Difference between revisions of "Team:Paris Bettencourt/Parts"

(Prototype team page)
 
Line 1: Line 1:
−
{{Paris_Bettencourt}}
+
{{Paris_Bettencourt/Menu}}
 +
{{Paris_Bettencourt/Wiki}}
 +
 
 +
                                            <!-- Code by the 2016 Paris Bettencourt -->
 +
 
 
<html>
 
<html>
 +
<link href='https://fonts.googleapis.com/css?family=Open+Sans:400,300,700' rel='stylesheet' type='text/css'>
 +
<style>
 +
a:hover {
 +
text-decoration : none;
 +
}
  
 +
html {
 +
height : 100%;
 +
}
  
 +
body {
 +
position : relative;
 +
height : 100%;
 +
margin-left : 0;
 +
margin-right : 0;
 +
margin-top : 0;
 +
}
  
 +
#topheader {
 +
position : relative;
 +
margin-top : -80px;
 +
margin-left : 0px;
 +
margin-right : 0;
 +
padding:0;
 +
width : 100%;
 +
height : 400px;
 +
background-image : url("https://static.igem.org/mediawiki/2016/1/10/T--Paris_Bettencourt--Achievements.jpg");
 +
background-size : cover;
 +
}
  
 +
#subheader {
 +
position : relative ;
 +
width : 100%;
 +
height : 470px;
 +
text-align : center;
 +
background-color : rgb(255,255,255);
 +
}
  
 +
#definition {
 +
width : 80%;
 +
vertical-align : middle;
 +
display : inline-block;
 +
line-height : normal;
 +
text-align : center;
 +
position : relative;
 +
margin-top : 0px;
 +
}
  
−
<div class="column full_size">
+
#project {
 +
font-family: Open Sans, sans-serif;
 +
text-align : center;
 +
font-size : 22px;
 +
vertical-align : middle;
 +
color : rgb(150,149,149);
 +
}
 +
.definition {
 +
position : inline-block;
 +
font-family: Open Sans, sans-serif;
 +
text-align : center;
 +
font-size : 22px;
 +
vertical-align : middle;
 +
color : rgb(150,149,149);
 +
}
  
 +
                .descript2 {
 +
                        width : 60%;
 +
                        margin-left : 0%;
 +
                        font-size : 18px;
 +
                        text-align : center;
 +
                        color : rgb(255,0,99);
 +
                        margin-top : 0px;
 +
                        display : none;
 +
                        vertical-align : middle;
 +
                        line-height : normal;
 +
                        background-color : transparent;
 +
                        z-index : 91;
 +
                }
  
−
<p>Each team will make new parts during iGEM and will submit them to the Registry of Standard Biological Parts. The iGEM software provides an easy way to present the parts your team has created. The <code>&lt;groupparts&gt;</code> tag (see below) will generate a table with all of the parts that your team adds to your team sandbox.</p>
+
.layout {
−
<p>Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without needing to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.</p>
+
display : inline-block;
 +
width : 100%;
 +
height : 100%;
 +
z-index : 90;
 +
vertical-align : middle;
 +
line-height : 300px;
 +
text-align : center;
 +
display: flex;
 +
justify-content: center;
 +
align-items: center;
 +
-webkit-display: flex;
 +
-webkit-justify-content: center;
 +
-webkit-align-items: center;
 +
                        vertical-align : middle;
 +
}
  
 +
                .separation {
 +
                        width: 100%;
 +
                        height : 100px;
 +
                }
  
−
</div>
+
/* Panels */
 +
.panel {
 +
    margin: 0 auto;
 +
    color: rgb(30,39,43);
 +
    font-family: 'Open Sans', sans-serif;
 +
}
 +
.panel a {
 +
display: inline-block;
 +
    color: rgb(46,43,52);
 +
    text-decoration:none;
 +
}
  
 +
/* Subpanels */
 +
.narrowimg {/* Subpanels background*/
 +
    /*position:absolute;*/
 +
    z-index:2;
 +
    opacity:0.3;
 +
    filter: alpha(opacity=30);
 +
}
 +
.titlebox {/* Subpanels Title*/
 +
    z-index:1;
 +
    position:relative;
 +
    bottom: 200px;
 +
    background:transparent;
 +
}
  
