Difference between revisions of "Team:Valencia UPV/Software"
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| − | <section><div class="container-fluid"><div class="row"><div class="col-md-2 col-sm-3"><div class="side-nav margin-bottom-60 margin-top-30"><div class="side-nav-head"><button class="fa fa-bars"></button><h4>Index</h4></div><ul class="list-group list-group-bordered list-group-noicon uppercase"><li class="list-group-item"><a href=" | + | <section><div class="container-fluid"><div class="row"><div class="col-md-2 col-sm-3"><div class="side-nav margin-bottom-60 margin-top-30"><div class="side-nav-head"><button class="fa fa-bars"></button><h4>Index</h4></div><ul class="list-group list-group-bordered list-group-noicon uppercase"><li class="list-group-item"><a href="https://2016.igem.org/Team:Valencia_UPV/Software#Database_id"><span class="size-11 text-muted pull-right"></span>Database</a></li></ul></div></div><div class="col-md-10 col-sm-9"><div class="blog-post-item" id="Database_id"><h3>Database</h3><p><br></p><div class="table-responsive" style="width:55%;overflow:inherit"><table class="table table-bordered table-striped"><tr><th>th Common name</th><th>Species</th><th>Phenotypic trait</th><th>Gene Name</th><th>NCBI CDS Accession number</th><th>Protein</th></tr><tr><td>Apple</td><td>Malus domestica</td><td>delayed ripening</td><td>MdACS3</td><td>AB243060</td><td>1-aminocyclopropane-1-carboxylate synthase</td></tr><tr><td>Tomato</td><td>Solanum lycopersicum</td><td>delayed ripening</td><td>Solanum lycopersicum 1-aminocyclopropane-1-carboxylate synthase (ACS6), mRNA</td><td>NM_001247235.2</td><td>1-aminocyclopropane-1-carboxylate synthase</td></tr><tr><td>Strawberry</td><td>Fragaria × ananassa</td><td>Flavonoid biosynthesis</td><td>Fragaria chiloensis transcription factor (MYB1) mRNA, complete cds</td><td> GQ867222.1</td><td>A R2R3 MYB transcription factor</td></tr><tr><td>Tomato </td><td>Solanum lycopersicum </td><td>Increase of carotenoid and flavonoid levels</td><td>Solanum lycopersicum deetiolated1 homolog (Det1), mRNA</td><td> NM_001247219.2</td><td>light-mediated development protein DET1</td></tr><tr><td>Orange tree</td><td>Citrus sinensis</td><td>induced flowering</td><td>Citrus sinensis terminal flower (TFL), mRNA</td><td>NM_001288919.1</td><td>terminal flower (TFL)</td></tr><tr><td>Maize</td><td>Zea mays</td><td>semi-dwarf; more grain yield</td><td>Zea mays (LOC107521947), mRNA</td><td>NM_001321686.1</td><td>GA3 oxidase</td></tr><tr><td>Rice</td><td>Oryza sativa</td><td>Resitance to Magnaporthe oryzae, the causal fungus of rice blast disease</td><td>OsERF922</td><td>AP2/ERF type transcription factor</td></tr><tr><td>Rice</td><td>Oryza sativa</td><td>Tolerance to salt stress</td><td>OsERF922</td><td>AP2/ERF type transcription factor</td></tr><tr><td>Rice</td><td>Oryza sativa</td><td>Drought Tolerance</td><td>RACK1</td><td>RACK1</td></tr><tr><td>Rice</td><td>Oryza sativa</td><td>Drought Tolerance</td><td>PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase SINAT5 (LOC4344172), mRNA.</td><td> XM_015789296</td><td>E3 ubiquitin-protein ligase SINAT5</td></tr><tr><td>coffee</td><td>Coffea arabica</td><td>decaffeinated plants</td><td>Coffea arabica CaMXMT1 mRNA for 7-methylxanthine N-methyltransferase, complete cds.</td><td>AB048794</td><td>RecName: Full=Monomethylxanthine methyltransferase 1; Short=CaMXMT1; AltName: Full=Theobromine synthase 1</td></tr><tr><td>cotton</td><td>Gossypium hirsutum</td><td> increased stearic acid content</td><td>G.hinsutum mRNA for stearoyl-acyl-carrier protein desaturase</td><td> X95988</td><td>delta 9 stearoyl-(acyl-carrier protein) desaturase (Gossypium hirsutum)</td></tr><tr><td>cotton</td><td>Gossypium hirsutum</td><td>increased oleic acid content</td><td>Gossypium hirsutum delta(12)-fatty-acid desaturase FAD2-like (LOC107934594), mRNA.