Difference between revisions of "Team:NYMU-Taipei/Notebook-Lab Book-fruit flies hemolymph"

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<div class="technology">Week13</div>
+
<div class="technology">9/22</div>
 
<div class="thelanguage">
 
<div class="thelanguage">
<li><p style="font-size: 18px;">9/11: Standard part PgpdA amplification PCR with KOD polymerase</p></li>
+
<li><p style="font-size: 18px;">For the situation that our fruit flies in the centrifuge tubes were dead quickly , so we visited Dr. Yu-Bing Huang in Taiwan Agricultural Research Institute, Applied Zoology Division, and asking the problems about the right way for feeding oriental fruit flies. We change our way of feeding oriental fruit flies. </p></li>
<li><p style="font-size: 18px;">9/11: pBARGPE1 digested for pBAR_PgpdA_EL222_TtrpC construction</p></li>
+
<li><p style="font-size: 18px;">9/11: TtrpC KOD PCR amplification</p></li>
+
<li><p style="font-size: 18px;">9/11: TtrpC KOD PCR amplification</p></li>
+
<li><p style="font-size: 18px;">9/11: pBAR_PgpdA_EL222_TtrpC containing culture used in 3 in 1</p></li>
+
<li><p style="font-size: 18px;">9/11: pBAR_KR transformed into competent cell</p></li>
+
<li><p style="font-size: 18px;">9/11: pBAR_KR transformed into competent cell</p></li>
+
<li><p style="font-size: 18px;">9/12: pBAR_KR performed plasmid extraction and plasmid PCR (successful)</p></li>
+
<li><p style="font-size: 18px;">9/12: pBAR_PgpdA_EL222_TtrpC checked with restriction digestion</p></li>
+
<li><p style="font-size: 18px;">9/12: pBAR_PgpdA_EL222_TtrpC amplified with plasmid PCR</p></li>
+
<li><p style="font-size: 18px;">9/12: Successfully constructed the plasmid pBAR_PgpdA_EL222_TtrpC</p></li>
+
<li><p style="font-size: 18px;">9/12: Standard part PgpdA mutation PCR (mutated PstI)</p></li>
+
<li><p style="font-size: 18px;">9/12: Standard part PMCL1 amplification PCR with KOD polymerase</p></li>
+
<li><p style="font-size: 18px;">9/13: Standard Part PMCL1 mutation PCR (mutated SpeI) </p></li>
+
<li><p style="font-size: 18px;">9/13: Standard part TtrpC amplification PCR with KOD polymerase</p></li>
+
<li><p style="font-size: 18px;">9/13: pBAR _RFP_TtrpC transformed into competent cell</p></li>
+
<li><p style="font-size: 18px;">9/13: RFP_TtrpC PCR to amplify the target sequence</p></li>
+
<li><p style="font-size: 18px;">9/13: pBAR _RFP_TtrpC did 3 in 1</p></li>
+
<li><p style="font-size: 18px;">9/13: pBAR _RFP_TtrpC digestion check</p></li>
+
<li><p style="font-size: 18px;">9/14: pBAR _RFP_TtrpC plasmid extraction</p></li>
+
<li><p style="font-size: 18px;">9/14: RFP_TtrpC digested</p></li>
+
<li><p style="font-size: 18px;">9/14: K118400 and TtrpC used PCR to amplify the target sequence</p></li>
+
<li><p style="font-size: 18px;">9/14: KR_TtrpC used PCR to amplify the target sequence</p></li>
+
<li><p style="font-size: 18px;">9/15: KR_TtrpC digested with restriction enzymes</p></li>
+
<li><p style="font-size: 18px;">9/15: Standard part TtrpC mutation PCR (mutated XbaI)</p></li>
+
<li><p style="font-size: 18px;">9/15: pBARGPE1 digested for pBAR_KR_TtrpC construction</p></li>
+
<li><p style="font-size: 18px;">9/16: pBAR_KR_TtrpC transformed into competent cell</p></li>
+
<li><p style="font-size: 18px;">9/16: Transformed pBAR_KR_TtrpC into competent cell</p></li>
+
<li><p style="font-size: 18px;">9/16: Digested pBAR_KR for transforming into Metarhizium anisopliae</p></li>
+
<li><p style="font-size: 18px;">9/16: Extracted plasmid BBa_K118400</p></li>
+
<li><p style="font-size: 18px;">9/16: pBAR_EL222_TtrpC did plasmid PCR</p></li>
+
<li><p style="font-size: 18px;">9/16: pBAR_EL222_TtrpC did plasmid PCR (confirmed successfully)</p></li>
+
<li><p style="font-size: 18px;">9/16: pBAR _RFP_TtrpC did digestion check</p></li>
+
<li><p style="font-size: 18px;">9/17: pBAR_RFP_TtrpC did digestion check</p></li>
+
<li><p style="font-size: 18px;">9/17: pBAR_EL222_TtrpC plasmid stored and transformed cultures cryopreserved</p></li>
+
<li><p style="font-size: 18px;">9/17: pBAR_KR_TtrpC did 3 in 1</p></li>
+
<li><p style="font-size: 18px;">9/17: Extracted plasmid pBAR_KR_TtrpC</p></li>
+
  
