Difference between revisions of "Team:Aachen/HP/Silver"

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             <h1 style="padding-left: 0.8cm;">Medal Criteria</h1>
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             <h1 style="padding-left: 0.8cm;">Public Engagement</h1>
 
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<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm; font-size:16px;"> Here, we want to summarize how we fulfilled the criteria required to win medals in the iGEM competition in the course of our project.</p>
 
  
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<p align="justify" style="font-size:16px; padding-left : 1cm; padding-right:1cm;">Everything related to our mission of spreading the thought of iGEM and especially the part of synthetic biology is listed below.
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<h2 style="border-bottom: 5px solid #005b04;padding-left: 1.0cm;">Spreading the News</h2>
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<p align="justify"  style="font-size:16px; padding-left : 1cm; padding-right:1cm;">We wished to get in touch with as many people as possible. Hence, for presenting our work without us being physically there, we developed several ways to spread information about our project and the idea of Synthetic Biology.<br/>
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<figcaption style="text-align:center; font-size: 15px;"><b style="color: #be7b2e"">Bronze (4/4)</b></figcaption>
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<a href="#bronze">
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<img src="https://static.igem.org/mediawiki/2016/5/53/T--Aachen--medal_bronze.png" /></a>
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<td >
 
<td >
<figcaption style="text-align:center; font-size: 15px;" ><b style="color:#c6c6c6">Silver (3/3)</b></figcaption>
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<img src="https://static.igem.org/mediawiki/2016/f/f2/T--Aachen--newsletter-icon.png" style="position:relative;top:0px; left: 160px; margin-top:30px;"/>
<a href="#silver">
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<br/><br/>
<img src="https://static.igem.org/mediawiki/2016/c/ca/T--Aachen--medal_silver_small.png" /></a>
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<p align="justify" style="font-size:16px; padding-left : 1cm; padding-right:1cm; margin-top:5px;"><b style="color:#005C04">Newsletter</b><br/>From the beginning on, we received a lot of support from various sides and many people were interested in our project. That is why we thought of a way to inform them all at the same time about our progress and developed a monthly newsletter. It was sent to all of our supporters and everybody who opted in. With the newsletter we intended to explain our project to people with and without scientific background and therefore developed a short and an extended version. Writing it helped us reflecting and also preparing for the wiki. We even received suggestions from experts who read about our main challenges in the newsletter.
 
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<figcaption style="text-align:center; font-size: 15px;" ><b style="color: #ffc20b">Gold (4/4)</b></figcaption>
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<img src="https://static.igem.org/mediawiki/2016/1/15/T--Aachen--flyer-icon.png" style="position:relative;top:-20px; left: 150px; "/><br/>
<a href="#gold">
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<p align="justify" style="font-size:16px; padding-left : 1cm; padding-right:1cm;"><b style="color:#005C04 "> Flyer Distribution</b><br/>Our flyer was created in the beginning of our project to give interested supporters a short overview about our idea and to inform people about what we are doing throughout this half year of participating in iGEM.<br/>
<img src="https://static.igem.org/mediawiki/2016/f/f1/T--Aachen--medal_gold_small.png" /></a>
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As iGEM is a great opportunity and experience for everybody - not only university students - and as we could not visit as many schools as we wished, we also sent an adapted version of the flyer with additional information about the competition to about 300 different schools.
 
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<h2 style="padding-left: 1.0cm; padding-right: 1.0cm; ><a name="bronze"class="anchor"><b style="color: #be7b2e"">Bronze (4/4)</b></a></h2>
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<h2 style="border-bottom: 5px solid #005b04;padding-left: 1.0cm;">Presenting iGEM and Our Project at Schools</h2>
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<img src="https://static.igem.org/mediawiki/2016/5/53/T--Aachen--medal_bronze.png" style="position:relative;top:50px; left: 20px; "/>
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<img src="https://static.igem.org/mediawiki/2016/a/a4/T--Aachen--HP_Engagment-figure_1-school_visit-D%C3%BCsseldorf.png" style="position:relative;top:30px; left: 30px; "/>
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<figcaption  style="position:relative;top:30px; left:30px; font-size:12px; "><i>figure 1 "FCG" school in Düsseldorf</i></figcaption>
 
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<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm; font-size:16px;">  
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<p align="justify" style="font-size:16px; padding-right:1cm; padding-left:1cm;"><br/><br/>
<i>Register & Attend</i><br/>
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Our team visited many different schools in and close to Aachen. To give the students a better insight in the field of synthetic biology, we prepared project days in cooperation with the teachers. Our overall goal was to give them an understanding of synthetic biology and microbiology and introduce iGEM to them.<br/>
We successfully registered for the competition and are very excited to finally fly to Boston for the Giant Jamboree.
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<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm; font-size:16px;">We gave a presentation about synthetic biology, our project and the iGEM competition in general and afterwards gave a safety instruction and performed some experiments with them. During the visits, we were happy to answer all of their upcoming questions as they got more and more in touch with synthetic biology, our project and iGEM.</p>
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<img src="https://static.igem.org/mediawiki/2016/5/53/T--Aachen--medal_bronze.png" style="position:relative;top:50px; left: 20px; "/>
 
