Difference between revisions of "Team:Aix-Marseille/Design"

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==General objective==
 
==General objective==
  
Nowadays, platinum ressources are an issue because of their planned disappearance toward 2064. Moreover, any alternative has been found so far to counteract the disparition of this metal compared to its central importance in many industries (electronic, automobile, medecine..) .
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Nowadays, platinum ressources are an issue because of their planned disappearance toward 2064. Moreover, any alternative has been found so far to counteract the disparition of this metal compared to its central importance in many industries (electronic, automobile, medical..) .
  
 
Facing this problem, our goal here is to make a sustainable process, extracting platinum from an other source (road, sludge) than mines ressources, less pollutant, less expensive..
 
Facing this problem, our goal here is to make a sustainable process, extracting platinum from an other source (road, sludge) than mines ressources, less pollutant, less expensive..
  
Accumulation of the metal on the road side has been frequently shown since the beggining of the 21th. Futhermore, alternatives methods to recycle precious metal are investigated. Here, we use the adsorption potentiel of bacterial natural componants (specifically flagellum and biopeptides) to make a process ables to extract or concentrate the platinum available on different compartiments like soil, plants, sewege sludge...  
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Accumulation of the metal on the road side has been frequently shown since the beginning of the 21st century. Futhermore, alternatives methods to recycle precious metal are investigated. Here, we use the adsorption potentiel of bacterial natural componants (specifically flagellum and biopeptides) to make a process able to extract or concentrate the platinum available on different compartiments like soil, plants, sewege sludge...  
  
[[File:T--Aix-Marseille--maquette2.jpeg|770px|center|thumb|Maquette of our process in the futur : Process has been imagined in a circular platinum economy based on the sludge treatment. Platinum found on the <u>water retention bassin</u> is recovered and incinerated. Though, valuable ashes obtained would be treated by both steps we made : the first one is a siderophore treatment making a first concentration of the platinum and other metals, the second one is a flagellin treatment allowing to make industrialisable platinum. In consequence, treated sludge are depolluted from metal and can be spreaded on the crops making an additional valorization. The recycled platinum cans be used in automobile industry for example and be an element of new automobiles. And steps finally come a full circle. ]]
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[[File:T--Aix-Marseille--maquette2.jpeg|770px|center|thumb|Maquette of our process in the futur : Process has been imagined in a circular platinum economy based on the sludge treatment. Platinum found on the water retention basin is recovered and incinerated. Though, valuable ashes obtained would be treated by both steps we made : the first one is a siderophore treatment making a first concentration of the platinum and other metals, the second one is a flagellin treatment allowing to make industrialisable platinum. In consequence, treated sludge are depolluted from metal and can be spreaded on the crops making an additional valorization. The recycled platinum can be used in automobile industry for example and be an element of new automobiles. And then the platinum come back to it first form and can be recycle and the cycle begin, the cycle of platinum!. ]]
  
 
==Source of platinum==
 
==Source of platinum==
Since a law from 1993, platinum is largely used in catalytic converter to avoid toxic gaz release <ref>J. de Aberasturi, et al., Minerals Engineering 24, 505 (2011)</ref>. . During the automobile fonctionnement, the precious metal is rejected and deposed on the road under a ionic form <ref>P.S Hooda & al. 2007, https://www.ncbi.nlm.nih.gov/pubmed/17604084</ref><ref>Liliane Michel Legret & al. http://link.springer.com/article/10.1007/s11368-012-0491-3.</ref> Platinum leaching makes an accumulation of this metal on the road side. By default, it has been prooved that plants are potentiel bioaccumulator of platinum, which is found concentrated on the roots, leaves.. Otherwise, the metal is also carried on the sewage sludge and is actually an issue regarding the recycling potential of these sludge.
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Since a law from 1993, platinum is largely used in catalytic converter to avoid toxic gaz release <ref>J. de Aberasturi, et al., Minerals Engineering 24, 505 (2011)</ref>. . During the automobile functioning, the precious metal is rejected and deposed on the road under a ionic form <ref>P.S Hooda & al. 2007, https://www.ncbi.nlm.nih.gov/pubmed/17604084</ref><ref>Liliane Michel Legret & al. http://link.springer.com/article/10.1007/s11368-012-0491-3.</ref> Platinum leaching leads to an accumulation of this metal on the road side. By default, it has been prooved that plants are potential bioaccumulator of platinum, which is found accumulated on the roots, leaves or into them. Otherwise, the metal is also carried on the sewage sludge and is actually an issue regarding the recycling potential of these sludge.
  