 
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</div>
 
</div>
  
<div class="technology">Week14</div>
+
<div class="technology">9/23</div>
 
<div class="thelanguage">
 
<div class="thelanguage">
<li><p style="font-size: 18px;">9/18: Transformed pBAR_RFP_TtrpC into competent cell</p></li>
+
<li><p style="font-size: 18px;">Producing new feeding box which is larger and ventilation, and design the experimental boxes for Experiment 2: Infecting B. dorsalis with non-designed M. anisopliae.</p></li>
<li><p style="font-size: 18px;">9/18: pBAR_RFP_TtrpC did 3 in 1</p></li>
+
 
<li><p style="font-size: 18px;">9/18: pBAR_KR_TtrpC did plasmid PCR and digestion check</p></li>
+
<div class="imageimage">
<li><p style="font-size: 18px;">9/18: BBa_E0040 did plasmid PCR</p></li>
+
<div style="position:relative; width:48%;">
<li><p style="font-size: 18px;">9/19: Amplified GFP from plasmid BBa_E0040</p></li> 
+
<img src="https://static.igem.org/mediawiki/2016/9/91/T--NYMU-Taipei--photo-OFF-related-14697029_120300000683154255_1538186769_n.jpg" width="100%" /></div>
<li><p style="font-size: 18px;">9/19: Extracted plasmid BBa_E0040 </p></li>
+
<div style="position:relative; width:48%;">
<li><p style="font-size: 18px;">9/20: KR_TtrpC digestion</p></li>
+
<img src="https://static.igem.org/mediawiki/2016/3/30/T--NYMU-Taipei--photo-OFF-related-14699699_120300000675475754_434414381_n.jpg" width="100%" /></div>
<li><p style="font-size: 18px;">9/20: Transformed pBAR_KR_TtrpC into competent cell</p></li>
+
</div>
<li><p style="font-size: 18px;">9/20: pBAR_KR_TtrpC did 3 in 1</p></li>
+
 
<li><p style="font-size: 18px;">9/20: Extracted plasmid pBAR_KR_TtrpC </p></li>
+
<p style="font-size: 18px;">(Left picture: experimental boxes; Right picture: the internal space of feeding box)</p>
<li><p style="font-size: 18px;">9/20: pBAR_KR_TtrpC did digestion check</p></li>
+
<li><p style="font-size: 18px;">9/20: Extracted plasmid pBAR_RFP_TtrpC </p></li>
+
<li><p style="font-size: 18px;">9/20: pBAR_RFP_TtrpC did digestion check</p></li>
+
<li><p style="font-size: 18px;">9/20: RFP_TtrpC digestion</p></li>
+
<li><p style="font-size: 18px;">9/21: pBAR_KR_TtrpC did digestion check</p></li>
+
<li><p style="font-size: 18px;">9/21: pBAR_RFP_TtrpC did digestion check</p></li>
+
<li><p style="font-size: 18px;">9/21: pBAR_RFP_TtrpC did 2 in 1</p></li>
+
<li><p style="font-size: 18px;">9/21: pBARGPE1 and RFP_TtrpC digestion</p></li>
+
<li><p style="font-size: 18px;">9/22: Amplified RFP_TtrpC with KOD polymerase</p></li>
+
<li><p style="font-size: 18px;">9/22: Extracted plasmid pBAR_KR_TtrpC </p></li>
+
<li><p style="font-size: 18px;">9/22: pBAR_KR_TtrpC did plasmid PCR</p></li>
+
<li><p style="font-size: 18px;">9/22: pMCL1 and pBAR_KR_TtrpC digestion (pMCL1 was not digested successfully)</p></li>
+
<li><p style="font-size: 18px;">9/22: pBAR_PgpdA_EL222_TtrpC digested for transforming into Metarhizium anisopliae </p></li>
+
<li><p style="font-size: 18px;">9/23: Amplified pMCL1 with KOD polymerase</p></li>
+
<li><p style="font-size: 18px;">9/24: pBAR_RFP_TtrpC did digestion check</p></li>
+
<li><p style="font-size: 18px;">9/24: Extracted plasmid pBAR_RFP_TtrpC (from 9/5 plate)</p></li>
+
  