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<p align="justify" style="font-size:16px; margin-bottom:0px; padding-left:0.8cm;">Since we visited different grades with students of different ages, we adapted every presentation and each experiment to the particular school and their demands. After the experiments and the dialogue with the students we spend some time with the teachers to reflect on our visit. While talking to them we discovered the lack of possibilities for them to perform biological experiments in schools. To meet those needs, we created a collection of easy to understand experiments that do not require any specific equipment.<br/>
<i><u>Deliverables</u> (8/8)</i><br/><br/>
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<i>Team wiki</i><br/>
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As you can see here, we were able to create an awesome wiki to proudly present our results. <br/><br/>
+
<i>Poster</i><br/>
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We would like to invite everyone to come to our booth and check out our poster. <br/><br/>
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<i>Presentation</i><br/>
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We will give a presentation about our whole project at the Giant Jamboree. <br/><br/>
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<i><a href="https://2016.igem.org/Team:Aachen/Attributions">Project attribution</a></i><br/>
+
All of the work done for our project has been attributed properly.<br/><br/>
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<i><a href="https://2016.igem.org/Team:Aachen/Basic_Part">Registry part pages</a></i><br/>
+
To document the parts that we created in the course of our project, we prepared pages on the Registry which should help everyone use our parts in the most efficient way.<br/><br/>
+
<i>Sample submission</i><br/>
+
The DNA of our new parts were submitted to the Registry.<br/><br/>
+
<i>Safety forms</i><br/>
+
All safety forms were completed with great care.<br/><br/>
+
<i>Judging form</i><br/>
+
We completed the judging form to help judges evaluate us for prizes and awards.
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<img src="https://static.igem.org/mediawiki/2016/0/0d/T--Aachen--HP_Engagement-figure_2-st-ursula_monschau.jpg" style="position:relative;top:10px; left: 0px; "/>
<td style="width: 200px;">
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<figcaption  style="position:relative;top:10px; font-size:12px; "><i>figure 2: Two team members at "St.Ursula" school, Monschau</i></figcaption>
<img src="https://static.igem.org/mediawiki/2016/5/53/T--Aachen--medal_bronze.png" style="position:relative;top:50px; left: 20px; "/>
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<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm; font-size:16px;">
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<i><a href="https://2016.igem.org/Team:Aachen/Attributions">Attribution</a></i><br/>
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On our attribution page you can find a detailed description of who contributed to our project and how.<br/>
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<p align="justify"  style="font-size:16px; padding-left : 1cm; padding-right:1cm; margin-bottom:0px;"><b style="color:#005C04 ">Book of experiments </b> (To download the pdf-file, please click <a href="#" style="color: #0000EE;"><u>here</u></a>)<br/>
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<br/>
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<p align="justify"  style="font-size:16px; padding-left : 1cm; padding-right:1cm;"><b style="color:#005C04 "> Monschau </b>
 +
<br/>
 +
First, we visited a girl’s school in Monschau on 2 days. During the first one, we talked to several teachers to plan and prepare our visit. We benefit from the teacher’s hints about which topics might be interesting for the students. It was a great pedagogical experience for us, as we had to think of a way how to explain the biological topics to students who do not have a huge biological knowledge.<br/>
 +
We thought a lot about it and in the end, it was a great success. We could evoke curiosity and the girls asked a lot of questions about Synthetic Biology and iGEM.<br/>
 +
<br/>
 +
<b style="color:#005C04 "> Aachen</b><br/>
 +
Moreover, we visited the <i> St. Ursula </i> Gymnasium in Aachen and presented our work to students who were learned more details about biology in school. We planned the time for presentation again with the teachers and conducted experiments in the end which we adjusted to their level of knowledge. It turned out that many students were interested in choosing a biology-related topic as their study field. This led us to explaining more about our university and talking about different subjects which are interesting for example Synthetic Biology. Later, we had a lively talk with the teachers who gave us some feedback and discussed the role of genetic engineering in Germany. <br/><br/>
 +
 +
<b style="color:#005C04 ">Düsseldorf</b><br/>
 +
In Düsseldorf, in cooperation with 2 different schools, we organized a whole “Biotech-Day”. It was an interesting and challenging experience for us because there were 89 students for whom we needed to do a lot of preparation. But luckily, with the help of the teachers we managed to plan the day. We did not only present the theoretical background of our project, but also put emphasis on safety aspects related to synthetic biology and the experiments. Hence, we were able to initiate interesting conversations and discussed both, our project idea and the practical work in the lab.<br/>
 +
As we prepared some long term experiments, we visited the school again after 2 days and could show the results to them. On that day, they took the chance to ask more specific questions about about Synthetic Biology and our field of study. What looked like an overwhelming organizational challenge turned out to be a great experience with students not much younger than us.
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</p>
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<h2 style="border-bottom: 5px solid #005b04;padding-left: 1.0cm;">Post Card Project</h2>
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<img src="https://static.igem.org/mediawiki/2016/5/53/T--Aachen--medal_bronze.png" style="position:relative;top:50px; left: 20px; "/>
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<img src="https://static.igem.org/mediawiki/2016/c/cf/T--Aachen--collaboration-example-D%C3%BCsseldorf.png" style="position:relative;top:-10px; left:50px;"/>
 
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<i><a href="https://2016.igem.org/Team:Aachen/Basic_Part">Part / Contribution </a></i><br/>
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This year the iGEM Team Düsseldorf started a postcard project. Every participating team had to design their own, with the purpose to increase the knowledge about synthetic biology in the public. We thought it was a great idea, so we participated. These cards have first been distributed amongst all participating teams and then were distributed in different locations around each team’s hometown.
To our great satisfaction, we successfully documented multiple new standard BioBrick parts central to our project and submitted them to the Registry.<br/>
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<p align="justify"  style="font-size:16px; padding-left : 1cm; padding-right:1cm; margin-top:-25px">
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With our topic we wanted to inform people about synthetic biology and genetic engineering and show that they are present in their daily life, in an easily understandable way. <br/>
 +
Here, we want to thank once again the iGEM Team Düsseldorf for this great idea and the invitation to participate.<br/>
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Click on the postcard to see the <b>back</b>.
 
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<br/><br/>
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<p align="justify"  style="font-size:16px; padding-left : 1cm; padding-right:1cm;">
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<b>english translation:</b> <br/>
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What does <b>synthetic biology</b> even mean?<br/>
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The term “genetic engineering” is often mentioned in critical media reports and in this context cheese manufacturers more and more advertise with the promise that their products were made without this allegedly dangerous technology. We, as students of this field, would like to give you a better understanding of synthetic biology with the following example:
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Nowadays, you can find the declaration “without gene technology” on cheese packages. This does not refer to the actual ingredients of the product, but on the production method, so the cheese itself does not differ from “normal” one. Synthetic biology makes it possible to generate products with the help of genetically engineered microorganisms. In contrast, cheese without genetic engineering is produced with dried calf stomachs, which raises the question if this is more desirable.”
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            <h1 style="padding-left: 0.8cm;">Toxicological Assessment</h1>
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<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm; font-size:16px;">In order to evaluate the safety of the product we intend to produce, we made a toxicological assessment, considering how humans and the environment could be affected when getting in touch with it and how probable an exposure is. We collected all data we could on the substance we want to replace and the cleavage product of the protection group we intend to use and compared the required amounts for the existing solution to ours as well as the dangers both substances pose.</p>
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<h2 style="border-bottom: 5px solid #005b04;padding-left: 1.0cm;">Exposure</h2>
 
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<h2 style="padding-left: 1.0cm;  "><a name="silver"class="anchor"><b style="color:#c6c6c6">Silver (3/3)</b></a></h2>
 
