophilic bacteria <em>Clostridium stercorarium</em> DSM8532.</p>
<h3>Lorem ipsum</h3>
+
 
<p>Lorem Ipsum is simply dummy<br>text of the printing and typesetting </p>
+
 
</div>
+
 
<div class="column our-feat">
+
 
<span class="glyphicon glyphicon-phone our-icons" aria-hidden="true"></span>
+
          <p class="lead "> <em>xyn</em>B gene encodes a endo-1,4-beta-xylanase. We identified this enzyme as an impressive thermostable xylanase because it presented a high activity at high temperature even up to 94.7°C! Since time is limited, other properties (such as synergistic effect and alkalistability) of this enzyme still awaits further validation.</p>
<h3>Lorem ipsum</h3>
+
 
<p>Lorem Ipsum is simply dummy<br> text of the printing and typesetting </p>
+
          <p class="lead "><em>arf</em>B gene encodes an alpha-L-arabinofuranosidase, which has been reported as a thermoactive enzyme with arabinoxylan debranching activity, and is potential for biobleaching<a id="Jin4" href="#" rel="tooltip" data-placement="top" data-original-title="Debranching of arabinoxylan: properties of the thermoactive recombinant K-L-arabinofuranosidase from Clostridium stercorarium (ArfB), 1995, Schwarz et al."><sup>Ref</sup></a>.</p>
</div>
+
 
<div class="column our-feat">
+
          <p class="lead "> <em>man</em>A1 gene, encoding a putative mannan endo-1,4-beta-mannosidase, was identified by complete genome sequencing of <em>Clostridium stercorarium</em> Strain DSM 8532. We construced this gene expression vector to make it expressed in <em>E.coli</em>. The mannosidase activity of this gene was confirmed by our experimental evidences. Given that other mannosidases have been reported to be useful in biobleaching, this enzyme is likely to be a candidate for industrial biobleach agent. Especially considering the thermophilic property of this gene, it could potentially be applied in paper pulp biobleeching.</p>
<span class="glyphicon glyphicon-scale our-icons" aria-hidden="true"></span>
+
 
<h3>Lorem ipsum</h3>
+
 
<p>Lorem Ipsum is simply dummy<br>text of the printing and typesetting </p>
+
          <h2>Future Energy Resource</h2>
</div>
+
          <p class="lead ">Besides being useful in paper industry, these hemicellulases might be able to help with solving energy problem.</p>
<div class="clearfix"></div>
+
          <p class="lead ">Lignocellulosic biomass is regarded as a very promising resource of fuel. The conversion is based on pretreatment of raw material to remove unfermantable components such as lignin, and this is exactly what the hemicellulases are capable of.</p>
</section>
+
          <p class="lead ">In fact, someone had already used xylanase to assemble a pretreatment machine<a id="Jin5" href="#" rel="tooltip" data-placement="top" data-original-title="Deconstruction of Lignocellulose into Soluble Sugars by Native and Designer Cellulosomes, 2012, Morais et al."><sup>Ref</sup></a>.</p>
</div>
+
 
</div>
+
 
<div class="our-work" id="our-work">
+
 
<div class="container">
+
 
<h2>our work</h2>
+
    
<p>lorem ipsum simply a dummy text to format fonts and paragraphs</p>
+
          <p class="lead">Therefore, to the best of our knowledge, our project may be beneficial to industrial pulp bleaching and future energy resource development.</p>
<div class="gallery-bottom">
+
 
<div class="col-md-4 bottom-gallery">
+
 
<a href="https://static.igem.org/mediawiki/2016/4/4b/T--Tongji_Shanghai--IMG_3.jpg" rel="title" class="b-link-stripe b-animate-go  thickbox">
+
         
<img class="img-responsive" src="https://static.igem.org/mediawiki/2016/4/4b/T--Tongji_Shanghai--IMG_3.jpg" />
+
        </section>
<div class="b-wrapper">
+
       
<h3 class="b-animate b-from-left    b-delay03 ">
+
 
<span class="txt">Lorem</span>
+
 
<span class="glyphicon glyphicon-arrow-right gal-icn" aria-hidden="true"></span>
+
 
</h3>
+
 
</div>
+
      </div>
</a>
+
    </div>
</div>
+
 
<div class="col-md-4 bottom-gallery">
+
  </div>
<a href="https://static.igem.org/mediawiki/2016/f/f5/T--Tongji_Shanghai--IMG_1.jpg" rel="title" class="b-link-stripe b-animate-go  thickbox">
+
 