 +
.subpanel2 { /* Projects */
 +
    float: left;
 +
    width:250px;
 +
    height:250px;
 +
    font-size:20px;
 +
    text-align:center;
 +
    margin-top:5px;
 +
    margin-bottom:5px;
 +
    margin-right:5px;
 +
    margin-left:5px;
 +
    border-radius:7px;
 +
    overflow:hidden;
 +
}
 +
.subpanel2:hover{
 +
    font-weight:bold;
 +
}
 +
.subpanel2:hover .narrowimg {
 +
    opacity:0.8;
 +
    filter: alpha(opacity=80);
 +
}
 +
/* pages */
 +
.subpanel4 { /* divide page in 3 */
 +
    float:left;
 +
    width:364px;
 +
    height:492px;
 +
    font-size:22px;
 +
    margin-top:0;
 +
    margin-right:10px;
 +
}
 +
.subpanel6 { /* Pages */
 +
    height:240.5px;
 +
    margin:0;
 +
    margin-bottom:11px;
 +
    border-radius:7px;
 +
    overflow:hidden;
 +
    background:rgb(255,255,255);
 +
    color:Black;
 +
    text-align:center;
 +
}
 +
.subpanel6:hover{
 +
    font-weight:bold;
 +
}
 +
.subpanel6:hover .narrowimg {
 +
    opacity:0.8;
 +
    filter: alpha(opacity=80);
 +
}
  
  
  
−
<div class="column half_size">
+
/* Medal BOXES */
−
<div class="highlight">
+
.medal_boxes {
−
<h5>Note</h5>
+
margin: 0 auto;
−
<p>Note that parts must be documented on the <a href="http://parts.igem.org/Main_Page"> Registry</a>. This page serves to <i>showcase</i> the parts you have made. Future teams and other users and are much more likely to find parts by looking in the Registry than by looking at your team wiki.</p>
+
display : inline-block;
−
</div>
+
}
−
</div>
+
.medal_box_left {
 +
    float:left;
 +
    width:300px;
 +
    height: 430px; 
 +
    background-color: #CCCC99;
 +
    margin-left:15px;
 +
    margin-right:15px;
 +
    margin-top:15px;
 +
    border-radius: 25px;
 +
}
 +
.medal_box_middle {
 +
    float:left;
 +
    width:300px;
 +
    height: 430px; 
 +
    background-color: #E4D9D9;
 +
    margin-left:15px;
 +
    margin-right:15px;
 +
    margin-top:15px;
 +
    border-radius: 25px;
 +
}
 +
.medal_box_right {
 +
    float:left;
 +
    width:300px;
 +
    height: 430px;     
 +
    background-color: #FFED6F;
 +
    margin-left:15px;
 +
    margin-right:15px;
 +
    margin-top:15px;
 +
    text-align:justify;
 +
    border-radius: 25px;
 +
}
 +
.text {
 +
    padding-top: 10px;
 +
    padding-left: 25px;
 +
    padding-right: 25px;
 +
    text-align:justify;
 +
}
  
  
 +
/* Cool checkmarks*/
  
 +
ul li {margin-bottom: 12px;}
 +
.checkmark li {list-style:none}
 +
.checkmark li:before {
 +
content:"\2714";
 +
font-size:25px;
 +
vertical-align:top;
 +
margin-left: -20px;
 +
}
 +
a{text-decoration: underline;}
  
−
<div class="column half_size">
+
</style>
  
−
<h5>Adding parts to the registry</h5>
 
−
<p>You can add parts to the Registry at our <a href="http://parts.igem.org/Add_a_Part_to_the_Registry">Add a Part to the Registry</a> link.</p>
 
−
<p>We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better you will remember all the details about your parts. Remember, you don't need to send us the DNA sample before you create an entry for a part on the Registry. (However, you <b>do</b> need to send us the DNA sample before the Jamboree. If you don't send us a DNA sample of a part, that part will not be eligible for awards and medal criteria.)</p>
 
−
</div>
 
  
 +
<head></head>
  
  
 +
<body>
  
 +
<div id=topheader></div>
  
−
<div class="column half_size">
+
<div id=subheader>
 +
<div id=definition>
 +
<div style="margin-top:20px; margin-bottom:20px"></div>
  
−
<h5>What information do I need to start putting my parts on the Registry?</h5>
 
−
<p>The information needed to initially create a part on the Registry is:</p>
 
−
<ul>
 
−
<li>Part Name</li>
 
−
<li>Part type</li>
 
−
<li>Creator</li>
 
−
<li>Sequence</li>
 
−
<li>Short Description (60 characters on what the DNA does)</li>
 
−
<li>Long Description (Longer description of what the DNA does)</li>
 
−
<li>Design considerations</li>
 
−
</ul>
 
  
−
<p>
+
<h2>Medal Requirements</h2>
−
We encourage you to put up <em>much more</em> information as you gather it over the summer. If you have images, plots, characterization data and other information, please also put it up on the part page. </p>
+
  