  
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<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm;font-size:16px;">In our daily lives we get in touch with the contents of liquid washing detergents in several situations: <br/> <br/>
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<img src="https://static.igem.org/mediawiki/2016/c/ca/T--Aachen--medal_silver_small.png" style="position:relative;top:50px; left: 20px; "/>
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<img src="https://static.igem.org/mediawiki/2016/6/61/T--Aachen--icon_safety_production.png" style="position:relative;top:-10px; left: 60px; ">
 
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<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm;font-size:16px;"> <big><b style=" color:#005b04">A.&nbsp;Production</b></big><br/>
<i><a href="https://2016.igem.org/Team:Aachen/Basic_Part">Validated Part/Contribution</a></i><br/>
+
During production of washing detergents, the factory workers are potentially exposed to high doses of the inhibited protease. There is a risk of dermal contact and inhaling the compounds.  
In addition to the creation of new standard BioBrick Parts, we also experimentally validated the functionality of one of our parts and documented its characterization in the Registry.
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<td style="width: 200px;">
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<td style="width:200px;">
<img src="https://static.igem.org/mediawiki/2016/c/ca/T--Aachen--medal_silver_small.png" style="position:relative;top:50px; left: 20px; "/>
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<img src="https://static.igem.org/mediawiki/2016/c/c5/T--Aachen--icon_safety_home.png" style="position:relative;top:-5px; left: 60px; ">
 
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<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm; font-size:16px;">  
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<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm;font-size:16px;"> <big><b style=" color:#005b04">B.&nbsp;Home usage</b></big><br/>
<i><a href="https://2016.igem.org/Team:Aachen/Collaborations">Collaboration</a></i><br/>
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When washing at home the washing detergent can be spilled onto the skin of user. Thereafter residues of the washing liquid can remain in the clothes because of incomplete rinsing and cause dermal exposure.<br/><br/>
We gladly worked together with other teams to establish a mutual connection that would benefit both of our projects.
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<img src="https://static.igem.org/mediawiki/2016/c/ca/T--Aachen--medal_silver_small.png" style="position:relative;top:50px; left: 20px; "/>
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<img src="https://static.igem.org/mediawiki/2016/3/33/T--Aachen--icon_safety_drinking.png" style="position:relative;top:0px; left: 60px; ">
 
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<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm; font-size:16px;">
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<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm;font-size:16px;"> <big><b style="color:#005b04">C.&nbsp;Drinking water</b></big><br/>
<i><a href="https://2016.igem.org/Team:Aachen/Human_Practices">Human Practices </a></i><br/>
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Waterborne substances which cannot be filtered out in purification plants expose consumers via their drinking water.  
To examine our project from a different angle, we identified, investigated and addressed important issues outside of the lab.
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<h2 style="border-bottom: 5px solid #005b04;padding-left: 1.0cm;">Toxicology</h2>
 
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<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm;font-size:16px;"><big><b style="color:#005b04;">Toxicology of boric acid</b></big><br/>
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dermal:<br/>
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LD<sub>50</sub> rat&nbsp;<b>:</b> &nbsp;>&nbsp;2,000
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<span class="fraction" style="position:relative;top:-10px; left: -10px; ">
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  <span class="numerator">mg</span>
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  <span class="denominator">kg</span>
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</span>
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[<a href="#ref1safety"><u style="color:#0000EE;">1</u></a>]
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oral: <br/>
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LD<sub>50</sub> rat&nbsp;<b>:</b> &nbsp;2,660 
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<span class="fraction" style="position:relative;top:-10px; left: -10px; ">
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  <span class="numerator">mg</span>
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  <span class="denominator">kg</span>
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</span>
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[<a href="https://2016.igem.org/Team:Aachen/Safety#ref2safety"><u style="color:#0000EE; ">2</u></a>]
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<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm;font-size:16px;">
 +
Boric acid reacts with the polyhydroxyl ribitol side chain of riboflavin. This increases its water solubility and reduces the amount of available riboflavin in animals and man [<a href="#ref3safety"><u style="color:#0000EE; ">3</u></a>]<br/><br/>
 +
fatal dose human: [<a href="#ref4safety"><u style="color:#0000EE; ">4</u></a>]<br/>
 +
<ol style=" list-style-type: disc; padding-left:1cm; padding-right:1cm; align-content: center" >
 +
<li style="padding-right: 0.3cm;"><span>2,000 - 3,000 mg for infants</span></li>
 +
<li style="padding-right: 0.3cm;"><span>5,000 - 6,000 mg for children</span></li>
 +
<li style="padding-right: 0.3cm;"><span>15,000 - 20,000 mg for adults<span></span></li>
 +
</ol>
 
<br/>
 
<br/>
 +
<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm;font-size:16px;">
 +
inhaling:<br/>
  
<h2 style="border-bottom: 5px solid Black; padding-left: 1.0cm; "></h2>
+
LC<sub>50</sub>&nbsp;<b>:</b> &nbsp;>&nbsp;0.16 
 +
<span class="fraction" style="position:relative;top:-10px; left: -10px; ">
 +
  <span class="numerator">mg</span>
 +
  <span class="denominator">L &#8729; hr</span>
 +
</span>
 +
[<a href="#ref5safety"><u style="color:#0000EE; ">5</u></a>]
 +
 
 +
<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm;font-size:16px;">
 +
reprotox:<br/>
 +
Boric acid is classified as substance of very high concern [<a href="#ref6safety"><u style="color:#0000EE; ">6</u></a>] and is toxic for fertility. [<a href="#ref7safety"><u style="color:#0000EE; ">7-8</u></a>]<br/><br/></br>
 +
 
 +
<big><b style="color:#005b04;">Toxicology of photocaged amino acids and their cleavage products</b></big><br/>
 +
ONBY (Ortho-nitrobenzyl-tyrosine) and DMNBS (dimethyl-nitrobenzyl-serine) and their cleavage products ONB (2-nitrosobenzaldelyde) and DMNB (Dimethyl-nitrosobenzaldehyde) are not yet characterized in toxicology. Approximate predictions can be made through known data about similar chemicals as other nitroso compounds.<br/>
 +
 
 +
<img src="https://static.igem.org/mediawiki/2016/2/24/T--Aachen--onbtyrosincleavagereaction.png">
 +
<figcaption style="text-align:center; font-size: 15px; "><b>Figure 1: ONB-tyrosine cleavage reaction</b></figcaption>
 +
 
 +
 
 +
<img src="https://static.igem.org/mediawiki/2016/8/83/T--Aachen--dmnbscleavagereaction.png">
 +
<figcaption style="text-align:center; font-size: 15px; "><b>Figure 2: DMNB-serine cleavage reaction</b></figcaption><br/></br>
 +
 