<img class="img-responsive" src="https://static.igem.org/mediawiki/2016/f/f5/T--Tongji_Shanghai--IMG_1.jpg" />
+
 
<div class="b-wrapper">
+
 
<h3 class="b-animate b-from-left    b-delay03 ">
+
    <!-- Footer
<span class="txt">Lorem</span>
+
    ================================================== -->
<span class="glyphicon glyphicon-arrow-right gal-icn" aria-hidden="true"></span>
+
    <footer class="footer">
</h3>
+
      <div class="container">
</div>
+
        <p>Tongji University, 2014</p>
</a>
+
       
</div>
+
      </div>
<div class="col-md-4 bottom-gallery">
+
    </footer>
<a href="https://static.igem.org/mediawiki/2016/6/61/T--Tongji_Shanghai--IMG_5.jpg" rel="title" class="b-link-stripe b-animate-go  thickbox">
+
 
<img class="img-responsive" src="https://static.igem.org/mediawiki/2016/6/61/T--Tongji_Shanghai--IMG_5.jpg" />
+
 
<div class="b-wrapper">
+
 
<h3 class="b-animate b-from-left    b-delay03 ">
+
    <!-- Le javascript
<span class="txt">Lorem</span>
+
    ================================================== -->
<span class="glyphicon glyphicon-arrow-right gal-icn" aria-hidden="true"></span>
+
    <!-- Placed at the end of the document so the pages load faster -->
</h3>
+
   
</div>
+
    <script src="https://2014.igem.org/Team:Tongji/jquery_min_js?action=raw"></script>
</a>
+
    <script src="https://2014.igem.org/Team:Tongji/bootstrap_min_js?action=raw"></script>
</div>
+
 
<div class="col-md-4 bottom-gallery">
+
    <script src="https://2014.igem.org/Team:Tongji/holder_min_js?action=raw"></script>
<a href="https://static.igem.org/mediawiki/2016/7/78/T--Tongji_Shanghai--IMG_2.jpg" rel="title" class="b-link-stripe b-animate-go  thickbox">
+
    <script src="https://2014.igem.org/Team:Tongji/prettify_js?action=raw"></script>
<img class="img-responsive" src="https://static.igem.org/mediawiki/2016/7/78/T--Tongji_Shanghai--IMG_2.jpg" />
+
 
<div class="b-wrapper">
+
    <script src="https://2014.igem.org/Team:Tongji/application_js?action=raw"></script>
<h3 class="b-animate b-from-left    b-delay03 ">
+
 
<span class="txt">Lorem</span>
+
<script>
<span class="glyphicon glyphicon-arrow-right gal-icn" aria-hidden="true"></span>
+
    $(function ()
</h3>
+
    { $("#Jin").tooltip();
</div>
+
    });
</a>
+
    $(function ()
</div>
+
    { $("#Jin2").tooltip();
<div class="col-md-4 bottom-gallery">
+
    });
<a href="https://static.igem.org/mediawiki/2016/e/ef/T--Tongji_Shanghai--IMG_4.jpg" rel="title" class="b-link-stripe b-animate-go  thickbox">
+
    $(function ()
<img class="img-responsive" src="https://static.igem.org/mediawiki/2016/e/ef/T--Tongji_Shanghai--IMG_4.jpg" />
+
    { $("#Jin3").tooltip();
<div class="b-wrapper">
+
    });
<h3 class="b-animate b-from-left   b-delay03 ">
+
    $(function ()
<span class="txt">Lorem</span>
+
    { $("#Jin4").tooltip();
<span class="glyphicon glyphicon-arrow-right gal-icn" aria-hidden="true"></span>
+
    });
</h3>
+
    $(function ()
</div>
+
    { $("#Jin5").tooltip();
</a>
+
    });
</div>
+
    $(function ()
<div class="col-md-4 bottom-gallery">
+
    { $("#Jin6").tooltip();
<a href="https://static.igem.org/mediawiki/2016/7/71/T--Tongji_Shanghai--IMG_6.jpg" rel="title" class="b-link-stripe b-animate-go  thickbox">
+
    });
<img class="img-responsive" src="https://static.igem.org/mediawiki/2016/7/71/T--Tongji_Shanghai--IMG_6.jpg" />
+
</script>
<div class="b-wrapper">
+
 