 +
<div class=medal_boxes>
 +
  <div style="display: inline-block">
 +
  <div class=medal_box_left>
 +
    <div class=text>
 +
    <h3 style="text-align:center">Bronze Medal</h3>
 +
        <ul class="checkmark" style="">
 +
          <li>We registered our team, and had a great summer! :)</li>
 +
          <li>We have met all <a href="https://2016.igem.org/Requirements">deliverables</a></li>
 +
          <li>The attributions of every team member are available <a href="https://2016.igem.org/Team:Paris_Bettencourt/Attributions">here</a></li>
 +
  <li>We have created, submitted and documented a dozen BioBricks. One of them is <a href="http://parts.igem.org/Part:BBa_K2043002">BBa_K2043002</a> which represents our contribution for the bronze medal.</li>
 +
        </ul>
 +
    </div>
 +
  </div>
 
</div>
 
</div>
  
 +
  <div style="display: inline-block">
 +
  <div class=medal_box_middle>
 +
    <div class=text>
 +
    <h3 style="text-align:center">Silver Medal</h3>
 +
        <ul class="checkmark" style="">
 +
          <li><a href="http://parts.igem.org/Part:BBa_K2043004">BBa_K2043004</a> is a xylE gene from <i>Pseudomonas putida</i> codon optimized for expression in <i>E. coli</i>; a new and well documented standard biological part. Our contribution for the silver medal requirements.</li>
 +
          <li>Paris Bettencourt iGEM team has made many many friends over the summer. Our colaborations are listed <a href="https://2016.igem.org/Team:Paris_Bettencourt/Collaborations">here</a>.</li>
 +
          <li>Our project tackled a serious issue of perchlorethylene (PERC) poisoning in the dry-cleaning facilities. On this <a href="https://2016.igem.org/Team:Paris_Bettencourt/HP/Silver">link</a> you can read more about this problem: how we identified, investigated and addressed it.</li>
 +
        </ul>
 +
    </div>
 +
  </div>
 +
</div>
 +
 
 +
  <div style="display: inline-block">
 +
  <div class=medal_box_right>
 +
    <div class=text>
 +
    <h3 style="text-align:center">Gold Medal</h3>
 +
      <p>
 +
        <ul class="checkmark" style="">
 +
          <li>On this <a href="https://2016.igem.org/Team:Paris_Bettencourt/HP/Gold">link</a> we present how the PERC poisoning problem was integrated into our project. How we designed and addressed the issue through our project.</li>
 +
          <li>We have also improved the characterization of two previously existing BioBricks (BBa_K1321357 and BBa_K863001). For the gold medal requirements we are providing the <a href="https://2016.igem.org/Team:Paris_Bettencourt/Description">description</a> of the improvements made for <a href="http://parts.igem.org/Part:BBa_K1321357">BBa_K1321357</a>, a BioBrick designed by iGEM team of Imperial College London in 2014.</li>
 +
          <li>The <a href="https://2016.igem.org/Team:Paris_Bettencourt/Proof">proof of concept</a> shows that our project can be implemented ???? I don't know what to write here :(</li>
 +
        </ul>
 +
      </p>
 +
    </div>
 +
  </div>
 +
</div>
 +
</div>
  
−
<div class="column half_size">
+
<div style="margin-top:20px; margin-bottom:20px"></div>
  
−
<h5>Inspiration</h5>
+
<div class="panel" >
−
<p>We have a created a <a href="http://parts.igem.org/Well_Documented_Parts">collection of well documented parts</a> that can help you get started.</p>
+
  <a href="https://2016.igem.org/Team:Paris_Bettencourt/Results" title="Results">
 +
    <div id="pspanel" class="subpanel2" onmouseover="chgtrans(this)">
 +
      <img class="narrowimg" src="https://static.igem.org/mediawiki/2016/d/db/T--Paris_Bettencourt--results_icon.jpg" width="400px" height="300px"/>
 +
      <div class="titlebox">
 +
<center><img src="https://static.igem.org/mediawiki/2016/3/3e/T--Paris_Bettencourt--results_logo.png" style="height:90px;margin-top:-30px;"/></center>
 +
<div style="width:60%;margin-left:20%;margin-bottom:0px;"><hr></div>
 +
Results
 +
      </div>
 +
    </div>
 +
  </a>
  