 
[[File:T--Aix-Marseille--platine.jpeg|500px|center|thumb|Platinum sources]]
 
[[File:T--Aix-Marseille--platine.jpeg|500px|center|thumb|Platinum sources]]
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==Mobilisation by a siderophore==
 
==Mobilisation by a siderophore==
  
In the previous article <ref> Improving recoveries of platinum and palladium from oxidized Platinum-group element ores of the Great Dyke, Zimbabwe, using the biogenic siderophore Desferrioxamine B, Dennis Kraemer & al. </ref>, authors made bioleaching with synthetised siderophores. By this way, they extracted approximately 80% of the total platinum found in the ore. But we were looking for a synthetic biological approach.  
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In the previous article <ref> Improving recoveries of platinum and palladium from oxidized Platinum-group element ores of the Great Dyke, Zimbabwe, using the biogenic siderophore Desferrioxamine B, Dennis Kraemer & al. </ref>, authors made bioleaching with chemically synthetised siderophores. By this way, they extracted approximately 80% of the total platinum found in the ore. But we were looking for a synthetic biological approach. A biological approach can lead to an easier and cheaper way to extract minerals.
  
 
===Pathway of the desferrioxamine B biosynthesis===
 
===Pathway of the desferrioxamine B biosynthesis===
 
[[File:T--Aix-Marseille--desABCD.jpeg|600px|center|thumb|Desferrioxamine B pathway]]  
 
[[File:T--Aix-Marseille--desABCD.jpeg|600px|center|thumb|Desferrioxamine B pathway]]  
  
Previous work showed that siderophore which are molecule secreted by bacteria to catch iron are able to catch other metals by default. Specifically, many articles showed a high affinity of Desferrioxamine B ( produce by ''Streptomyces coelicolor'') for tetravalent metal ions and more specifically platinum. These results encouraged us to make a biobrick coding the sequence corresponding to the 4 enzymes involved on the metabolic pathway of Desferrioxamine B. <i>E. coli</i> was used to produce this biobrick. Produce a gram positive bacteria pathway in a gram negative bacteria is restrictive <ref> Wandersman & Delepaire https://www.ncbi.nlm.nih.gov/pubmed/15487950  </ref> , considering the risk of toxicity for the conductress bacteria. To counter this potential issue, we regulate trasnscription using the control of an inductible promotor (pBAD/araC).
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Previous work showed that siderophores which are molecule secreted by bacteria to catch iron are able to catch other metals by default. Specifically, many articles showed a high affinity of Desferrioxamine B ( produce by ''Streptomyces coelicolor'') for tetravalent metal ions and more specifically platinum. These results encouraged us to make a biobrick coding the sequence corresponding to the 4 enzymes involved on the metabolic pathway of Desferrioxamine B. <i>E. coli</i> was used to produce this biobrick. Produce a gram positive bacteria pathway in a gram negative bacteria is restrictive <ref> Wandersman & Delepaire https://www.ncbi.nlm.nih.gov/pubmed/15487950  </ref> , considering the risk of toxicity for the conductress bacteria. To counter this potential issue, we regulate transcription using the arabinose inductible promoter, pBAD/araC
  
It has to be noted that the siderophore here is specific for platinum but the same cloning could be performed with siderophore specific for others metals, thus the potential of our process to be applied in the recovery of others metals.
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It has to be noted that the siderophore here is specific for platinum but the same cloning could be performed with siderophores specific for others metals, thus our process presents a great potential as it can be applied to others metals thanks to synthetic biology and its modularity.
  
 
===Our strategy===
 
===Our strategy===
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[[File:T--Aix-Marseille--siderophore_pathway.jpeg|200px|right|thumb|Siderophore production strategy]]  
 
[[File:T--Aix-Marseille--siderophore_pathway.jpeg|200px|right|thumb|Siderophore production strategy]]  
 
   
 
   
1. Transformation of E.Coli with an inductible plasmide holding the ''des'' cluster
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1. Transformation of E.Coli with an inductible plasmide holding the ''des'' cluster.
  
2. Induction and production of the desferrioxamine B
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2. Induction and production of the desferrioxamine B.
  
  
  
Then, the produced siderophore would be purified and transfered in the recuperation solution containing the platinum and other metals. Therefore, those metals must be recruit by our purified siderophores. Though those siderophores would be import using a sowing of ''Streptomyces coelicolor''. Then simple centrifugation and combustion will concentrate the solution in metal a first time.
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Then, the produced siderophore would be purified and transfered in the recuperation solution containing the platinum and other metals. Therefore, those metals must be recruited by our purified siderophores. Though those siderophores would be import using a sowing of ''Streptomyces coelicolor''. Then simple centrifugation and combustion will concentrate the solution in metal a first time.
 