<h3 class="b-animate b-from-left    b-delay03 ">
+
  </body>
<span class="txt">Lorem</span>
+
<span class="glyphicon glyphicon-arrow-right gal-icn" aria-hidden="true"></span>
+
</h3>
+
</div>
+
</a>
+
</div>
+
<div class="clearfix"></div>
+
<script src="https://2016.igem.org/Team:Tongji_Shanghai/javascript/TJjquery-chocolat?action=raw&ctype=text/javascript"></script>
+
<link rel="stylesheet" href="https://2016.igem.org/Team:Tongji_Shanghai/css/TJchocolat?action=raw&ctype=text/css" type="text/css" media="screen" charset="utf-8">
+
<!--light-box-files -->
+
<script type="text/javascript" charset="utf-8">
+
$(function() {
+
$('.bottom-gallery a').Chocolat();
+
});
+
</script>
+
</div>
+
<div class="testimonials">
+
<h3>Testimonials</h3>
+
<p>lorem ipsum simply a dummy text to format fonts and paragraphs</p>
+
<div class="test-box">
+
<q>Lorem Ipsum is simply dummy text of the printing and typesetting industry.Lorem Ipsum has been the industry's standard dummy text </q>
+
<a href="#" class="left">-Adam</a>
+
<div class="clearfix"></div>
+
<span><img src="https://static.igem.org/mediawiki/2016/6/64/T--Tongji_Shanghai--half-arrow.png"></span>
+
</div>
+
</div>
+
</div>
+
</div>
+
<section class="slider">
+
<div class="container">
+
<div class="flexslider">
+
<ul class="slides">
+
<li>
+
<div class="banner-info">
+
  <h3>Our latest feeds</h3>
+
  <h4><span class="m_2">"</span> lorem ipsum simply a dummy text to format fonts and paragraphs<span class="m_2"> "</span></h4>
+
  <p>Lorem ipsum dolor sit amet, consectetuer adipiscing elit, sed diam nonummy nibh euismod tincidunt ut laoreet dolore magna aliquam erat volutpat. Ut wisi enim ad minim veniam, quis nostrud exerci tation ullamcorper suscipit lobortis nisl ut aliquip ex ea commodo consequat. Duis autem vel eum iriure dolor in hendrerit in vulputate velit esse molestie consequat, vel illum dolore eu feugiat nulla facilisis at vero eros et accumsan et iusto odio dignissim qui blandit praesent.</p>
+
  <h5><a href="#">Adam Chamler ,</a>Dateratr since 2014</h5>
+
</div>
+
</li>
+
<li>
+
<div class="banner-info">
+
  <h3>Our latest feeds</h3>
+
  <h4><span class="m_2">"</span> lorem ipsum simply a dummy text to format fonts and paragraphs<span class="m_2"> "</span></h4>
+
  <p>Lorem ipsum dolor sit amet, consectetuer adipiscing elit, sed diam nonummy nibh euismod tincidunt ut laoreet dolore magna aliquam erat volutpat. Ut wisi enim ad minim veniam, quis nostrud exerci tation ullamcorper suscipit lobortis nisl ut aliquip ex ea commodo consequat. Duis autem vel eum iriure dolor in hendrerit in vulputate velit esse molestie consequat, vel illum dolore eu feugiat nulla facilisis at vero eros et accumsan et iusto odio dignissim qui blandit praesent.</p>
+
  <h5><a href="#">Adam Chamler ,</a>Dateratr since 2014</h5>
+
</div>
+
</li>
+
<li>
+
<div class="banner-info">
+
  <h3>Our latest feeds</h3>
+
  <h4><span class="m_2">"</span> lorem ipsum simply a dummy text to format fonts and paragraphs<span class="m_2"> "</span></h4>
+
  <p>Lorem ipsum dolor sit amet, consectetuer adipiscing elit, sed diam nonummy nibh euismod tincidunt ut laoreet dolore magna aliquam erat volutpat. Ut wisi enim ad minim veniam, quis nostrud exerci tation ullamcorper suscipit lobortis nisl ut aliquip ex ea commodo consequat. Duis autem vel eum iriure dolor in hendrerit in vulputate velit esse molestie consequat, vel illum dolore eu feugiat nulla facilisis at vero eros et accumsan et iusto odio dignissim qui blandit praesent.</p>
+
  <h5><a href="#">Adam Chamler ,</a>Dateratr since 2014</h5>
+
</div>
+
</li>
+
</ul>
+
</div>
+
</div>
+
<!-- FlexSlider -->
+
               
