Difference between revisions of "Team:UGent Belgium/Parts"

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{{Team:UGent_Belgium/customCSS}}
 
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{{Team:UGent_Belgium/menu}}
 
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<br><br>
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{{UGent_Belgium}}
 
{{UGent_Belgium}}
 
<html>
 
<html>
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<br>
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<div class="container">
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<h1>Parts</h1><br>
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<h2 id="basic"> Basic Parts </h2>
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<div style="min-height:100px;width:800px;">
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  <style>
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<div class="column full_size">
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    .status_cell { width:8px; }
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<p>Each team will make new parts during iGEM and will submit them to the Registry of Standard Biological Parts. The iGEM software provides an easy way to present the parts your team has created. The <code>&lt;groupparts&gt;</code> tag (see below) will generate a table with all of the parts that your team adds to your team sandbox.</p>
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    .c6 { width: 150px; white-space:normal; }
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<p>Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without needing to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.</p>
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  </style>
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  <table class=" pgrouptable tablesorter" style="width: 100%;" cellpadding="0" cellspacing="0">
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    <thead>
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      <tr><th style="width:8px"></th><th style="width:8px"></th><th style="width:8px"></th><th style="width: 87px;">Name</th><th style="width: 80px" colspan="">Type</th><th style="width: auto;" colspan="">Description</th><th style="width: 200px" colspan="">Designer</th><th style="width: 50px" colspan="">Length</th></tr>
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    </thead>
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    <tbody>
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      <tr>
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        <td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896000">BBa_K1896000</a></td><td>Protein_Domain</td><td>Monomeric streptavidin (mSA2)</td><td width="200px">Bob Van Hove, Maarten Van Brempt</td><td align="right">387</td>
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      </tr>
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      <tr>
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        <td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896001">BBa_K1896001</a></td><td>Coding</td><td>mGFPuv2</td><td width="200px">Bob Van Hove, Maarten Van Brempt</td><td align="right">717</td>
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      </tr>
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      <tr>
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        <td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896002">BBa_K1896002</a></td><td>Coding</td><td>inaZ (GG safe)</td><td width="200px">Bob Van Hove, Maarten Van Brempt</td><td align="right">3603</td>
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      </tr>
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  </tbody>
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  </table>
 
</div>
 
</div>
  
  
  