−
<p> You can also take a look at how other teams have documented their parts in their wiki:</p>
+
  <a href="https://2016.igem.org/Team:Paris_Bettencourt/Medal_Requirements" title="Medal Requirements">
−
<ul>
+
    <div id="pspanel" class="subpanel2"  onmouseover="chgtrans(this)">
−
<li><a href="https://2014.igem.org/Team:MIT/Parts"> 2014 MIT </a></li>
+
      <img class="narrowimg" src="https://static.igem.org/mediawiki/2016/b/bb/T--Paris_Bettencourt--medal_icon.jpg" width="400px" height="300px"/>
−
<li><a href="https://2014.igem.org/Team:Heidelberg/Parts"> 2014 Heidelberg</a></li>
+
      <div class="titlebox">
−
<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Parts">2014 Tokyo Tech</a></li>
+
<center><img src="https://static.igem.org/mediawiki/2016/2/2c/T--Paris_Bettencourt--medal_logo.png" style="height:90px;margin-top:-30px;"/></center>
−
</ul>
+
<div style="width:60%;margin-left:20%;margin-bottom:0px;"><hr></div>
−
</div>
+
Medal Requirements
 +
      </div>
 +
    </div>
 +
  </a>
  
−
<div class="column full_size">
+
  <a href="https://2016.igem.org/Team:Paris_Bettencourt/Parts" title="Parts">
−
<h5>Part Table </h5>
+
    <div id="pspanel" class="subpanel2"  onmouseover="chgtrans(this)">
−
<div class="highlight">
+
      <img class="narrowimg" src="https://static.igem.org/mediawiki/2016/0/03/T--Paris_Bettencourt--parts_icon.jpg" width="400px" height="300px"/>
 +
      <div class="titlebox">
 +
<center><img src="https://static.igem.org/mediawiki/2016/3/3a/T--Paris_Bettencourt--biobrick_logo.png" style="height:90px;margin-top:-30px;"/></center>
 +
<div style="width:60%;margin-left:20%;margin-bottom:0px;"><hr></div>
 +
Parts
 +
      </div>
 +
    </div>
 +
  </a>
  
−
 
+
  <a href="https://2016.igem.org/Team:Paris_Bettencourt/Interlab_Study" title="Interlab Study">
−
</html>
+
    <div id="pspanel" class="subpanel2"  onmouseover="chgtrans(this)">
−
<groupparts>iGEM2016 Example</groupparts>
+
      <img class="narrowimg" src="https://static.igem.org/mediawiki/2016/2/2e/T--Paris_Bettencourt--interlab_icon.jpg" width="400px" height="300px"/>
−
<html>
+
      <div class="titlebox">
 +
<center><img src="https://static.igem.org/mediawiki/2016/8/85/T--Paris_Bettencourt--interlab_logo.png" style="height:90px;margin-top:-30px;"/></center>
 +
<div style="width:60%;margin-left:20%;margin-bottom:0px;"><hr></div>
 +
Interlab Study
 +
      </div>
 +
    </div>
 +
  </a>
 +
</div>
 
</div>
 
</div>
 
</div>
 
</div>
  
−
 
+
</body>
  
  
 
</html>
 
</html>
 +
{{Paris_Bettencourt/Footer2}}

Revision as of 18:43, 18 October 2016


Medal Requirements

Bronze Medal

  • We registered our team, and had a great summer! :)
  • We have met all deliverables
  • The attributions of every team member are available here
  • We have created, submitted and documented a dozen BioBricks. One of them is BBa_K2043002 which represents our contribution for the bronze medal.

Silver Medal

  • BBa_K2043004 is a xylE gene from Pseudomonas putida codon optimized for expression in E. coli; a new and well documented standard biological part. Our contribution for the silver medal requirements.
  • Paris Bettencourt iGEM team has made many many friends over the summer. Our colaborations are listed here.
  • Our project tackled a serious issue of perchlorethylene (PERC) poisoning in the dry-cleaning facilities. On this link you can read more about this problem: how we identified, investigated and addressed it.

Gold Medal

  • On this link we present how the PERC poisoning problem was integrated into our project. How we designed and addressed the issue through our project.
  • We have also improved the characterization of two previously existing BioBricks (BBa_K1321357 and BBa_K863001). For the gold medal requirements we are providing the description of the improvements made for BBa_K1321357, a BioBrick designed by iGEM team of Imperial College London in 2014.
  • The proof of concept shows that our project can be implemented ???? I don't know what to write here :(

Results
Medal Requirements
Parts
Interlab Study
Centre for Research and Interdisciplinarity (CRI)
Faculty of Medicine Cochin Port-Royal, South wing, 2nd floor
Paris Descartes University
24, rue du Faubourg Saint Jacques
75014 Paris, France
+33 1 44 41 25 22/25
igem2016parisbettencourt@gmail.com
2016.igem.org