 +
 
 +
<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm;font-size:16px;"><big><b style="color:#005b04;">Nitrosobenzene</b></big><br/>
 +
Nitrosobenzene reacts in the human blood circulation with hemoglobin and minimizes its ability of O<sub>2</sub> uptake.[<a href="#ref9safety"><u style="color:#0000EE; ">9</u></a>]
 +
Acute and chronic toxicity data are unavailable.<br/><br/></br>
 +
 
 +
<big><b style="color:#005b04;">Other protection groups</b></big><br/>
 +
 
 +
To avoid the risks of the nitrosobenzyl derivatives there are a lot of different photo protection groups which could be used instead of the ONB and DMNB.[<a href="#ref10safety"><u style="color:#0000EE; ">10</u></a>]
 +
</p></br>
 +
<h2 style="border-bottom: 5px solid #005b04;padding-left: 1.0cm;">Comparative toxicological risk assessment</h2>
 
<br/>
 
<br/>
 +
<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm;font-size:16px;">In absence of solid toxicity data predominantly for the cleavage products of the photo protection group of the enzyme it is difficult to impossible to conclude on the comparative risk assessment.<br/><br/>
 +
 +
Assuming that both boric acid and the photo cleavage degradation product have similar toxicities the project approach had a clear advantage because of the much lower concentration in the product. While there are 0.01617 moles boric acid per kg laundry detergent the concentration of the photocaged amino acid is only 3,6&nbsp;&#8729;&nbsp;10<sup>-9</sup> moles per kg. For every photocaged molecule of amino acid one molecule of protection group exits.<br/><br/>
 +
 +
The common liquid laundry detergent contains 0.5&nbsp;-&nbsp;1% (w/w) of boric acid and 0.00005&nbsp;-&nbsp;0.0001% (w/w) active protease. [<a href="#ref11safety"><u style="color:#0000EE; ">11</u></a>] <br/><br/></br>
 +
 +
<big><b style="color:#005b04;">Molecules of subtilisin in 100&nbsp;g of liquid laundry detergent</b></big><br/>
 +
For the molecular weight of subtilisin E we pasted our known amino acid sequence of 275 AAs into a calculation tool, the DNA sequence can be seen in part BBa_K2020023 [<a href="#ref12safety"><u style="color:#0000EE; ">12</u></a>]<br/></br>
 +
 +
weight of 1 molecule subtilisin E&nbsp;=&nbsp; 27.02 kDa<br/><br/>
 +
 +
M (subtilisin E) &nbsp;=&nbsp; 27701.06
 +
<span class="fraction" style="position:relative;top:-10px; left:0px; ">
 +
<span class="numerator">g</span>
 +
  <span class="denominator">mol</span>
 +
</span>
 
<br/>
 
<br/>
<h2 style="padding-left:1.0cm; padding-right:1.0cm; "><a name="gold"class="anchor"><b style="color: #ffc20b">Gold (4/4)</b></a></h2>
 
  
 +
m (subtilisin E)&nbsp;=&nbsp; 0.0001%&nbsp;&#8729;&nbsp;100 g&nbsp;=&nbsp;0.0001 g<br/><br/>
  
<table  align="center" style=" border-collapse:separate; border: 0px ;border-spacing:30px;margin-left:20px;margin-right:80px; margin-top:0px;width: 910px; table-layout: fixed; ">
+
n (subtilisin E)&nbsp;=
<tr>
+
<span class="fraction" style="position:relative;top:-10px; left:0px; ">
<td style="width: 200px;">
+
<span class="numerator">0.0001 g</span>
<img src="https://static.igem.org/mediawiki/2016/f/f1/T--Aachen--medal_gold_small.png" style="position:relative;top:50px; left: 20px; "/>
+
  <span class="denominator">27701.06 g</span>
</td>
+
</span>
<td>
+
mol&nbsp;=&nbsp;3.6&nbsp;&#8729;&nbsp;10<sup>-9</sup> mol<br/><br/>
<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm; font-size:16px;">  
+
 
<i><a href="https://2016.igem.org/Team:Aachen/Integrated_Practices">Integrated Human Practices</a></i><br/>
+
molecules of boric acid in 100 g liquid laundry detergent<br/><br/>
In due consideration of the results of our Human Practice work, we improved the final design of our project.
+
 
 +
M (boric acid)&nbsp;= &nbsp;61.83<span class="fraction" style="position:relative;top:-10px; left:0px; ">
 +
<span class="numerator">g</span>
 +
  <span class="denominator">mol</span>
 +
</span>
 +
<br/>
 +
 
 +
m (boric acid)&nbsp;=&nbsp; 1%&nbsp;&#8729;&nbsp;100 g&nbsp;=&nbsp;1 g<br/><br/>
 +
 
 +
n (boric acid)&nbsp;=&nbsp;
 +
<span class="fraction" style="position:relative;top:-10px; left:0px;">
 +
<span class="numerator">1 g</span>
 +
  <span class="denominator">61.83 g</span>
 +
</span>
 +
mol&nbsp;=&nbsp;0.01617 mol<br/><br/>
 +
 
 +
molecules of boric acid per molecule of subtilisin E<br/><br/>
 +
<span class="fraction" style="position:relative;top:-10px; left:0px;">
 +
<span class="numerator">n (boric acid)</span>
 +
  <span class="denominator">n (subtilisin E)</span>
 +
</span>
 +
=&nbsp; 448300<br/><br/>
 +
 
 +
<h2 style="border-bottom: 5px solid #005b04;padding-left: 1.0cm;">Conclusion</h2>
 +
<br/>
 +
<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm;font-size:16px;">As the concentration of cleaved photo protection groups is almost 500,000 times lower than the concentration of boric acid its toxicity is allowed to be 448,000 fold higher for the same toxicity of the liquid washing detergent. If the toxicity of cleavage products is less than 448,000 fold higher than the toxicity of boric acid, washing detergents with replaced boric acid were less toxic than the actual. <br/><br/></br>
 +
<big><b style="color:#005b04;">Example for one washing cycle (100 g liquid laundry detergent)</b></big><br/>
 +
For this calculation we assume that 1% of the liquid detergent stays in the laundry after washing and the composition is like in the calculation above. <br/><br/></br>
 +
 