+
                <!--attention-->
+
  <script defer src="https://2016.igem.org/Team:Tongji_Shanghai/javascript/TJjquery-flexslider?action=raw&ctype=text/javascript"></script>
+
                <!--attention-->
+
               
+
  <script type="text/javascript">
+
$(function(){
+
  SyntaxHighlighter.all();
+
});
+
$(window).load(function(){
+
  $('.flexslider').flexslider({
+
animation: "slide",
+
start: function(slider){
+
  $('body').removeClass('loading');
+
}
+
  });
+
});
+
  </script>
+
<!-- FlexSlider -->
+
</section>
+
            <div class="copyrights">Collect from <a href="http://www.cssmoban.com/" >企业网站模板</a></div>
+
<div class="subscribe-label">
+
<div class="container">
+
<div class="sub-cont">
+
<div class="col-md-6">
+
<h3>Subscribe to our newsletter</h3>
+
</div>
+
<div class="col-md-6">
+
<form>
+
<input class="mail" type="text" name="email" value="E mail" onFocus="this.value = '';" onBlur="if (this.value == '') {this.value = 'E mail';}">
+
<button type="button" class="btn btn-warning sub-btn">Notify</button>
+
</form>
+
</div>
+
<div class="clearfix"></div>
+
</div>
+
</div>
+
</div>
+
<div class="social-feeds">
+
<div class="container">
+
<div class="wmuSlider example1 section" id="section-1">
+
<article style="position: absolute; width: 100%; opacity: 0;">  
+
  <div class="bottom-slide">
+
<img src="./images/twitter.png" alt="" />
+
<p>Great pixel perfect template which suites any needs. Some subheader text goes here.<br>Lorem ipsum dolor sit amet, consectetuer adipiscing elit, </p>
+
</div>
+
</article>
+
<article style="position: absolute; width: 100%; opacity: 0;">  
+
<div class="bottom-slide">
+
<img src="./images/twitter.png" alt="" />
+
<p>Suites any needs great pixel perfect template which . Some subheader text goes here.<br>Lorem ipsum dolor sit amet, consectetuer adipiscing elit, </p>
+
</div>
+
</article>
+
<article style="position: absolute; width: 100%; opacity: 0;">
+
<div class="bottom-slide">
+
<img src="https://static.igem.org/mediawiki/2016/c/cd/T--Tongji_Shanghai--twitter.png" alt="" />
+
<p>Template which suites great pixel perfect  any needs. Some subheader text goes here.<br>Lorem ipsum dolor sit amet, consectetuer adipiscing elit, </p>
+
</div>
+
</article>
+
<ul class="wmuSliderPagination">
+
<li><a href="#" class="">0</a></li>
+
<li><a href="#" class="">1</a></li>
+
<li><a href="#" class="">2</a></li>
+
</ul>
+
</div>
+
<!-- script -->
+
<script src="https://2016.igem.org/Team:Tongji_Shanghai/javascript/TJjquery-wmuSlider?action=raw&ctype=text/javascript"></script>  
+
<script>
+
$('.example1').wmuSlider();        
+
</script>
+
<!-- script -->
+
</div>
+
</div>
+
<div class="footer">
+
<div class="container">
+
<div class="social">
+
<ul>
+
<li><a href="#" class="face"></a></li>
+
<li><a href="#" class="twit"></a></li>
+
<li><a href="#" class="insta"></a></li>
+
<li><a href="#" class="gplus"></a></li>
+
<li><a href="#" class="dribl"></a></li>
+
</ul>
+
</div>
+
+
</div>
+
</div>
+
<a href="#home" id="toTop" class="scroll" style="display: block;"> <span id="toTopHover" style="opacity: 1;"> </span></a>
+
</body>
+
 
</html>
 
</html>

Revision as of 05:35, 9 September 2016

iGEM Tongji 2014

Project

We build parts for decolor-assistant proteins (manA1, arfB, xynBAttention!) to assemble decolor-assistant machines. Compared to existing decolor-assistant proteins, our proteins can work at high temperature and have synergistic effects, which may be useful in paper industry.

manA1, arfB, xynB are three genes which respectively encoding hemicellulase enzyme. With help of these proteins, the paper pulp can be bleached by much less chemical reagent. Since less chemical reagent (especially the chlorinated chemicals) in bleaching can benefit the environment protection, nowadays enzyme-assisted bleaching method is getting popular in paper making industry.

