Difference between revisions of "Team:Queens Canada/Notebook"
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<body><div class="printable-container u-small-padding-top" style="min-width:420px;"><div class="printable-page-container"><div class="noteEditor mediocre" tabindex="-1"><div><noscript></noscript><noscript></noscript><noscript></noscript></div><div class="noteEditor-container"><div class="u-cursor-text noteEditor-catcher u-disable-margin-collapse dnd-drop-container"><div class="noteEditor-contentWrapper"><h1 class="mediocre-titleEditor"><div class="editable selectable is-locked" contenteditable="false" data-allow-multiline="false" data-cid="notetitleeditor" data-index="0">Hello World!</div></h1><div><div><b>Project:</b> iGem Test Export</div><div><b>Authors:</b> Louis Pasteur</div><div><b>Date:</b> 2016-09-20</div></div><div class="editor" data-editor="notes"><div class="hiddenFocusEditable js-focusBearer" contenteditable="true" tabindex="-1"></div><div class="daySeparator"><div class="daySeparator-inputWrapper"><input class="daySeparator-inputWrapper-hiddenInput" type="input"/></div><span class="daySeparator-date">Tuesday, 9/20</span><div class="daySeparator-line"></div></div><div class="mediocre-item is-text"><div class="mediocre-noteEditable multi-editable is-paragraph"><div class="mediocre-noteEditable-indenter" style="width:0;"></div><div class="editable selectable is-locked" contenteditable="false" data-allow-at-search="true" data-allow-multiline="false" data-cid="note-part6" data-index="0" style="margin-left:0;">Here's a sample experiment to show you how notebook entries work.</div></div></div><div class="mediocre-item is-text"><div class="mediocre-noteEditable multi-editable is-paragraph"><div class="mediocre-noteEditable-indenter" style="width:0;"></div><div class="editable selectable is-locked" contenteditable="false" data-allow-at-search="true" data-allow-multiline="false" data-cid="note-part7" data-index="1" style="margin-left:0;"></div></div></div><div class="mediocre-item is-text"><div class="mediocre-noteEditable multi-editable is-paragraph"><div class="mediocre-noteEditable-indenter" style="width:0;"></div><div class="editable selectable is-locked" contenteditable="false" data-allow-at-search="true" data-allow-multiline="false" data-cid="note-part8" data-index="2" style="margin-left:0;">Use <b>tables with formulas</b> to make a master mix calculation. <b>Edit the number of reactions</b> to see it in action!</div></div></div><div class="mediocre-item is-captionedTable"><div><div class="hiddenFocusEditable editable" contenteditable="true" data-cid="note-part9-item" data-formattable="true" data-index="3" data-subindex="item"></div><div class="mediocre-captionEditable mediocre-captionEditable--table"><div class="component-top-row component-row"><div class="mediocre-captionEditable-cell"></div><div class="mediocre-captionEditable-cell mediocre-captionEditable-component" style="width:100%;"><div class="note-item-wrapper"><div class="mediocre-tableEditable" data-formattable="true" data-index="3" data-subindex="cell" style="margin-left:0;margin-right:0;"><div><noscript></noscript><noscript></noscript><noscript></noscript><noscript></noscript></div><div class="hiddenFocusEditable js-focusBearer" contenteditable="true" tabindex="-1"></div><div class="hiddenFocusEditable editable" contenteditable="true" data-cid="note-part9-table" data-formattable="true" data-index="3" data-subindex="table"></div><div class="mediocre-tableEditable-scrollArea"><div class="mediocre-tableEditable-tableWrapper" style="padding-left:0;"><div class="mediocre-tableEditable-border multi-editable" style="left:-10px;width:365px;"></div><table class="mediocre-tableEditable-table u-small-spacing-right" style="top:0;width:345px;"><colgroup><col style="width:45px;"></col><col style="width:100px;"></col><col style="width:100px;"></col><col style="width:100px;"></col></colgroup><tbody><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-maximizeButton u-no-mouse-target"></td><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--col"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">A</span></div></td><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--col"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">B</span></div></td><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--col"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">C</span></div></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">1</span></div></td><td class="cell is-text is-bold is-alignLeft" data-cid="table-note-part9-0-0" data-namespace="table-ns1281"><span>Number of Reactions</span></td><td class="cell is-value is-bold is-alignRight" data-cid="table-note-part9-0-1" data-namespace="table-ns1281"><span>80</span></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-0-2" data-namespace="table-ns1281"><span></span></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">2</span></div></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-1-0" data-namespace="table-ns1281"><span>Component</span></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-1-1" data-namespace="table-ns1281"><span>Amount (uL/tube)</span></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-1-2" data-namespace="table-ns1281"><span>Master Mix (uL)</span></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">3</span></div></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-2-0" data-namespace="table-ns1281"><span>Water</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-2-1" data-namespace="table-ns1281"><span>16</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-2-2" data-namespace="table-ns1281"><span>1280</span></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">4</span></div></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-3-0" data-namespace="table-ns1281"><span>10x