 +
<big><b style="color:#005b04;">DMNB and ONB group</b></big><br/>
 +
 
 +
n (cleaved group)&nbsp;=&nbsp;n (subtilisin E)&nbsp;=&nbsp; 1%&nbsp;&#8729;
 +
<span class="fraction" style="position:relative;top:-10px; left: -10px; ">
 +
<span class="numerator">0.0001 g</span>
 +
  <span class="denominator">27701.06 g</span>
 +
</span>mol = 3.6 &nbsp;&#8729;&nbsp;10<sup>-11</sup> mol<br/>
 +
 
 +
 
 +
M (DMNB)&nbsp;=&nbsp;195
 +
<span class="fraction" style="position:relative;top:-10px; left: -10px; ">
 +
  <span class="numerator">g</span>
 +
  <span class="denominator">mol</span>
 +
</span><br/>
 +
 
 +
M (ONB)&nbsp;=&nbsp;135
 +
<span class="fraction" style="position:relative;top:-10px; left: -10px; ">
 +
  <span class="numerator">g</span>
 +
  <span class="denominator">mol</span>
 +
</span><br/>
 +
 
 +
m (DMNB)&nbsp;=&nbsp; 7&nbsp;&#8729;&nbsp;10<sup>-9</sup> g<br/><br/>
 +
m (ONB)&nbsp;=&nbsp; 4.9&nbsp;&#8729;&nbsp;10<sup>-9</sup> g<br/><br/></br>
 +
 
 +
<big><b style="color:#005b04;">Boric acid</b></big><br/>
 +
1%&nbsp;&#8729;&nbsp;1 g&nbsp;=&nbsp;0.01 g<br/><br/>
 +
 
 +
In this scenario 0.1 g of boric acid or 7 ng of DMNB or 4.9 ng of ONB remain in the laundry. <br/><br/></br>
 +
 
 +
<big><b style="color:#005b04;">Comparative environmental risk assessment</b></big><br/>
 +
The diluted compounds of washing detergents end up in the waste water and consequently in the waste water treatment plant. <br/><br/>
 +
 
 +
Boric acid is highly water soluble and can be neither eliminated in the waste water treatment plant nor in the drinking water purification plant. [<a href="#ref13safety"><u style="color:#0000EE; ">13</u></a>] <br/><br/>
 +
 
 +
The LIPs products are organic products which could be eliminated by a biological waste water treatment plant but this remains to be verified as there is no related data available. As organic compounds they could most likely be filtered by active charcoal and others whereby human exposure by the drinking water can be excluded. <br/><br/></br>
 +
 
 +
 
 +
        <div class=" content_area structure">
 +
            <div class="single_header_title">
 +
            <h1 style="padding-left: 0.8cm;">Laboratory Satefy Aspects</h1>
 +
            </div>
 +
 
 +
<h2 style="border-bottom: 5px solid #005b04;padding-left: 1.0cm;">Used organism strains</h2></br>
 +
<p align="justify" style="padding-left:1.0cm; padding-right:1.0cm; font-size: 16px;">
 +
<ol style=" list-style-type: disc; padding-left:1.5cm; padding-right:1.5cm;  align-content: center" >
 +
<li><span><i>Escherichia coli</i> DH5&alpha;</span></li>
 +
<li><span><i>Escherichia coli</i> BL21 DE3</span></li>
 +
<li><span><i>Saccharomyces cerevisiae</i></span></li>
 +
<li><span><i>Bacillus subtilis</i></span></li>
 +
</ol>
 +
</br>
 
</p>
 
</p>
</td>
 
</tr>
 
  
<tr>
+
 
<td style="width: 200px;">
+
<h2 style="border-bottom: 5px solid #005b04;padding-left: 1.0cm;">Potential risks</h2></br>
<img src="https://static.igem.org/mediawiki/2016/f/f1/T--Aachen--medal_gold_small.png" style="position:relative;top:50px; left: 20px; "/>
+
<p align="justify" style="padding-left:1.0cm; padding-right:1.0cm; font-size: 16px;">
</td>
+
Our project pose the typical risks of working in a biology lab. So we reduce those risks by fulfilling safety level 1 procedures as seen below.</br></br></br>
<td>
+
 
<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm; font-size:16px;">  
+
<big><b style="color:#005b04;">Waste treatment:</b></big><br/>
<i><a href="https://2016.igem.org/Team:Aachen/Description">Improvement of a previous part or project</a></i><br/>
+
All biological materials (including genetically modified organism (abbreviation GMO)) or equipment, that was used for handling, is collected separately and autoclaved.</br></br></br>
We continued the work of the iGEM team Texas Austin 2014 and improved their measurement kit to effectively quantify the incorporation-efficiency of a tRNA-synthetases-pair. We successfully used the improved kit in the course of our project and made it available for everyone by submitting it to the Registry in the BioBrick standard.
+
 
 +
<big><b style="color:#005b04;">Transportation:</b></big><br/>
 +
Closed boxes will be used for transportation between labs but if possible, transportation between labs should be avoided.</br></br></br>
 +
 
 +
<big><b style="color:#005b04;">Emergency reaction:</b></big><br/>
 +
<ol style=" list-style-type: disc; padding-left:1.5cm; padding-right:1.5cm;  align-content: center" >
 +
<li><span>If lab coats or clothes start burning, use emergency showers.</span></li>
 +
<li><span>If acids or other harmful liquids get into the eyes, use eye showers.</span></li>
 +
<li><span>If injuries occurred, treat them with first aid-kits, report the injury, and go to the hospital if necessary.</span></li>
 +
<li><span>If solutions with GMO is running down the bench (or other kinds of contamination), swap it and disinfect the place with bacilol or Ethanol (70 %).</span></li>
 +
</ol>
 +
</br>
 
</p>
 
</p>
</td>
 
</tr>
 
  
<tr>
+
<p align="justify" style="padding-left:1.0cm; padding-right:1.0cm; font-size: 16px;">
<td style="width: 200px;">
+
<big><b style="color:#005b04;">Protective equipment:</b></big><br/>
<img src="https://static.igem.org/mediawiki/2016/f/f1/T--Aachen--medal_gold_small.png" style="position:relative;top:50px; left: 20px; "/>
+
<ol style=" list-style-type: disc; padding-left:1.5cm; padding-right:1.5cm; align-content: center" >
</td>
+
<li><span>Lab coats are mandatory.</span></li>
<td>
+
<li><span>Safety glasses are mandatory in special arias of the lab and should be used in other arias if necessary.</span></li>
<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm; font-size:16px;">  
+
<li><span>Usage of safety gloves are mandatory in special arias of the lab and should be used depending on the working materials.</span></li>
<i><a href="https://2016.igem.org/Team:Aachen/Proof">Proof of concept</a></i><br/>
+
</ol></br>
With one of our newly created BioBricks, we were able to prove that the principle of our project is functional.
+
 
