Difference between revisions of "Resources/Troubleshooting"

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<center>This page is under active development and is in draft form. Nothing posted here is finalized.
 
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<h3>Welcome!</h3>
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<p>My name is Traci, and I'm here to help you with your cloning problems. <br><br>
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You can contact me: <ol> <li>by email at <i>traci AT igem DOT org</i></li><li> on Reddit <a href="http://www.reddit.com/user/Traci_at_iGEM/">Traci_at_iGEM</a></li><li> on Twitter <a href="https://twitter.com/Traci_H_Angelli">@Traci_H_Angelli</a> </li></ol></p>
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<h2>Learn about cloning troubleshooting here!</h2>
 
<h2>Learn about cloning troubleshooting here!</h2>
  
 
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<li>Read about <a href="#tips">General Tips and Tricks</a> with a focus on: </li>
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<li>Read about General Tips and Tricks with a focus on: </li>
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<ul><li><a href="https://2015.igem.org/Troubleshooting/Transformation">Transformations</a>, <a href="https://2015.igem.org/Troubleshooting/Restriction">Restriction Digests</a>, and <a href="https://2015.igem.org/Troubleshooting/Ligation">Ligations</a></li></ul><br>
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<ul><li><a href="https://2016.igem.org/Resources/Troubleshooting/Transformations">Bacterial Transformations</a></li>
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<li>Have a cloning problem? <a href="#ask">Ask a question!</a></li>
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        <li><a href="https://2016.igem.org/Resources/Troubleshooting/Restriction_Digests_and_Ligations">Restriction Digests and Ligations</a></li>
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         <li>While we want teams to use this resource, also make sure that you talk to your local resources as well - ask your instructors and more experienced students around you!</li>
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        <li><a href="https://2016.igem.org/Resources/Troubleshooting/PCR">Polymerase Chain Reaction (PCR)</a></li></li></ul><br>
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<li>Still have a cloning problem? Contact Traci and ask a question (see right box for contact info)!</li>
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         <li>Make sure that you also ask your instructors and more experienced students around you!</li>
 
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<p style="font-size: 15px; font-weight: bold; color: #5ba88a;">Welcome!</p>
 
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<p>My name is Traci, and I'm here to help you with your cloning problems. <br>
 
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You can contact me: <ol> <li>by email at <i>traci AT igem DOT org</i></li><li> on Reddit <a href="http://www.reddit.com/user/Traci_at_iGEM/">Traci_at_iGEM</a></li><li> on Twitter <a href="https://twitter.com/Traci_H_Angelli">@Traci_H_Angelli</a> </li></ol><br/></p>
 
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<h2 id="intro">Introduction</h2>
 
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Cloning is difficult. No one who has ever picked up a pipette in the lab would debate this fact. However, cloning shouldn't be impossible! This page exists to help students and teams who are struggling with cloning and other molecular techniques. Treat this page as another resource in your troubleshooting endeavors rather than the be-all, end-all resource for iGEM cloning problems. This is an experimental project for the 2015 iGEM season and I hope this will be a helpful resource for every iGEM team!
 
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As the Science and Technology Fellow at iGEM Headquarters, I want to try to help you out with cloning problems to the best of my abilities. To this end, I will be offering advice and possible solutions to your problems. As I start collecting questions and generating answers, I plan to create a Troubleshooting Guide that will serve as a resource for both current and future teams to use throughout their iGEM experience.
 
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My background is primarily in bacterial cloning with a focus on working in <i>E. coli</i>. I completed my doctorate in cell and molecular biology from the University of Rhode Island in 2011 and was a postdoctoral researcher in synthetic biology with Dr. Douglas Densmore at Boston University from 2011-2013. From there, I continued to work in the lab as the Executive Director of the Boston University Center of Synthetic Biology and I joined the iGEM Headquarters team in April 2015. In summary, I have over 14 years of experience with molecular techniques and cloning in <i>E. coli</i>, and over 4 years of experience with synthetic biology in particular.  
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<h2 id="intro">Introduction</h2>
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Cloning is difficult. No one who has ever picked up a pipette in the lab would debate this fact. However, cloning shouldn't be impossible! This page exists to help students and teams who are struggling with cloning and other molecular techniques. Treat this page as another resource in your troubleshooting endeavors rather than the be-all, end-all resource for iGEM cloning problems. I hope this will be a helpful resource for every iGEM team!
 