</td><td>NM_001327381</td><td>delta(12)-fatty-acid desaturase FAD2-like (Gossypium hirsutum)</td></tr><tr><td>corn</td><td>Zea mays</td><td>higher levels of amylose</td><td>Zea mays amylose extender 1 (ae1), mRNA.</td><td>NM_001111846</td><td>1,4-α-glucan-branching enzyme 2, chloroplastic/amyloplastic precursor (Zea mays)</td></tr><tr><td>onion </td><td>Allium roylei</td><td>reduced levels of tear-inducing lachrymatory factor</td><td>Allium roylei lachrymatory factor synthase (LFS) gene, partial cds.</td><td> HQ738919</td><td> lachrymatory factor synthase, partial (Allium roylei)</td></tr><tr><td>tomato </td><td>Solanum lycopersicum</td><td>Parthenocarpic</td><td>Solanum lycopersicum chalcone synthase (CHS2) mRNA, complete cds.</td><td> HQ008773</td><td>chalcone synthase (Solanum lycopersicum)</td></tr><tr><td></td></tr></table></div><p></p></div></div></div></section> |
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Revision as of 23:10, 19 October 2016
Data Processing Software
Index
Database
| th Common name | Species | Phenotypic trait | Gene Name | NCBI CDS Accession number | Protein |
|---|---|---|---|---|---|
| Apple | Malus domestica | delayed ripening | MdACS3 | AB243060 | 1-aminocyclopropane-1-carboxylate synthase |
| Tomato | Solanum lycopersicum | delayed ripening | Solanum lycopersicum 1-aminocyclopropane-1-carboxylate synthase (ACS6), mRNA | NM_001247235.2 | 1-aminocyclopropane-1-carboxylate synthase |
| Strawberry | Fragaria × ananassa | Flavonoid biosynthesis | Fragaria chiloensis transcription factor (MYB1) mRNA, complete cds | GQ867222.1 | A R2R3 MYB transcription factor |
| Tomato | Solanum lycopersicum | Increase of carotenoid and flavonoid levels | Solanum lycopersicum deetiolated1 homolog (Det1), mRNA | NM_001247219.2 | light-mediated development protein DET1 |
| Orange tree | Citrus sinensis | induced flowering | Citrus sinensis terminal flower (TFL), mRNA | NM_001288919.1 | terminal flower (TFL) |
| Maize | Zea mays | semi-dwarf; more grain yield | Zea mays (LOC107521947), mRNA | NM_001321686.1 | GA3 oxidase |
| Rice | Oryza sativa | Resitance to Magnaporthe oryzae, the causal fungus of rice blast disease | OsERF922 | AP2/ERF type transcription factor | |
| Rice | Oryza sativa | Tolerance to salt stress | OsERF922 | AP2/ERF type transcription factor | |
| Rice | Oryza sativa | Drought Tolerance | RACK1 | RACK1 | |
| Rice | Oryza sativa | Drought Tolerance | PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase SINAT5 (LOC4344172), mRNA. | XM_015789296 | E3 ubiquitin-protein ligase SINAT5 |
| coffee | Coffea arabica | decaffeinated plants | Coffea arabica CaMXMT1 mRNA for 7-methylxanthine N-methyltransferase, complete cds. | AB048794 | RecName: Full=Monomethylxanthine methyltransferase 1; Short=CaMXMT1; AltName: Full=Theobromine synthase 1 |
| cotton | Gossypium hirsutum | increased stearic acid content | G.hinsutum mRNA for stearoyl-acyl-carrier protein desaturase | X95988 | delta 9 stearoyl-(acyl-carrier protein) desaturase (Gossypium hirsutum) |
| cotton | Gossypium hirsutum | increased oleic acid content | Gossypium hirsutum delta(12)-fatty-acid desaturase FAD2-like (LOC107934594), mRNA. | NM_001327381 | delta(12)-fatty-acid desaturase FAD2-like (Gossypium hirsutum) |
| corn | Zea mays | higher levels of amylose | Zea mays amylose extender 1 (ae1), mRNA. | NM_001111846 | 1,4-α-glucan-branching enzyme 2, chloroplastic/amyloplastic precursor (Zea mays) |
| onion | Allium roylei | reduced levels of tear-inducing lachrymatory factor | Allium roylei lachrymatory factor synthase (LFS) gene, partial cds. | HQ738919 | lachrymatory factor synthase, partial (Allium roylei) |
| tomato | Solanum lycopersicum | Parthenocarpic | Solanum lycopersicum chalcone synthase (CHS2) mRNA, complete cds. | HQ008773 | chalcone synthase (Solanum lycopersicum) |