Buffer</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-3-1" data-namespace="table-ns1281"><span>2</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-3-2" data-namespace="table-ns1281"><span>160</span></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">5</span></div></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-4-0" data-namespace="table-ns1281"><span>Enzyme</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-4-1" data-namespace="table-ns1281"><span>1</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-4-2" data-namespace="table-ns1281"><span>80</span></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">6</span></div></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-5-0" data-namespace="table-ns1281"><span>Master Mix Total</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-5-1" data-namespace="table-ns1281"><span>19</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-5-2" data-namespace="table-ns1281"><span>1520</span></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">7</span></div></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-6-0" data-namespace="table-ns1281"><span>Template DNA</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-6-1" data-namespace="table-ns1281"><span>1</span></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-6-2" data-namespace="table-ns1281"><span></span></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">8</span></div></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-7-0" data-namespace="table-ns1281"><span>Reaction Total</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-7-1" data-namespace="table-ns1281"><span>20</span></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-7-2" data-namespace="table-ns1281"><span></span></td></tr></tbody></table></div></div><div class="mediocre-tableEditable-titleBarWrapper" style="left:0;"><div class="mediocre-tableEditable-titleBar"><div class="u-ellipsis-text mediocre-tableEditable-tableName">Table1</div></div></div></div></div></div><div class="mediocre-captionEditable-cell"></div></div><div class="component-bottom-row component-row"><div class="mediocre-captionEditable-cell"></div><div class="mediocre-captionEditable-cell"><div class="mediocre-captionEditable-caption--bottom multi-editable mediocre-captionEditable-caption editable selectable is-locked" contenteditable="false" data-allow-at-search="true" data-allow-multiline="true" data-cid="note-part9" data-index="3" style="width:365px;margin-left:0;"> | <body><div class="printable-container u-small-padding-top" style="min-width:420px;"><div class="printable-page-container"><div class="noteEditor mediocre" tabindex="-1"><div><noscript></noscript><noscript></noscript><noscript></noscript></div><div class="noteEditor-container"><div class="u-cursor-text noteEditor-catcher u-disable-margin-collapse dnd-drop-container"><div class="noteEditor-contentWrapper"><h1 class="mediocre-titleEditor"><div class="editable selectable is-locked" contenteditable="false" data-allow-multiline="false" data-cid="notetitleeditor" data-index="0">Hello World!</div></h1><div><div><b>Project:</b> iGem Test Export</div><div><b>Authors:</b> Louis Pasteur</div><div><b>Date:</b> 2016-09-20</div></div><div class="editor" data-editor="notes"><div class="hiddenFocusEditable js-focusBearer" contenteditable="true" tabindex="-1"></div><div class="daySeparator"><div class="daySeparator-inputWrapper"><input class="daySeparator-inputWrapper-hiddenInput" type="input"/></div><span class="daySeparator-date">Tuesday, 9/20</span><div class="daySeparator-line"></div></div><div class="mediocre-item is-text"><div class="mediocre-noteEditable multi-editable is-paragraph"><div class="mediocre-noteEditable-indenter" style="width:0;"></div><div class="editable selectable is-locked" contenteditable="false" data-allow-at-search="true" data-allow-multiline="false" data-cid="note-part6" data-index="0" style="margin-left:0;">Here's a sample experiment to show you how notebook entries work.</div></div></div><div class="mediocre-item is-text"><div class="mediocre-noteEditable multi-editable is-paragraph"><div class="mediocre-noteEditable-indenter" style="width:0;"></div><div class="editable selectable is-locked" contenteditable="false" data-allow-at-search="true" data-allow-multiline="false" data-cid="note-part7" data-index="1" style="margin-left:0;"></div></div></div><div class="mediocre-item is-text"><div class="mediocre-noteEditable multi-editable is-paragraph"><div class="mediocre-noteEditable-indenter" style="width:0;"></div><div class="editable selectable is-locked" contenteditable="false" data-allow-at-search="true" data-allow-multiline="false" data-cid="note-part8" data-index="2" style="margin-left:0;">Use <b>tables with formulas</b> to make a master mix calculation. <b>Edit the number of reactions</b> to see it in action!</div></div></div><div class="mediocre-item is-captionedTable"><div><div class="hiddenFocusEditable editable" contenteditable="true" data-cid="note-part9-item" data-formattable="true" data-index="3" data-subindex="item"></div><div class="mediocre-captionEditable mediocre-captionEditable--table"><div class="component-top-row component-row"><div class="mediocre-captionEditable-cell"></div><div class="mediocre-captionEditable-cell mediocre-captionEditable-component" style="width:100%;"><div class="note-item-wrapper"><div class="mediocre-tableEditable" data-formattable="true" data-index="3" data-subindex="cell" style="margin-left:0;margin-right:0;"><div><noscript></noscript><noscript></noscript><noscript></noscript><noscript></noscript></div><div class="hiddenFocusEditable js-focusBearer" contenteditable="true" tabindex="-1"></div><div class="hiddenFocusEditable editable" contenteditable="true" data-cid="note-part9-table" data-formattable="true" data-index="3" data-subindex="table"></div><div class="mediocre-tableEditable-scrollArea"><div class="mediocre-tableEditable-tableWrapper" style="padding-left:0;"><div class="mediocre-tableEditable-border multi-editable" style="left:-10px;width:365px;"></div><table class="mediocre-tableEditable-table u-small-spacing-right" style="top:0;width:345px;"><colgroup><col