Difference between revisions of "Team:HUST-China/Basic Part"

 
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                         <li class="dropdown1"><a href="#" class="down-scroll">WETLAB</a>
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                                 <li><a href="https://2016.igem.org/Team:HUST-China/Experiments">Experiments</a></li>
 
                                 <li><a href="https://2016.igem.org/Team:HUST-China/Experiments">Experiments</a></li>
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                         <li class="dropdown1"><a class="down-scroll" href="https://2016.igem.org/Team:HUST-China/Model">MODELING</a>
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                                 <li><a href="https://2016.igem.org/Team:HUST-China/Model">Overview</a></li>
 
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                         <li class="dropdown1"><a class="down-scroll active" href="">PARTS</a>
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                                 <li><a href="https://2016.igem.org/Team:HUST-China/Parts">Summary</a></li>
 
                                 <li><a href="https://2016.igem.org/Team:HUST-China/Parts">Summary</a></li>
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                                 <li><a href="https://2016.igem.org/Team:HUST-China/Basic_Part">Basic part</a></li>
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                                 <li><a href="https://2016.igem.org/Team:HUST-China/Basic_Part">Basic Part</a></li>
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                                 <li><a href="https://2016.igem.org/Team:HUST-China/Composite_Part">Composite part</a></li>
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                                 <li><a href="https://2016.igem.org/Team:HUST-China/Composite_Part">Composite Part</a></li>
 
                                 <li><a href="https://2016.igem.org/Team:HUST-China/Part_Collection">Part Collection</a></li>
 
                                 <li><a href="https://2016.igem.org/Team:HUST-China/Part_Collection">Part Collection</a></li>
 
                             </ul>
 
                             </ul>
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                             </ul>
 
                             </ul>
 
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                         <li class="dropdown1"><a class="down-scroll" href="">TEAM</a>
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                         <li class="dropdown1"><a class="down-scroll" href="#">TEAM</a>
 
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                                 <li><a href="https://2016.igem.org/Team:HUST-China/Team">Team Roster</a></li>
 
                                 <li><a href="https://2016.igem.org/Team:HUST-China/Team">Team Roster</a></li>
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         <div class="container">
 
         <div class="container">
 
             <h2 class="text-center">Basic Part</h2>
 
             <h2 class="text-center">Basic Part</h2>
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             <p  style="color:#fff;margin-bottom:10px;text-align:center;">Following documented basic parts are respectively from three circuit this year:</p>
+
             <p  style="color:#fff;margin-bottom:10px;text-align:center;">Following documented basic parts are respectively from three circuits this year:</p>
 
         </div>
 
         </div>
 
     </div>
 
     </div>
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             <div class="ref"></div>
 
             <div class="ref"></div>
 
             <article>
 
             <article>
−
                 <h2>Prokaryotic version of Signal Filter:</h2>
+
                 <h2>Prokaryotic Version of Signal Filter</h2>
 
                 <img src="https://static.igem.org/mediawiki/2016/8/88/T--HUST-China--Description-Fig-Eukaryote.png" alt="">
 
                 <img src="https://static.igem.org/mediawiki/2016/8/88/T--HUST-China--Description-Fig-Eukaryote.png" alt="">
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                 <h3>Transcriptional regulation:</h3>
+
                 <h3>Transcriptional Regulation:</h3>
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                 <table border="1">
+
                 <table align="center" border="1">
 
                     <tr>
 
                     <tr>
 
                         <td>Part Number</td>
 
                         <td>Part Number</td>
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                 </table>
 
                 </table>
 
                 <p>Note: We didn’t submit the single parts of pRE, pRM and pR because they are too small to construct, but we have constructed and submitted the composite type of them, using GFP as the report gene in the characterization pathways.</p>
 
                 <p>Note: We didn’t submit the single parts of pRE, pRM and pR because they are too small to construct, but we have constructed and submitted the composite type of them, using GFP as the report gene in the characterization pathways.</p>
−
                 <h3>Protein promoter interaction:</h3>
+
                 <h3>Protein&Promoter Interaction:</h3>
 
                 <img src="https://static.igem.org/mediawiki/2016/0/06/T--HUST-China--Experiments-Fig10.png" alt="">
 
                 <img src="https://static.igem.org/mediawiki/2016/0/06/T--HUST-China--Experiments-Fig10.png" alt="">
−
                 <table border="1">
+
                 <table align="center" border="1">
 
                     <tr>
 
                     <tr>
 
                         <td>Part Number</td>
 
                         <td>Part Number</td>
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                         <td><a href="http://parts.igem.org/Part:BBa_K2036032"> BBa_K2036032 </a></td>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036032"> BBa_K2036032 </a></td>
 
                         <td>CII-TT-pRE-RBS-GFP-LVAssrAtag</td>
 
                         <td>CII-TT-pRE-RBS-GFP-LVAssrAtag</td>
−
                         <td>To characterize CII’s function.</td>
+
                         <td>To characterize function of CII.</td>
 