 
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</div>
 
</div>
  
<div class="technology">Week15</div>
+
<div class="technology">9/30</div>
 
<div class="thelanguage">
 
<div class="thelanguage">
<li><p style="font-size: 18px;">9/25: Transformed pBAR_RFP_TtrpC into competent cell</p></li>
+
<li><p style="font-size: 18px;">The new oriental fruit flies broke through cocoon in the new feeding box</p></li>
<li><p style="font-size: 18px;">9/25: RFP_TtrpC digestion</p></li>
+
 
<li><p style="font-size: 18px;">9/25: Amplified RFP-TtrpC with KOD polymerase </p></li>
+
<p style="font-size: 18px;">the new way for feeding oriental fruit flies is using gauze to be the windows that could be ventilation, and we can put watered agar and artificial feed on the top of gauze, then there were no water and feed in the box which lead to the environment being mess, and they also could have enough water and feed.</p>
<li><p style="font-size: 18px;">9/25: Amplified RFP_TtrpC with KOD polymerase</p></li>
+
<br />
<li><p style="font-size: 18px;">9/25: pMCL1 and pBAR_KR_TtrpC digestion</p></li>
+
<li><p style="font-size: 18px;">Infecting B. dorsalis with non-designed M. anisopliae started to conduct.</p></li>
<li><p style="font-size: 18px;">9/25: Transformed pBAR_pMCL1_KR_TtrpC into competent cell</p></li>
+
 
<li><p style="font-size: 18px;">9/25: Transformed pBAR_pMCL1_KR_TtrpC into competent cell</p></li>
+
<div class="imageimage">
<li><p style="font-size: 18px;">9/25: pBAR_pMCL1_KR_TtrpC did 3 in 1</p></li>
+
<div style="position:relative; width:48%;">
<li><p style="font-size: 18px;">9/26: Extracted plasmid pBAR_pMCL1_KR_TtrpC</p></li>
+
<img src="https://static.igem.org/mediawiki/2016/c/c5/T--NYMU-Taipei--photo-OFF-related-14696875_120300000677699020_204079543_n.jpg" width="100%" /></div>
<li><p style="font-size: 18px;">9/26: pBAR_RFP_TtrpC did 2 in 1</p></li>
+
<div style="position:relative; width:48%;">
<li><p style="font-size: 18px;">9/26: Extracted plasmid pBAR_RFP_TtrpC </p></li>
+
<img src="https://static.igem.org/mediawiki/2016/4/46/T--NYMU-Taipei--photo-OFF-related-14696862_120300000674829370_219600743_n.jpg" width="100%" /></div>
<li><p style="font-size: 18px;">9/26: pBAR_RFP_TtrpC did digestion check</p></li>
+
</div>
<li><p style="font-size: 18px;">9/26: pBAR_RFP_TtrpC did digestion check</p></li>
+
 