</p>
 
</p>
</td>
 
</tr>
 
  
<tr>
+
<p align="justify" style="padding-left:1.0cm; padding-right:1.0cm; font-size: 16px;">
<td style="width: 200px;">
+
<big><b style="color:#005b04;">Other rules:</b></big><br/>
<img src="https://static.igem.org/mediawiki/2016/f/f1/T--Aachen--medal_gold_small.png" style="position:relative;top:50px; left: 20px; "/>
+
<ol style=" list-style-type: disc; padding-left:1.5cm; padding-right:1.5cm;  align-content: center" >
</td>
+
<li><span>Do not work alone. There should be at least one person from the lab, who is not part of the iGEM team.</span></li>
<td>
+
<li><span>Do not pipette with your mouth.</span></li>
<p align="justify" style="padding-left: 1.0cm; padding-right: 1.0cm; font-size:16px;">  
+
<li><span>Disinfect hands after contamination with GMOs.</span></li>
<i><a href="https://2016.igem.org/Team:Aachen/Demonstrate">Demonstrate</a></i><br/>
+
<li><span>Disinfect hands and wash them after working in the lab.</span></li>
Due to simulations in our lab, we were able to show that our project will work under real-life conditions.
+
</ol></br>
 +
</p>
 +
<p align="justify" style="padding-left:1.0cm; padding-right:1.0cm; font-size: 16px;">
 +
Furthermore our project includes the handling of non-canonical amino acids, which we treat according to their special requirements.</br></br>
 +
</p>
 +
 
 +
 
 +
<h2 style="border-bottom: 5px solid #005b04;padding-left: 1.0cm;">Laws and regulations regarding biosafety in germany</h2></br>
 +
<p align="justify" style="padding-left:1.0cm; padding-right:1.0cm; font-size: 16px;">
 +
<ol style=" list-style-type: disc; padding-left:1.5cm; padding-right:1.5cm;  align-content: center" >
 +
<li><span><a href="http://www.bgbl.de/banzxaver/bgbl/start.xav?startbk=Bundesanzeiger_BGBl&jumpTo=bgbl110s1934.pdf"><u style="color:#0000EE; ">Gesetz zur Regelung der Gentechnik: Bundesgesetzblatt (year 2010, page 1934, in german)</u></a></span></li>
 +
<li><span><a href="http://www.bgbl.de/banzxaver/bgbl/start.xav?startbk=Bundesanzeiger_BGBl&jumpTo=bgbl113s2514.pdf"><u style="color:#0000EE; ">Biostoffverordnung: Bundesgesetzblatt (year 2013, page 2514, in german)</u></a></span></li>
 +
</ol></br></br>
 +
</p>
 +
 
 +
 
 +
        <div class=" content_area structure">
 +
            <div class="single_header_title">
 +
            <h1 style="padding-left: 0.8cm;">References</h1>
 +
            </div><p align="justify" style="padding-left:1.0cm; padding-right:1.0cm; font-size: 16px;">
 +
 
 +
<a name="ref1safety" class="anchor" style="color:Black">[1]<span style="padding-left: 0.5cm; ">Krieger, R. (ed.). Handbook of Pesticide Toxicology. Volume 2, 2nd ed. 2001. Academic Press, San Diego, California., p. 1414</a></span>
 +
 
 +
<a name="ref2safety" class="anchor" style="color:Black">[2]<span style="padding-left: 0.5cm; ">Lewis, R.J. Sr. (ed) Sax's Dangerous Properties of Industrial Materials. 11th Edition. Wiley-Interscience, Wiley & Sons, Inc. Hoboken, NJ. 2004., p. 536</a></span>
 +
 
 +
<a name="ref3safety" class="anchor" style="color:Black">[3]<span style="padding-left: 0.5cm; ">Pinto JT, Rivlin S; Drug Nutr Interact 5 (3): 143-51 (1987)</a></span>
 +
 
 +
<a name="ref4safety" class="anchor" style="color:Black">[4]<span style="padding-left: 0.5cm; ">Krieger, R. (ed.). Handbook of Pesticide Toxicology. Volume 2, 2nd ed. 2001. Academic Press, San Diego, California., p. 1414</a></span>
 +
 
 +
<a name="ref5safety" class="anchor" style="color:Black">[5]<span style="padding-left: 0.5cm; ">European Chemicals Bureau; IUCLID Dataset for Boric Acid (10043-35-3), p.26 (2000 CD-ROM edition). Available from, as of October 3, 2011</a></span>
 +
 
 +
<a name="ref6safety" class="anchor" style="color:Black">[6]<span style="padding-left: 0.5cm; ">https://echa.europa.eu/documents/10162/eda75e03-fdd8-4256-81e8-73d59b0647e5</a></span>
 +
 
 +
<a name="ref7safety" class="anchor" style="color:Black">[7]<span style="padding-left: 0.5cm; ">http://www.heraproject.com/files/27-F-06_HERA_Boric_Acid%20_Jan_2005.pdf</a></span>
 +
 
 +
<a name="ref8safety" class="anchor" style="color:Black">[8]<span style="padding-left: 0.5cm; ">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1566645/</a></span>
 +
 
 +
<a name="ref9safety" class="anchor" style="color:Black">[9]<span style="padding-left: 0.5cm; ">http://www.ipa.ruhr-uni-bochum.de/pdf/IPA-Journal_1401_Anilin.pdf</a></span>
 +
 
 +
<a name="ref10safety" class="anchor" style="color:Black">[10]<span style="padding-left: 0.3cm; ">Photoremovable Protecting Groups in Chemistry and Biology: Reaction Mechanisms and Efficacy; Petr Klán, Tomáš Šolomek, Christian G. Bochet, Aurélien Blanc,<i>∥</i> Richard Givens,
 +
Marina Rubina, Vladimir Popik, Alexey Kostikov and Jakob Wirz (2012)
 +
</a></span>
 +
 
 +
<a name="ref11safety" class="anchor" style="color:Black">[11]<span style="padding-left: 0.3cm; ">Marktforschung Dalli-Werke Stolberg GmbH & Co. KG</a></span>
 +
 
 +
<a name="ref12safety" class="anchor" style="color:Black">[12]<span style="padding-left: 0.3cm; ">http://www.sciencegateway.org/tools/proteinmw.htm</a></span>
 +
 
 +
<a name="ref13safety" class="anchor" style="color:Black">[13]<span style="padding-left: 0.3cm; ">http://www.fachdokumente.lubw.baden-wuerttemberg.de/servlet/is/102102/U12-S5-N02.pdf?command=downloadContent&filename=U12-S5-N02.pdf</a></span>
 +
 
 
</p>
 
</p>
</td>
 
</tr>
 
  
</table>
 
<br/>
 
<br/>
 
  
       
+
</div>
     
+
  
 
</div>
 
</div>

Revision as of 11:31, 18 October 2016

Welcome to iGEM Aachen 2016

Public Engagement

Everything related to our mission of spreading the thought of iGEM and especially the part of synthetic biology is listed below.

