Difference between revisions of "Team:UMaryland/Model"

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             left: 0;
 
             left: 0;
 
             right: 0;
 
             right: 0;
−
             margin-top: 100px;
+
             margin-top: 200px;
 
             z-index: 3;
 
             z-index: 3;
 
         }
 
         }
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             right: 15px;
 
             right: 15px;
 
             z-index: 2;
 
             z-index: 2;
−
             margin-top: -83px;
+
             margin-top: -12px;
 
         }
 
         }
  
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       <script>
 
       <script>
 
/* Hiding stupid stuff*/
 
/* Hiding stupid stuff*/
−
                $('#top_title').css('display', 'none');
+
    $('#top_title').css('display', 'none');
−
$('#top_menu').css('display', 'none');
+
$('#top_menu').css('display', 'none');
−
//$('#top_menu_14').css('display', 'none');
+
  $('#HQ_page').css('display', 'none');
−
                $('#HQ_page').css('display', 'none');
+
$('#top_menu_under').css('display', 'none');
−
$('#top_menu_under').css('display', 'none');
+
$('#content').removeClass('mw-body')
−
$('#content').removeClass('mw-body');
+
    .attr('role','dummy2')
−
$('#content').attr('role','dummy2')
+
    .attr('id','dummy');
−
$('#content').attr('id','dummy')
+
 
$('#HQ_page').attr("id","iGEM"); //voids all dumb CSS iGEM HQ wrote which overrides our code
 
$('#HQ_page').attr("id","iGEM"); //voids all dumb CSS iGEM HQ wrote which overrides our code
 
$('#mw-content-text').attr("id","overruled").removeClass('mw-content-ltr');
 
$('#mw-content-text').attr("id","overruled").removeClass('mw-content-ltr');
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$('nav').mouseover(
 
$('nav').mouseover(
 
function () {
 
function () {
−
$('#img-logo').css('transition', '.35s ease-in');
+
$('#img-logo').css('transition', '.35s ease-in')
−
$('#img-logo').css('opacity', '1');
+
    .css('opacity', '1');
 
$('nav ul').addClass("hover");
 
$('nav ul').addClass("hover");
 
}
 
}
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function () {
 
function () {
 
var scroll = $(window).scrollTop();
 
var scroll = $(window).scrollTop();
−
if (scroll > 0) {if ( $(window).width() >= 980) { var pushed = $('body').hasClass('pushed'); if (pushed == false) {
+
if (scroll > 0) {if ( $(window).width() >= 1090) { var pushed = $('body').hasClass('pushed'); if (pushed == false) {
−
$('#img-logo').css('transition', '.25s ease');
+
$('#img-logo').css('transition', '.25s ease')
−
$('#img-logo').css('opacity', '0');
+
    .css('opacity', '0');
 
$('nav ul').removeClass("hover");
 
$('nav ul').removeClass("hover");
 
$('nav').css('transition', '.5s ease');
 
$('nav').css('transition', '.5s ease');
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$(document).ready(function() {     
 
$(document).ready(function() {     
 
function checkWidth() {
 
function checkWidth() {
−
if ($(window).width() < 980 || $('nav').hasClass('pushed')){
+
if ($(window).width() < 1090 || $('nav').hasClass('pushed')){
 
$('nav li').css('display', 'none');
 
$('nav li').css('display', 'none');
 
$('#img-more').css('display','block');
 
$('#img-more').css('display','block');
 
$('nav ul').addClass("hover");
 
$('nav ul').addClass("hover");
−
$('#img-logo').css('transition', '.35s ease-in');
+
$('#img-logo').css('transition', '.35s ease-in')
−
$('#img-logo').css('opacity', '1');
+
    .css('opacity', '1');
 
} else {
 
} else {
 
$('nav li').css('display', 'inline');
 
$('nav li').css('display', 'inline');
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$('nav ul').removeClass("hover");
 
$('nav ul').removeClass("hover");
 
if ($(window).scrollTop() > 0) {
 
if ($(window).scrollTop() > 0) {
−
$('#img-logo').css('transition', '.25s ease');
+
$('#img-logo').css('transition', '.25s ease')
−
$('#img-logo').css('opacity', '0');
+
    .css('opacity', '0');
 
$('nav ul').addClass("scrolled");
 
$('nav ul').addClass("scrolled");
 
}
 
}
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$('#img-more').css('display','none');
 
$('#img-more').css('display','none');
 
$('nav ul').removeClass("hover");
 
$('nav ul').removeClass("hover");
−
$('#img-logo').css('transition', '.25s ease');
 
−
$('#img-logo').css('opacity', '0');
 
 
}}
 
}}
 
});
 
});
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$(window).scroll(function() {
 
$(window).scroll(function() {
 
var scroll = $(window).scrollTop();
 
var scroll = $(window).scrollTop();
−
if (scroll > 0) { if ( $(window).width() >= 980) {
+
if (scroll > 0) { if ( $(window).width() >= 1090) {
 
nav.addClass("scrolled");
 
nav.addClass("scrolled");
 
nav.removeClass("hover");
 
nav.removeClass("hover");
−
$('#img-logo').css('transition', '.25s ease');
+
$('#img-logo').css('transition', '.25s ease')
−
$('#img-logo').css('opacity', '0');
+
    .css('opacity', '0');
 
}} else {
 
}} else {
 
nav.removeClass("scrolled");
 
nav.removeClass("scrolled");
−
$('#img-logo').css('transition', '.35s ease-in');
+
$('#img-logo').css('transition', '.35s ease-in')
−
$('#img-logo').css('opacity', '1');
+
    .css('opacity', '1');
 
}
 
}
 
});
 
});

Revision as of 00:43, 6 October 2016

</div> </div> Modeling

Modeling Predicting Data and Optimizing Results Applying engineering principals to biological systems

Modeling is crucial to designing biological systems such as ours, where we want both predictability and optimization of our organism. We used the SimBiology package in MatLab in order to model our multiple metabolic pathways using data gathered experimentally and from literature. We then optimized the parameters to determine what the optimal growth conditions of our organisms will be in order to most efficiently biosequester methane.

Pathways

Three different constructs were synthesized by UMaryland iGEM in hopes of being co-cultured. They were:

  • sMMO Construct: oxidizing methane into methanol using oxygen
  • Formate Construct: further oxidizing methanol into carbon dioxide using NADH
  • Fructose Construct: further oxidizing methanol into cellular metabolites

Protocol

Results