<li><p style="font-size: 18px;">9/26: Amplified pMCL1 with KOD polymerase</p></li>
+
<div class="imageimage">
<li><p style="font-size: 18px;">9/27: Amplified pMCL1 with KOD polymerase </p></li>
+
<div style="position:relative; width:48%;">
<li><p style="font-size: 18px;">9/28: pBAR_pMCL1_KR_TtrpC did digestion check</p></li>
+
<img src="https://static.igem.org/mediawiki/2016/b/b9/T--NYMU-Taipei--photo-OFF-related-14686253_120300000675039507_1525612271_n.jpg" width="100%" /></div>
<li><p style="font-size: 18px;">9/28: pBAR_RFP_TtrpC did plasmid PCR</p></li>
+
<div style="position:relative; width:48%;">
<li><p style="font-size: 18px;">9/28: Successfully constructed the plasmid pBAR_RFP_TtrpC</p></li>  
+
<img src="https://static.igem.org/mediawiki/2016/c/c7/T--NYMU-Taipei--photo-OFF-related-14627961_120300000679852339_2089167734_n.jpg" width="100%" /></div>
<li><p style="font-size: 18px;">9/29: Amplified pMCL1 with KOD polymerase</p></li>
+
</div>
<li><p style="font-size: 18px;">9/30: pBAR_pMCL1_KR_TtrpC did digestion check</p></li>
+
 
<li><p style="font-size: 18px;">9/30: Received the junction primer of GFP-TtrpC</p></li>
+
<p style="font-size: 18px;">Photos shows three concentration condition and negative control environment of experiment "Infecting B. dorsalis with non-designed M. anisopliae"</p>
<li><p style="font-size: 18px;">9/30: GFP_TtrpC ran ligation PCR</p></li>
+
<li><p style="font-size: 18px;">10/1: GFP_TtrpC ran ligation PCR</p></li>
+
  
 
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Revision as of 19:41, 17 October 2016

Lab note

Lab note



Overview


This section of our wiki contains the protocols for our insect experiments, including cultivation, infection rate tests, and hemolymph extraction.

Related experiment schedule & Lab note



Experiments

                                       
Experiments related to B. dorsalisNumberDate
Diameter of the tunnel that allows passage to one B. dorsalis18/30~9/1
Infecting B. dorsalis with non-designed M. anisopliae2-19/30~10/7
infecting female B. dorsalis by copulation with infected male B. dorsalis2-210/10~10/17
                                       
Experiments related to B. dorsalisNumberDate
Diameter of the tunnel that allows passage to one B. dorsalis18/30~9/1
Infecting B. dorsalis with non-designed M. anisopliae2-19/30~10/7
infecting female B. dorsalis by copulation with infected male B. dorsalis2-210/10~10/17
                                       
Experiments about hemolymph extractionNumberDate
Blatta lateralis19/20~9/30
Bactro29/29~10/5
Bombyx mori310/3~10/
                                       
Experiments about hemolymph extractionNumberDate
Blatta lateralis19/20~9/30
Bactro29/29~10/5
Bombyx mori310/3~10/

Routine works

                       
Routine tasks of feeding Bactrocera dorsalisDate
Produce & change the tube with the specific agar8/24~9/20
Produce & change water gel and the specific ratio fodder9/22~10/
                       
Routine tasks of feeding Bactrocera dorsalisDate
Produce & change the tube with the specific agar8/24~9/20
Produce & change water gel and the specific ratio fodder9/22~10/
                       
Routine tasks of hemolymph extractionDate
Collect the mulberry leaves to feed the silkworm10/3~10/
Sterilize the related equipments9/20~10/
                       
Routine tasks of hemolymph extractionDate
Collect the mulberry leaves to feed the silkworm10/3~10/
Sterilize the related equipments9/20~10/


8/23
  • Oriental fruit flies sent to lab and cultivated by large transparent box to avoid oriental fruit flies flying out.

  • [Collapse]

    8/24
  • We used both of centrifuge tube and feeding box to feed oriental fruit flies for comparing and ensuring the status of oriental fruit flies that established the independent space for observing oriental fruit flies.


  • [Collapse]

    8/25
  • B. dorsalis started to break through the cocoon. We conducted to put B. dorsalis to centrifuge tubes, avoiding the feeding box cannot load all oriental fruit flies. We poured the special agar to centrifuge tubes, and put centrifuges into entrance to catch oriental fruit flies. Then we sealed the centrifuge tubes by cotton.