Spreading the News


We wished to get in touch with as many people as possible. Hence, for presenting our work without us being physically there, we developed several ways to spread information about our project and the idea of Synthetic Biology.



Newsletter
From the beginning on, we received a lot of support from various sides and many people were interested in our project. That is why we thought of a way to inform them all at the same time about our progress and developed a monthly newsletter. It was sent to all of our supporters and everybody who opted in. With the newsletter we intended to explain our project to people with and without scientific background and therefore developed a short and an extended version. Writing it helped us reflecting and also preparing for the wiki. We even received suggestions from experts who read about our main challenges in the newsletter.


Flyer Distribution
Our flyer was created in the beginning of our project to give interested supporters a short overview about our idea and to inform people about what we are doing throughout this half year of participating in iGEM.
As iGEM is a great opportunity and experience for everybody - not only university students - and as we could not visit as many schools as we wished, we also sent an adapted version of the flyer with additional information about the competition to about 300 different schools.


Presenting iGEM and Our Project at Schools

figure 1 "FCG" school in Düsseldorf



Our team visited many different schools in and close to Aachen. To give the students a better insight in the field of synthetic biology, we prepared project days in cooperation with the teachers. Our overall goal was to give them an understanding of synthetic biology and microbiology and introduce iGEM to them.


We gave a presentation about synthetic biology, our project and the iGEM competition in general and afterwards gave a safety instruction and performed some experiments with them. During the visits, we were happy to answer all of their upcoming questions as they got more and more in touch with synthetic biology, our project and iGEM.

Since we visited different grades with students of different ages, we adapted every presentation and each experiment to the particular school and their demands. After the experiments and the dialogue with the students we spend some time with the teachers to reflect on our visit. While talking to them we discovered the lack of possibilities for them to perform biological experiments in schools. To meet those needs, we created a collection of easy to understand experiments that do not require any specific equipment.

figure 2: Two team members at "St.Ursula" school, Monschau

Book of experiments (To download the pdf-file, please click here)

Monschau
First, we visited a girl’s school in Monschau on 2 days. During the first one, we talked to several teachers to plan and prepare our visit. We benefit from the teacher’s hints about which topics might be interesting for the students. It was a great pedagogical experience for us, as we had to think of a way how to explain the biological topics to students who do not have a huge biological knowledge.
We thought a lot about it and in the end, it was a great success. We could evoke curiosity and the girls asked a lot of questions about Synthetic Biology and iGEM.

Aachen
Moreover, we visited the St. Ursula Gymnasium in Aachen and presented our work to students who were learned more details about biology in school. We planned the time for presentation again with the teachers and conducted experiments in the end which we adjusted to their level of knowledge. It turned out that many students were interested in choosing a biology-related topic as their study field. This led us to explaining more about our university and talking about different subjects which are interesting for example Synthetic Biology. Later, we had a lively talk with the teachers who gave us some feedback and discussed the role of genetic engineering in Germany.

Düsseldorf
In Düsseldorf, in cooperation with 2 different schools, we organized a whole “Biotech-Day”. It was an interesting and challenging experience for us because there were 89 students for whom we needed to do a lot of preparation. But luckily, with the help of the teachers we managed to plan the day. We did not only present the theoretical background of our project, but also put emphasis on safety aspects related to synthetic biology and the experiments. Hence, we were able to initiate interesting conversations and discussed both, our project idea and the practical work in the lab.
As we prepared some long term experiments, we visited the school again after 2 days and could show the results to them. On that day, they took the chance to ask more specific questions about about Synthetic Biology and our field of study. What looked like an overwhelming organizational challenge turned out to be a great experience with students not much younger than us.

Post Card Project


This year the iGEM Team Düsseldorf started a postcard project. Every participating team had to design their own, with the purpose to increase the knowledge about synthetic biology in the public. We thought it was a great idea, so we participated. These cards have first been distributed amongst all participating teams and then were distributed in different locations around each team’s hometown.

With our topic we wanted to inform people about synthetic biology and genetic engineering and show that they are present in their daily life, in an easily understandable way.
Here, we want to thank once again the iGEM Team Düsseldorf for this great idea and the invitation to participate.
Click on the postcard to see the back.



english translation:
What does synthetic biology even mean?
The term “genetic engineering” is often mentioned in critical media reports and in this context cheese manufacturers more and more advertise with the promise that their products were made without this allegedly dangerous technology. We, as students of this field, would like to give you a better understanding of synthetic biology with the following example: Nowadays, you can find the declaration “without gene technology” on cheese packages. This does not refer to the actual ingredients of the product, but on the production method, so the cheese itself does not differ from “normal” one. Synthetic biology makes it possible to generate products with the help of genetically engineered microorganisms. In contrast, cheese without genetic engineering is produced with dried calf stomachs, which raises the question if this is more desirable.”

Toxicological Assessment

In order to evaluate the safety of the product we intend to produce, we made a toxicological assessment, considering how humans and the environment could be affected when getting in touch with it and how probable an exposure is. We collected all data we could on the substance we want to replace and the cleavage product of the protection group we intend to use and compared the required amounts for the existing solution to ours as well as the dangers both substances pose.

Exposure


In our daily lives we get in touch with the contents of liquid washing detergents in several situations:

A. Production
During production of washing detergents, the factory workers are potentially exposed to high doses of the inhibited protease. There is a risk of dermal contact and inhaling the compounds.

B. Home usage
When washing at home the washing detergent can be spilled onto the skin of user. Thereafter residues of the washing liquid can remain in the clothes because of incomplete rinsing and cause dermal exposure.

C. Drinking water
Waterborne substances which cannot be filtered out in purification plants expose consumers via their drinking water.