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  <h2 id="composite">Composite parts</h2>
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<div id="groupparts" style="min-height:100px;width:800px;">
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<div class="column half_size">
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  <style>
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<div class="highlight">
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    .status_cell { width:8px; }
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<h5>Note</h5>
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<p>Note that parts must be documented on the <a href="http://parts.igem.org/Main_Page"> Registry</a>. This page serves to <i>showcase</i> the parts you have made. Future teams and other users and are much more likely to find parts by looking in the Registry than by looking at your team wiki.</p>
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    .c4 { width: 80px; white-space:normal; }
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</div>
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    .c6 { width: 150px; white-space:normal; }
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    .c7 { width: 50px; white-space:normal; }
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  </style>
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  <table class=" pgrouptable tablesorter" style="width: 100%;" cellpadding="0" cellspacing="0">
 +
    <thead>
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      <tr><th style="width:8px"></th><th style="width:8px"></th><th style="width:8px"></th><th style="width: 100px;">Name</th><th style="width: 67px" colspan="">Type</th><th style="width: auto;" colspan="">Description</th><th style="width: 200px" colspan="">Designer</th><th style="width: 50px" colspan="">Length</th></tr>
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    </thead>
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    <tbody>
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    <tr>
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      <td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896010">BBa_K1896010</a></td><td>Generator</td><td>mGFPuv2 generator</td><td width="200px">Bob Van Hove, Maarten Van Brempt</td><td align="right">915</td>
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    </tr>
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    <tr>
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      <td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896011">BBa_K1896011</a></td><td>Generator</td><td>inaZ (INP) generator</td><td width="200px">Bob Van Hove, Maarten Van Brempt</td><td align="right">3801</td>
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    </tr>
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    <tr>
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      <td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896012">BBa_K1896012</a> &dagger;</td><td>Generator</td><td>INP_NC-streptavidin generator</td><td width="200px">Bob Van Hove, Maarten Van Brempt</td><td align="right">1542</td>
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    </tr>
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    <tr>
 +
      <td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896013">BBa_K1896013</a></td><td>Generator</td><td>INP_NC-mSA2 generator</td><td width="200px">Bob Van Hove, Maarten Van Brempt</td><td align="right">1518</td>
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    </tr>
 +
    <tr>
 +
      <td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896014">BBa_K1896014</a> &dagger;</td><td>Generator</td><td>mGFPuv2-streptavidin generator</td><td width="200px">Bob Van Hove, Maarten Van Brempt</td><td align="right">1332</td>
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    </tr>
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    <tr>
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      <td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896015">BBa_K1896015</a></td><td>Generator</td><td>mGFPuv2-mSA2 generator</td><td width="200px">Bob Van Hove, Maarten Van Brempt</td><td align="right">1308</td>
 +
    </tr>
 +
    <tr>
 +
      <td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896016">BBa_K1896016</a></td><td>Generator</td><td>INP_RC-mGFPuv2 generator</td><td width="200px">Bob Van Hove, Maarten Van Brempt</td><td align="right">4023</td>
 +
    </tr>
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    <tr>
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      <td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896017">BBa_K1896017</a>  &dagger;</td><td>Generator</td><td>INP_RC-streptavidin generator</td><td width="200px">Bob Van Hove, Maarten Van Brempt</td><td align="right">3714</td>
 +
    </tr>
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    <tr>
 +
      <td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896018">BBa_K1896018</a></td><td>Generator</td><td>INP_RC-mSA2 generator</td><td width="200px">Bob Van Hove, Maarten Van Brempt</td><td align="right">3690</td>
 +
    </tr>
 +
    <tr>
 +
      <td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896019">BBa_K1896019</a></td><td>DNA</td><td>pXS-GG cloning construct</td><td width="200px">Bob Van Hove, Maarten Van Brempt</td><td align="right">220</td>
 +
    </tr>
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    <tr>
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      <td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896020">BBa_K1896020</a></td><td>DNA</td><td>pXW-GG cloning construct</td><td width="200px">Bob Van Hove, Maarten Van Brempt</td><td align="right">220</td>
 +
    </tr>
 +
  </tbody>
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  </table>
 
</div>
 
</div>
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<p>&dagger;: Parts encoding tetrameric streptavidin fusion proteins were found to cause growth defects and be genetically unstable.</p>
  
  
  
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  <h2 id="fusion">Intermediate Parts</h2>
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  <p>The following parts are virtual parts that have been created for the purpose of entering protein fusions as composite parts into the Parts Registry. Make sure to check "scarless assembly" when combining these parts.</p>
  
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<div class="column half_size">
 
  
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<h5>Adding parts to the registry</h5>
 
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<p>You can add parts to the Registry at our <a href="http://parts.igem.org/Add_a_Part_to_the_Registry">Add a Part to the Registry</a> link.</p>
 
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<p>We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better you will remember all the details about your parts. Remember, you don't need to send us the DNA sample before you create an entry for a part on the Registry. (However, you <b>do</b> need to send us the DNA sample before the Jamboree. If you don't send us a DNA sample of a part, that part will not be eligible for awards and medal criteria.)</p>
 
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</div>
 
  
  