  • (The team members put agar into centrifuge tubes which would be their feed.)

    (The left picture is that oriental fruit flies broke through cocoon; the right picture is the feeding box & centrifuge tubes where fed oriental fruit flies.)

    [Collapse]

    8/30
  • First time to Conducting Experiment 1

  • [Collapse]

    9/3
  • Changing the centrifuge tubes where oriental fruit flies lived. (Avoid the environment being mess.) /p>

  • [Collapse]

    9/5
  • Changing the centrifuge tubes where oriental fruit flies lived.

  • [Collapse]

    9/6
  • The oriental fruit flies in centrifuge tubes are dead quickly, so we conducted trouble shooting and sent the mail to professors who research oriental fruit flies.

  • We took the trap to Beitou orchard to try to catch oriental fruit flies.

  • [Collapse]

    9/7
  • Second time to Conducting Experiment 1.

  • Conducting trouble shooting.

  • [Collapse]

    9/10
  • Searching the store selling the silkworm for extracting hemolymph which is used to induce pMcl1.

  • [Collapse]

    9/13
  • Visiting two farmers working in the orchard to ask the information about oriental fruit flies in the nature environment, and installing the trap of catching oriental fruit flies.

  • (Left picture: the team member install the trap; Right picture: the farmer and our team member took a picture)

  • Sent the mail to researchers to ask for making public the content of the mail.

  • [Collapse]

    9/15
  • Communicating with Chang Ming ecological education sericulture, asking the information of buying silkworm.

  • [Collapse]

    9/16
  • Picking up the oriental fruit fly larval from rotten guavas and feeding them.

  • Left picture: the team members were picking up the oriental fruit fly larval from rotten guavas; Right picture: the larval have picked up and put into another box. Expected becoming pupae after six days.

  • [Collapse]

    9/22
  • For the situation that our fruit flies in the centrifuge tubes were dead quickly , so we visited Dr. Yu-Bing Huang in Taiwan Agricultural Research Institute, Applied Zoology Division, and asking the problems about the right way for feeding oriental fruit flies. We change our way of feeding oriental fruit flies.

  • [Collapse]

    9/23
  • Producing new feeding box which is larger and ventilation, and design the experimental boxes for Experiment 2: Infecting B. dorsalis with non-designed M. anisopliae.

  • (Left picture: experimental boxes; Right picture: the internal space of feeding box)

    [Collapse]

    9/30
  • The new oriental fruit flies broke through cocoon in the new feeding box

  • the new way for feeding oriental fruit flies is using gauze to be the windows that could be ventilation, and we can put watered agar and artificial feed on the top of gauze, then there were no water and feed in the box which lead to the environment being mess, and they also could have enough water and feed.


  • Infecting B. dorsalis with non-designed M. anisopliae started to conduct.

  • Photos shows three concentration condition and negative control environment of experiment "Infecting B. dorsalis with non-designed M. anisopliae"

    [Collapse]

    Week16
  • 10/2: GFP_TtrpC digested for ligation with pBARGPE1

  • 10/2: Transformed pBAR_GFP_TtrpC into competent cells

  • 10/2: pBARGPE1 digested for pBAR_GFP_TtrpC construction

  • 10/2: pBARGPE1 resuspended (from cryopreservation)

  • 10/3: Extracted plasmid pBARGPE1

  • 10/3: pBAR_GFP_TtrpC containing cultures used in 2 in 1

  • 10/3: Extracted plasmid pBAR_GFP_TtrpC

  • 10/3: pBAR_GFP_TtrpC digestion check(failure)

  • 10/3: pBAR_GFP_TtrpC PCR check(failure)

  • 10/3: Transformed pBAR_GFP_TtrpC into competent cells

  • 10/3: pBARGPE1 checked with restriction digestion (correct)

  • 10/4: pBARGPE1 plasmid stored

  • 10/4: pBAR_GFP_TtrpC containing cultures used in 2 in 1

  • 10/4: pBAR_GFP_TtrpC plasmid extraction

  • 10/4: pBAR_GFP_TtrpC digestion check

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