Difference between revisions of "Team:Saint Rose School A/Description"

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"> We are a group of five students of 2nd Senior Year from Saint Rose School, passionate about synthetic biology.
In mid 2015 we were part of a scientific workshop of our school, which was directed by the teacher Luis Contreras and its purpose was to promote science .In the beginning we were eight students, but time went by and we were five. Lately, our group had the chance to be part of the “Academia de Emprendimiento Científico” of Universidad Mayor De Chile, where we learnt about synthetic biology and entrepreneurship. This was crucial, because it has helped us in all the aspects of our project, from devise, design, and work in the lab with the  plasmids selected to convert The CO Tracker in something ideal for a public who may need it.
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"> The Metropolitan Region of Chile is a basin enclosed by mountain ranges that do not allow a free circulation of the pollutant particles, causing an inestability of the pollution levels in different areas of the city.
From September to December of 2016, we had theoretical lessons of synthetic biology, advertising and economics;  these classes helped us to define several aspects of our project. Through January of 2016 we worked in the lab so we could have a solid foundation of the use of equipment and instruments.                      
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From April to mid-July we had theoric lessons about how to improve and advance in our project, during this term we had a new tutor, Cristian Ramírez, who has been with us until now, and by the end of July we started our practical-lab project so we were able to put into operation our scientific project. </p>
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During several months of 2015, the Metropolitan Region had high polution rates, those high rates in a long-term cause the inhabitants different health problems. These rates have mantained, despite the measures that have been taken to decrease this situation.
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One of the main pollutants that exists in the Metropolitan Region is the carbon monoxide, an invisible and odourless gas. After our research, we became aware of how dangerous this gas is for the health. The damage that provokes to the body depends on the amount in which is present, if the levels are too high, it might cause death.
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Carbon monoxide is 200 times more related to the hemoglobin than the oxygen, when the carbon monoxide gets together with the hemo group, it creates the carboxyhemoglobin, blocking the entry of oxygen to the blood, causing hypoxia and eventually, death. For these reasons, the efficient and precise detection is essential.
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The presence of CO is related to industrial processes such as paper factories and steel foundries. It is also present in fires, machines and homes with heating systems. That is why many people are exposed everyday to this dangerous pollutant.
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"> Initially, our teacher in charge of the scientific project, Luis Contreras was our tutor since we started with the project until the end of December 2015. Unfortunately, due to some problems with the school, he was not able to continue with us. In January, other tutor was assigned to our group, Miss Giglia Veloso, who was with us until the end of February, even though, due to personal problems she couldn't continue with her role as a tutor.
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"> In Chile, the Metropolitan Region, which is the most populated area in the country, is constantly exposed to very high pollution levels, with frequent environmental emergencies. Due to this situation, at first instance we wanted to detect the most harmful pollutants to our health, but after carefully analysing the issue we decided to focus on carbon monoxide specifically
After summer break, teacher Cristian Ramirez became our definitive tutor, and he has been with us until the IGEM competition. </p>
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Through synthetic biology we were able to genetically modify living organisms that react to the presence of CO. This process is achieved by transferring DNA sequences of the Rhodospirillum rubrum protobacteria to an E. coli bacterium. We will implement these genes into the E.coli to use them as carbon monoxide detectors, since its organism is easier to work with because there is a better understanding of its genome. The bacteria is also going to contain chromoproteins in order to indicate the presence of CO.
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The modified E. coli will be inside an accessory like a bracelet or a wristband, and it is going to react to the presence of CO by changing its colour to purple or pink depending on the quantity of the pollutant in the air. 
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All of this will be made using the knowledge gained at the Academy of Scientific Entrepreneurship.    
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Synthetic biology and the study of the genome of different organisms, allow nowadays access to scientific information stored in databases available to general public, which is necessary to do the application of sequences, genes, biological processes made by living organisms to replicate the metabolism of programmed bacteria to solve daily problems. After a bibliographic research we identified Rhodospirillum rubrum protobacteria, which is capable of living under either aerobic or anaerobic conditions. This protobacteria can oxidize carbon monoxide to seize the electrons released in this process; to detect CO, it possesses a mechanism that works with the transcription factor CooA, which contains a heme group with iron that binds to the molecule.
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Revision as of 00:23, 14 October 2016

Project

Problem

The Metropolitan Region of Chile is a basin enclosed by mountain ranges that do not allow a free circulation of the pollutant particles, causing an inestability of the pollution levels in different areas of the city. During several months of 2015, the Metropolitan Region had high polution rates, those high rates in a long-term cause the inhabitants different health problems. These rates have mantained, despite the measures that have been taken to decrease this situation. One of the main pollutants that exists in the Metropolitan Region is the carbon monoxide, an invisible and odourless gas. After our research, we became aware of how dangerous this gas is for the health. The damage that provokes to the body depends on the amount in which is present, if the levels are too high, it might cause death. Carbon monoxide is 200 times more related to the hemoglobin than the oxygen, when the carbon monoxide gets together with the hemo group, it creates the carboxyhemoglobin, blocking the entry of oxygen to the blood, causing hypoxia and eventually, death. For these reasons, the efficient and precise detection is essential. The presence of CO is related to industrial processes such as paper factories and steel foundries. It is also present in fires, machines and homes with heating systems. That is why many people are exposed everyday to this dangerous pollutant.

Solution

In Chile, the Metropolitan Region, which is the most populated area in the country, is constantly exposed to very high pollution levels, with frequent environmental emergencies. Due to this situation, at first instance we wanted to detect the most harmful pollutants to our health, but after carefully analysing the issue we decided to focus on carbon monoxide specifically Through synthetic biology we were able to genetically modify living organisms that react to the presence of CO. This process is achieved by transferring DNA sequences of the Rhodospirillum rubrum protobacteria to an E. coli bacterium. We will implement these genes into the E.coli to use them as carbon monoxide detectors, since its organism is easier to work with because there is a better understanding of its genome. The bacteria is also going to contain chromoproteins in order to indicate the presence of CO. The modified E. coli will be inside an accessory like a bracelet or a wristband, and it is going to react to the presence of CO by changing its colour to purple or pink depending on the quantity of the pollutant in the air.  All of this will be made using the knowledge gained at the Academy of Scientific Entrepreneurship.     Synthetic biology and the study of the genome of different organisms, allow nowadays access to scientific information stored in databases available to general public, which is necessary to do the application of sequences, genes, biological processes made by living organisms to replicate the metabolism of programmed bacteria to solve daily problems. After a bibliographic research we identified Rhodospirillum rubrum protobacteria, which is capable of living under either aerobic or anaerobic conditions. This protobacteria can oxidize carbon monoxide to seize the electrons released in this process; to detect CO, it possesses a mechanism that works with the transcription factor CooA, which contains a heme group with iron that binds to the molecule.