style="width:45px;"></col><col style="width:100px;"></col><col style="width:100px;"></col><col style="width:100px;"></col></colgroup><tbody><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-maximizeButton u-no-mouse-target"></td><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--col"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">A</span></div></td><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--col"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">B</span></div></td><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--col"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">C</span></div></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">1</span></div></td><td class="cell is-text is-bold is-alignLeft" data-cid="table-note-part9-0-0" data-namespace="table-ns1281"><span>Number of Reactions</span></td><td class="cell is-value is-bold is-alignRight" data-cid="table-note-part9-0-1" data-namespace="table-ns1281"><span>80</span></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-0-2" data-namespace="table-ns1281"><span></span></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">2</span></div></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-1-0" data-namespace="table-ns1281"><span>Component</span></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-1-1" data-namespace="table-ns1281"><span>Amount (uL/tube)</span></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-1-2" data-namespace="table-ns1281"><span>Master Mix (uL)</span></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">3</span></div></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-2-0" data-namespace="table-ns1281"><span>Water</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-2-1" data-namespace="table-ns1281"><span>16</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-2-2" data-namespace="table-ns1281"><span>1280</span></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">4</span></div></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-3-0" data-namespace="table-ns1281"><span>10x Buffer</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-3-1" data-namespace="table-ns1281"><span>2</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-3-2" data-namespace="table-ns1281"><span>160</span></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">5</span></div></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-4-0" data-namespace="table-ns1281"><span>Enzyme</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-4-1" data-namespace="table-ns1281"><span>1</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-4-2" data-namespace="table-ns1281"><span>80</span></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">6</span></div></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-5-0" data-namespace="table-ns1281"><span>Master Mix Total</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-5-1" data-namespace="table-ns1281"><span>19</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-5-2" data-namespace="table-ns1281"><span>1520</span></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">7</span></div></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-6-0" data-namespace="table-ns1281"><span>Template DNA</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-6-1" data-namespace="table-ns1281"><span>1</span></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-6-2" data-namespace="table-ns1281"><span></span></td></tr><tr><td class="mediocre-tableEditable-axisCell mediocre-tableEditable-axisCell--row"><div class="mediocre-tableEditable-axisCell-numWrapper"><span class="mediocre-tableEditable-axisCell-num">8</span></div></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-7-0" data-namespace="table-ns1281"><span>Reaction Total</span></td><td class="cell is-value is-alignRight" data-cid="table-note-part9-7-1" data-namespace="table-ns1281"><span>20</span></td><td class="cell is-text is-alignLeft" data-cid="table-note-part9-7-2" data-namespace="table-ns1281"><span></span></td></tr></tbody></table></div></div><div class="mediocre-tableEditable-titleBarWrapper" style="left:0;"><div class="mediocre-tableEditable-titleBar"><div class="u-ellipsis-text mediocre-tableEditable-tableName">Table1</div></div></div></div></div></div><div class="mediocre-captionEditable-cell"></div></div><div class="component-bottom-row component-row"><div class="mediocre-captionEditable-cell"></div><div class="mediocre-captionEditable-cell"><div class="mediocre-captionEditable-caption--bottom multi-editable mediocre-captionEditable-caption editable selectable is-locked" contenteditable="false" data-allow-at-search="true" data-allow-multiline="true" data-cid="note-part9" data-index="3" style="width:365px;margin-left:0;"> | ||
Revision as of 21:29, 22 September 2016
Hello World!
Project: iGem Test Export
Authors: Louis Pasteur
Date: 2016-09-20
Tuesday, 9/20
Here's a sample experiment to show you how notebook entries work.
Use tables with formulas to make a master mix calculation. Edit the number of reactions to see it in action!
A | B | C | |
1 | Number of Reactions | 80 | |
2 | Component | Amount (uL/tube) | Master Mix (uL) |
3 | Water | 16 | 1280 |
4 | 10x Buffer | 2 | 160 |
5 | Enzyme | 1 | 80 |
6 | Master Mix Total | 19 | 1520 |
7 | Template DNA | 1 | |
8 | Reaction Total | 20 |
Table1
Insert new days to organize your entry (and see it on the Home calendar). Use checkboxes to plan out your day:
Combine above reaction in tube
Incubate at 37°C for an hour
Run gel
Extract band and save
Link to other Benchling files by dragging them in from the file browser at the left. Or use the @-symbol to insert a link to another Benchling file.
Drag and drop an image from your desktop to view it inline and take notes about it:
Insert code blocks to keep your scripts right next to your notes and results.
def calculate_score(input_bases, matched_bases):
mismatches = []
for i, (b, ob) in enumerate(zip(input_bases, matched_bases)):
if b != ob:
mismatches.append(i)