[[File:T--Aix-Marseille--streptomyces.jpeg|300px|center|thumb|Importation of the siderophore complexed with the platinum in Streptomyces]]
 
[[File:T--Aix-Marseille--streptomyces.jpeg|300px|center|thumb|Importation of the siderophore complexed with the platinum in Streptomyces]]
  
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[[File:Biosfhsdh.png|200px|left|thumb|Adsorption of the platinum on the flagellum, Deplenche & al. 2008]]
 
[[File:Biosfhsdh.png|200px|left|thumb|Adsorption of the platinum on the flagellum, Deplenche & al. 2008]]
  
It was shown that proteins are able to bind platinium and especially bacterial flagellums which are naturally a high platinum adsober <ref>Capeness & al. 2015, http://eprints.nottingham.ac.uk/27979/1/Michael%20Capeness%20-%20Thesis%20-%20PDF.pdf</ref><ref>Deplanche & al., 2007 http://onlinelibrary.wiley.com/doi/10.1002/bit.21688/abstract. </ref> Furthermore, many peptides were generated based on sequences selected by phage display in order to enhance metal ions adsorption including gold, silver platinum and a plenty of other metals, hence the potential of our process to be performed with other metals.<ref>Uratu Ozgur Safak Seker & al., 2011, http://www.mdpi.com/1420-3049/16/2/1426.</ref>
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It was shown that proteins are able to bind platinium and especially bacterial flagellums which are naturally a high platinum adsorber <ref>Capeness & al. 2015, http://eprints.nottingham.ac.uk/27979/1/Michael%20Capeness%20-%20Thesis%20-%20PDF.pdf</ref><ref>Deplanche & al., 2007 http://onlinelibrary.wiley.com/doi/10.1002/bit.21688/abstract. </ref> Furthermore, many peptides were generated based on sequences selected by phage display in order to enhance metal ions adsorption including gold, silver, platinum and a plenty of other metals. This enhances the potential of our process which can be performed with other metals.<ref>Uratu Ozgur Safak Seker & al., 2011, http://www.mdpi.com/1420-3049/16/2/1426.</ref>
  
 
=== Our strategy ===
 
=== Our strategy ===
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This step aims to :  
 
This step aims to :  
 
* adsorb ions on bacterial flagella protein
 
* adsorb ions on bacterial flagella protein
* the ambient reducer power reduces ions into oxidized nano particles
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* reduce ions into reduced nanoparticles by the ambient reducer power
All together, these findings incite us to use these natural properties to build a biobricks which is a high affinity binder of platinum based on <i>E. coli</i> and <i>Desulfovibrio vulgaris</i> flagellum and synthetic peptides sequences. To this end, we analyze the flagella sequence and structural proprieties of the external part of the flagella. Then, on the part of the flagellin faced to the external medium, an insertion restriction site will be inserted. Then specific precious metal peptides would be added using this insertion site to increase the level of adsorption specificity and yield. In this way, peptide would be faced to the external medium and able to bind metallic ions. To obtain a high transcription level of this sequence, we put transcription control under a strong promotor enabling a high flagellin production.
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All together, these findings incite us to use these natural properties to build a biobrick which is a high affinity binder of platinum based on <i>E. coli</i> and <i>Desulfovibrio vulgaris</i> flagellum and synthetic peptides. To this end, we analyze the flagella sequences and structural properties of the external part of the flagella. Then, on the part of the flagellin facing the external medium, an insertion restriction site will be inserted. Then specific precious metal peptides would be added using this insertion site to increase the level of adsorption specificity and yield. In this way, peptide would be facing the external medium and being able to bind metallic ions. To obtain a high transcription level of this sequence, we put transcription control under a strong promoter enabling a high flagellin production.
 
[[File:T--Aix-Marseille--flagel_captation.jpeg|500px|center|thumb|Adsorption of the platinum on the flagellin]]
 
[[File:T--Aix-Marseille--flagel_captation.jpeg|500px|center|thumb|Adsorption of the platinum on the flagellin]]
Next, the flagellin produced will be added to the first concentrated platinum solution. Flagellin containing specific peptides will bind the free or available ions of the medium and reduce them into oxydised nanoparticules usable in industry. A simple centrifugation of the flagellin binding to the platinum allow to concentrate the metal a second time.
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Next, the flagellin produced will be added to the first concentrated platinum solution. Flagellin containing specific peptides will bind the free or available ions in the medium and reduce them into reduced nanoparticules usable in industry. A simple centrifugation of the flagellin binding the platinum allows to concentrate the metal a second time.
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<references/>
  
 
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Latest revision as of 22:31, 19 October 2016