Toxicology


Toxicology of boric acid
dermal:
LD50 rat :  > 2,000 mg kg [1]

oral:
LD50 rat :  2,660 mg kg [2]

Boric acid reacts with the polyhydroxyl ribitol side chain of riboflavin. This increases its water solubility and reduces the amount of available riboflavin in animals and man [3]

fatal dose human: [4]

  1. 2,000 - 3,000 mg for infants
  2. 5,000 - 6,000 mg for children
  3. 15,000 - 20,000 mg for adults

inhaling:
LC50 :  > 0.16 mg L ∙ hr [5]

reprotox:
Boric acid is classified as substance of very high concern [6] and is toxic for fertility. [7-8]


Toxicology of photocaged amino acids and their cleavage products
ONBY (Ortho-nitrobenzyl-tyrosine) and DMNBS (dimethyl-nitrobenzyl-serine) and their cleavage products ONB (2-nitrosobenzaldelyde) and DMNB (Dimethyl-nitrosobenzaldehyde) are not yet characterized in toxicology. Approximate predictions can be made through known data about similar chemicals as other nitroso compounds.

Figure 1: ONB-tyrosine cleavage reaction
Figure 2: DMNB-serine cleavage reaction


Nitrosobenzene
Nitrosobenzene reacts in the human blood circulation with hemoglobin and minimizes its ability of O2 uptake.[9] Acute and chronic toxicity data are unavailable.


Other protection groups
To avoid the risks of the nitrosobenzyl derivatives there are a lot of different photo protection groups which could be used instead of the ONB and DMNB.[10]


Comparative toxicological risk assessment


In absence of solid toxicity data predominantly for the cleavage products of the photo protection group of the enzyme it is difficult to impossible to conclude on the comparative risk assessment.

Assuming that both boric acid and the photo cleavage degradation product have similar toxicities the project approach had a clear advantage because of the much lower concentration in the product. While there are 0.01617 moles boric acid per kg laundry detergent the concentration of the photocaged amino acid is only 3,6 ∙ 10-9 moles per kg. For every photocaged molecule of amino acid one molecule of protection group exits.

The common liquid laundry detergent contains 0.5 - 1% (w/w) of boric acid and 0.00005 - 0.0001% (w/w) active protease. [11]


Molecules of subtilisin in 100 g of liquid laundry detergent
For the molecular weight of subtilisin E we pasted our known amino acid sequence of 275 AAs into a calculation tool, the DNA sequence can be seen in part BBa_K2020023 [12]

weight of 1 molecule subtilisin E =  27.02 kDa

M (subtilisin E)  =  27701.06 g mol
m (subtilisin E) =  0.0001% ∙ 100 g = 0.0001 g

n (subtilisin E) = 0.0001 g 27701.06 g mol = 3.6 ∙ 10-9 mol

molecules of boric acid in 100 g liquid laundry detergent

M (boric acid) =  61.83 g mol
m (boric acid) =  1% ∙ 100 g = 1 g

n (boric acid) =  1 g 61.83 g mol = 0.01617 mol

molecules of boric acid per molecule of subtilisin E

n (boric acid) n (subtilisin E) =  448300

Conclusion


As the concentration of cleaved photo protection groups is almost 500,000 times lower than the concentration of boric acid its toxicity is allowed to be 448,000 fold higher for the same toxicity of the liquid washing detergent. If the toxicity of cleavage products is less than 448,000 fold higher than the toxicity of boric acid, washing detergents with replaced boric acid were less toxic than the actual.


Example for one washing cycle (100 g liquid laundry detergent)
For this calculation we assume that 1% of the liquid detergent stays in the laundry after washing and the composition is like in the calculation above.


DMNB and ONB group
n (cleaved group) = n (subtilisin E) =  1% ∙ 0.0001 g 27701.06 g mol = 3.6  ∙ 10-11 mol
M (DMNB) = 195 g mol
M (ONB) = 135 g mol
m (DMNB) =  7 ∙ 10-9 g

m (ONB) =  4.9 ∙ 10-9 g


Boric acid
1% ∙ 1 g = 0.01 g

In this scenario 0.1 g of boric acid or 7 ng of DMNB or 4.9 ng of ONB remain in the laundry.


Comparative environmental risk assessment
The diluted compounds of washing detergents end up in the waste water and consequently in the waste water treatment plant.

Boric acid is highly water soluble and can be neither eliminated in the waste water treatment plant nor in the drinking water purification plant. [13]

The LIPs products are organic products which could be eliminated by a biological waste water treatment plant but this remains to be verified as there is no related data available. As organic compounds they could most likely be filtered by active charcoal and others whereby human exposure by the drinking water can be excluded.


Laboratory Satefy Aspects

Used organism strains


  1. Escherichia coli DH5α
  2. Escherichia coli BL21 DE3
  3. Saccharomyces cerevisiae
  4. Bacillus subtilis

Potential risks


Our project pose the typical risks of working in a biology lab. So we reduce those risks by fulfilling safety level 1 procedures as seen below.


Waste treatment:
All biological materials (including genetically modified organism (abbreviation GMO)) or equipment, that was used for handling, is collected separately and autoclaved.


Transportation:
Closed boxes will be used for transportation between labs but if possible, transportation between labs should be avoided.


Emergency reaction:

  1. If lab coats or clothes start burning, use emergency showers.
  2. If acids or other harmful liquids get into the eyes, use eye showers.
  3. If injuries occurred, treat them with first aid-kits, report the injury, and go to the hospital if necessary.
  4. If solutions with GMO is running down the bench (or other kinds of contamination), swap it and disinfect the place with bacilol or Ethanol (70 %).

Protective equipment:

  1. Lab coats are mandatory.
  2. Safety glasses are mandatory in special arias of the lab and should be used in other arias if necessary.
  3. Usage of safety gloves are mandatory in special arias of the lab and should be used depending on the working materials.

Other rules:

  1. Do not work alone. There should be at least one person from the lab, who is not part of the iGEM team.
  2. Do not pipette with your mouth.
  3. Disinfect hands after contamination with GMOs.
  4. Disinfect hands and wash them after working in the lab.

Furthermore our project includes the handling of non-canonical amino acids, which we treat according to their special requirements.

Laws and regulations regarding biosafety in germany


  1. Gesetz zur Regelung der Gentechnik: Bundesgesetzblatt (year 2010, page 1934, in german)
  2. Biostoffverordnung: Bundesgesetzblatt (year 2013, page 2514, in german)