In our project, we build parts for three decolor-assistant proteins (manA1, arfB, xynB) to assemble three decolor-assistant machines. The experiment results confirmed the function of these decolor-assistant proteins, especially their heat-resistant property and synergistic effect.

To better understand the bio-assistant trend in paper industry, we asked for a visit to local paper factory but they all refused us because of some commercial secrets. At the same time, we tightly communicate with several iGEM teams to improve our idea and appreciate their work. This is our first time to join the iGEM competition, and we hope we can have fun and get inspired in the following months.

Pulp And Paper Industry

Introduction

Conventionally, the bleaching of digested pulp by chlorine compounds implies the generation of much adsorbable organic halogen (AOX) which is problematic due to its high toxicity and low biodegradability. Improper treatment and release of these hazardous waste could raise serious environmental and health problems. Finding solutions to reducing or replacing usage of those harmful compounds have aroused much concern.

Since 1986Ref, several types of hemicellulase have been employed as biotechnological alternative solutions in the bleaching of pulp to help lower the chlorine containing bleaching reagent consumption. Xylanase is a prominent representative. Lab scaled experiments have testified that bleaching process involving Xylanase treatment was rather promising (Shown as table below). Moreover, bleaching process involving xylanase treatment can also improve product performance and save chemical expenseRef.

Author and time Bleach procedure Pulp type ClO2 consumption reduced
Viikari, 1986
X(DC)E
SWKP
25%
Shan, 2000
XD0ED1ED2
HWKP-O
25%
Paice, 2004
XDE0D
HWKP
13.4%

The process of biobleach is simple, and does not require major alteration of the conventional flow path. After xylanase is mixed into the pulp and kept in a holding tank for 1-3 hours, the pulp is bleached in the normal way.

Flow Chart Of Paper Bleaching R.C. Kuhad, Ajay Singh, Lignocellulose Biotechnology Future Prospects, 2007

More than two decades have passed since the attempt of reducing pulp bleaching associated AOX emission has been made, yet this field of research still have many questions to ask and problems to solve. Researchers are still making efforts to optimize aspects of the biobleach method Ref.

One of the most important aspects of the biobleach method is stability and efficiency of xylanase. It is easy to understand that xylanases from natural hosts are evolved for adaption to the environment, thus not all of them can be in good service for industrial conditions. Many researchers have been seeking a xylanase which can work under conventional pulp treatment conditions, such as high temperature and alkaline.

Availability of the enzyme that is cellulase-free, working at temperature above 80°C and pH >8.0 would be very beneficial. In this respect, the thermostable and alkalistable xylanases have high potential in pulp bleaching process in paper industry.

R.C. Kuhad, Ajay Singh, Lignocellulose Biotechnology Future Prospects, 2007 Sierra et al, 1994

Our Contribution

Three genes of interest, which designated as xynB, arfB and manA1, were derived from a thermophilic bacteria Clostridium stercorarium DSM8532.

xynB gene encodes a endo-1,4-beta-xylanase. We identified this enzyme as an impressive thermostable xylanase because it presented a high activity at high temperature even up to 94.7°C! Since time is limited, other properties (such as synergistic effect and alkalistability) of this enzyme still awaits further validation.

arfB gene encodes an alpha-L-arabinofuranosidase, which has been reported as a thermoactive enzyme with arabinoxylan debranching activity, and is potential for biobleachingRef.

manA1 gene, encoding a putative mannan endo-1,4-beta-mannosidase, was identified by complete genome sequencing of Clostridium stercorarium Strain DSM 8532. We construced this gene expression vector to make it expressed in E.coli. The mannosidase activity of this gene was confirmed by our experimental evidences. Given that other mannosidases have been reported to be useful in biobleaching, this enzyme is likely to be a candidate for industrial biobleach agent. Especially considering the thermophilic property of this gene, it could potentially be applied in paper pulp biobleeching.

Future Energy Resource

Besides being useful in paper industry, these hemicellulases might be able to help with solving energy problem.

Lignocellulosic biomass is regarded as a very promising resource of fuel. The conversion is based on pretreatment of raw material to remove unfermantable components such as lignin, and this is exactly what the hemicellulases are capable of.

In fact, someone had already used xylanase to assemble a pretreatment machineRef.

Therefore, to the best of our knowledge, our project may be beneficial to industrial pulp bleaching and future energy resource development.

Tongji University, 2014