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  <ul>
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<li> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896004" target="_blank"> BBa_K1896004 </a>- linker-streptavidin-His (tetrameric) </li>
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<li> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896005" target="_blank"> BBa_K1896005 </a>- mSA2-His </li>
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<div class="column half_size">
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<li> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896006" target="_blank"> BBa_K1896006 </a>- mGFPuv2 (N-part) <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896001" target="_blank">BBa_K1896001</a> with the stop codon removed.</li>
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<li> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896007" target="_blank"> BBa_K1896007 </a>- mGFPuv2 (C-part) <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896001" target="_blank">BBa_K1896001</a> with the start codon replaced by a protein linker.</li>
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<h5>What information do I need to start putting my parts on the Registry?</h5>
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<li> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1896008" target="_blank"> BBa_K1896008 </a>- INP_RC </li>
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<p>The information needed to initially create a part on the Registry is:</p>
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<ul>
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<li>Part Name</li>
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<li>Part type</li>
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<li>Creator</li>
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<li>Sequence</li>
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<li>Short Description (60 characters on what the DNA does)</li>
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<li>Long Description (Longer description of what the DNA does)</li>
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<li>Design considerations</li>
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</ul>
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<p>
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We encourage you to put up <em>much more</em> information as you gather it over the summer. If you have images, plots, characterization data and other information, please also put it up on the part page. </p>
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<h5>Inspiration</h5>
 
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<p>We have a created  a <a href="http://parts.igem.org/Well_Documented_Parts">collection of well documented parts</a> that can help you get started.</p>
 
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<p> You can also take a look at how other teams have documented their parts in their wiki:</p>
 
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<ul>
 
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<li><a href="https://2014.igem.org/Team:MIT/Parts"> 2014 MIT </a></li>
 
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<li><a href="https://2014.igem.org/Team:Heidelberg/Parts"> 2014 Heidelberg</a></li>
 
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<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Parts">2014 Tokyo Tech</a></li>
 
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</ul>
 
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</div>
 
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<div class="column full_size">
 
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<h5>Part Table </h5>
 
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<div class="highlight">
 
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<groupparts>iGEM2016 Example</groupparts>
 
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{{Team:UGent_Belgium/footer}}
 
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<script type="text/javascript" src="https://2016.igem.org/Template:Team:UGent_Belgium/JS?
 
<script type="text/javascript" src="https://2016.igem.org/Template:Team:UGent_Belgium/JS?

Latest revision as of 19:02, 19 October 2016

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Parts


Basic Parts

NameTypeDescriptionDesignerLength
   BBa_K1896000Protein_DomainMonomeric streptavidin (mSA2)Bob Van Hove, Maarten Van Brempt387
   BBa_K1896001CodingmGFPuv2Bob Van Hove, Maarten Van Brempt717
   BBa_K1896002CodinginaZ (GG safe)Bob Van Hove, Maarten Van Brempt3603

Composite parts

NameTypeDescriptionDesignerLength
   BBa_K1896010GeneratormGFPuv2 generatorBob Van Hove, Maarten Van Brempt915
   BBa_K1896011GeneratorinaZ (INP) generatorBob Van Hove, Maarten Van Brempt3801
   BBa_K1896012 †GeneratorINP_NC-streptavidin generatorBob Van Hove, Maarten Van Brempt1542
   BBa_K1896013GeneratorINP_NC-mSA2 generatorBob Van Hove, Maarten Van Brempt1518
   BBa_K1896014 †GeneratormGFPuv2-streptavidin generatorBob Van Hove, Maarten Van Brempt1332
   BBa_K1896015GeneratormGFPuv2-mSA2 generatorBob Van Hove, Maarten Van Brempt1308
   BBa_K1896016GeneratorINP_RC-mGFPuv2 generatorBob Van Hove, Maarten Van Brempt4023
   BBa_K1896017 †GeneratorINP_RC-streptavidin generatorBob Van Hove, Maarten Van Brempt3714
   BBa_K1896018GeneratorINP_RC-mSA2 generatorBob Van Hove, Maarten Van Brempt3690
   BBa_K1896019DNApXS-GG cloning constructBob Van Hove, Maarten Van Brempt220
   BBa_K1896020DNApXW-GG cloning constructBob Van Hove, Maarten Van Brempt220

†: Parts encoding tetrameric streptavidin fusion proteins were found to cause growth defects and be genetically unstable.

Intermediate Parts

The following parts are virtual parts that have been created for the purpose of entering protein fusions as composite parts into the Parts Registry. Make sure to check "scarless assembly" when combining these parts.