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<h2 id="tips">General Tips and Tricks</h2>
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<h2>General Tips and Tricks</h2>
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This section is meant to provide some general advice for cloning problems. I recommend you read through this material if you're having problems while you're waiting for a response to your specific question. Each link below is geared towards a specific area where cloning problems occur.
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<b>General Transformation Issues</b>
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For many teams, cloning problems center around transformation issues. Here I describe some general tips that can be applied to any type of assembly method when using <i>E. coli</i> cells as the transformation host.
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                        <li><a href="https://2015.igem.org/Troubleshooting/Transformation"><i>E. coli</i> Transformations</a></li>
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<h3>Transformation Problems</h3>
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<p>For many teams, cloning problems center around transformation issues. Here I describe some general tips that can be applied to any type of assembly method when using <i>E. coli</i> cells as the transformation host.</p>
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<b>General BioBricks Cloning Problems</b>
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Since we provide teams with nearly 2,000 BioBricks parts, I will discuss common problems students can experience when using BioBricks assembly. However, these tips and tricks can also be used for other assembly strategies that utilize restriction enzymes and DNA ligation.  
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<h3>Restriction Digest and Ligation Problems</h3>
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<p>Since we provide teams with nearly 2,000 BioBricks parts, I will discuss common problems students can experience when using restriction enzymes and DNA ligation assemblies, which includes BioBricks Assembly. </p>
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                        <li><a href="https://2015.igem.org/Troubleshooting/Ligation">Restriction Digest and Ligation</a></li>
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<h3>PCR Problems</h3>
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<p>text under development</p>
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<b>Note:</b>If you have other tips you'd like me to include in these pages, please send them using the <a href= "https://2015.igem.org/Troubleshooting#ask">question form</a> below! Likewise, if you tried out one of the tips and it worked (or didn't work), please let me know through the form below or by emailing me at <i> traci AT igem DOT org</i>. Your feedback will help us track how useful this section is so we can improve it throughout the competition.
 
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<h2>iGEM Protocols</h2>
 
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Below are the links to the various protocols that iGEM Headquarters has provided over the years. These protocols can also be found through the Parts Registry page under the "Help" and "Protocols" links in the black toolbar at the top of the page.
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Below are the links to the various protocols that iGEM Headquarters has provided over the years. These protocols can also be found through the Parts Registry page under the "Help" and "Protocols" links in the black toolbar at the top of the page. These are another useful resource that teams should read through when they're experiencing cloning problems.
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These are another useful resource that teams should read through when they're experiencing cloning problems.
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<b>BioBrick Cloning</b>
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<h5>BioBrick Cloning Protocols</h5>
 
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<li><a href="http://parts.igem.org/Help:Protocols/3A_Assembly">3A Assembly</a></li>
 
<li><a href="http://parts.igem.org/Help:Protocols/3A_Assembly">3A Assembly</a></li>
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<b>Cloning protocols that can be applied to BioBricks and non-BioBricks assemblies</b>
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<h5>Other Protocols for Molecular Techniques</h5>
 
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<li><a href="http://parts.igem.org/Help:Protocols/Competent_Cells">Making competent cells</a></li>
 
<li><a href="http://parts.igem.org/Help:Protocols/Competent_Cells">Making competent cells</a></li>
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Latest revision as of 17:53, 10 June 2016

Welcome!

My name is Traci, and I'm here to help you with your cloning problems.

You can contact me:

  1. by email at traci AT igem DOT org
  2. on Reddit Traci_at_iGEM
  3. on Twitter @Traci_H_Angelli

Learn about cloning troubleshooting here!

Introduction

Cloning is difficult. No one who has ever picked up a pipette in the lab would debate this fact. However, cloning shouldn't be impossible! This page exists to help students and teams who are struggling with cloning and other molecular techniques. Treat this page as another resource in your troubleshooting endeavors rather than the be-all, end-all resource for iGEM cloning problems. I hope this will be a helpful resource for every iGEM team!


General Tips and Tricks

Transformation Problems

For many teams, cloning problems center around transformation issues. Here I describe some general tips that can be applied to any type of assembly method when using E. coli cells as the transformation host.

Restriction Digest and Ligation Problems

Since we provide teams with nearly 2,000 BioBricks parts, I will discuss common problems students can experience when using restriction enzymes and DNA ligation assemblies, which includes BioBricks Assembly.

PCR Problems

text under development

iGEM Protocols

Below are the links to the various protocols that iGEM Headquarters has provided over the years. These protocols can also be found through the Parts Registry page under the "Help" and "Protocols" links in the black toolbar at the top of the page. These are another useful resource that teams should read through when they're experiencing cloning problems.

BioBrick Cloning Protocols
Other Protocols for Molecular Techniques