                     </tr>
 
                     </tr>
 
                 </table>
 
                 </table>
−
                 <h3>Protein&protein interaction:</h3>
+
                 <h3>Protein&Protein Interaction:</h3>
 
                 <img src="https://static.igem.org/mediawiki/2016/f/f9/T--HUST-China--Experiments-Fig6.png" alt="">
 
                 <img src="https://static.igem.org/mediawiki/2016/f/f9/T--HUST-China--Experiments-Fig6.png" alt="">
−
                 <table border="1">
+
                 <table align="center" border="1">
 
                     <tr>
 
                     <tr>
 
                         <td>Part Number</td>
 
                         <td>Part Number</td>
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                     </tr>
 
                     </tr>
 
                 </table>
 
                 </table>
−
                 <p>Note: CIII and CII circuits above share the same assembly composition of pRE-RBS-GFP-LVAssrAtag with CII and pRE characterization circuit so the part is not listed repeatedly.</p>
+
                 <p>Note: CIII and CII circuit above shares the same assembly composition of pRE-RBS-GFP-LVAssrAtag with CII and pRE characterization circuit so the part is not listed repeatedly.</p>
−
                 <h3>Tri-stable function:</h3>
+
                 <h3>Tri-stable Function:</h3>
 
                 <img src="https://static.igem.org/mediawiki/2016/1/17/T--HUST-China--Experiments-Fig14.png" alt="">
 
                 <img src="https://static.igem.org/mediawiki/2016/1/17/T--HUST-China--Experiments-Fig14.png" alt="">
−
                 <table border="1">
+
                 <table align="center" border="1">
 
                     <tr>
 
                     <tr>
 
                         <td>Part Number</td>
 
                         <td>Part Number</td>
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                         <td><a href="http://parts.igem.org/Part:BBa_K2036018"> BBa_K2036018 </a></td>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036018"> BBa_K2036018 </a></td>
 
                         <td> pRE-RBS-Cro-RBS-CII-TT-ptrp </td>
 
                         <td> pRE-RBS-Cro-RBS-CII-TT-ptrp </td>
−
                         <td> Used to construct the circuit. A part of the positive feedback system.</td>
+
                         <td> Used to construct the circuit. A part of the positive-feedback system.</td>
 
                     </tr>
 
                     </tr>
 
                     <tr>
 
                     <tr>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036019"> BBa_K2036019 </a></td>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036019"> BBa_K2036019 </a></td>
−
                         <td> RFP-LVAssrAtag-TT-pRM-RBS-GFP-LVAssrAtag </td>
+
                         <td> RFP-LAAssrAtag-TT-pRM-RBS-GFP-LVAssrAtag </td>
 
                         <td> The report part of the circuit.RFP is used as gene of interest 1 and GFP as gene of interest 2.</td>
 
                         <td> The report part of the circuit.RFP is used as gene of interest 1 and GFP as gene of interest 2.</td>
 
                     </tr>
 
                     </tr>
 
                     <tr>
 
                     <tr>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036020"> BBa_K2036020 </a></td>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036020"> BBa_K2036020 </a></td>
−
                         <td> RBS-CI-TT-pR-RBS-CIII-RBS-RFP-LVAssrAtag-TT-pRM-RBS-GFP-LVAssrAtag </td>
+
                         <td> RBS-CI-TT-pR-RBS-CIII-RBS-RFP-LAAssrAtag-TT-pRM-RBS-GFP-LVAssrAtag </td>
 
                         <td> Used to construct the circuit.</td>
 
                         <td> Used to construct the circuit.</td>
 
                     </tr>
 
                     </tr>
 
                 </table>
 
                 </table>
−
                 <h2>Eukaryotic version of Signal Filter:</h2>
+
                 <h2>Eukaryotic Version of Signal Filter</h2>
−
                 <h3>Functional protein and promoter:</h3>
+
                 <h3>Functional Protein and Promoter:</h3>
 
                 <img src="https://static.igem.org/mediawiki/2016/1/1e/T--HUST-China--Description-Fig-prokaryote.png" alt="">
 
                 <img src="https://static.igem.org/mediawiki/2016/1/1e/T--HUST-China--Description-Fig-prokaryote.png" alt="">
−
                 <table border="1">
+
                 <table align="center" border="1">
 
                     <tr>
 
                     <tr>
 
                         <td>Part Number</td>
 
                         <td>Part Number</td>
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                         <td><a href="http://parts.igem.org/Part:BBa_K2036004"> BBa_K2036004 </a></td>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036004"> BBa_K2036004 </a></td>
 
                         <td> ABF2</td>
 
                         <td> ABF2</td>
−
                         <td> A leucine zipper transcription factor which can activate pRD29A.</td>
+
                         <td> A leucine zipper transcription factor which can activate Prd29A.</td>
 
                     </tr>
 
                     </tr>
 
                     <tr>
 
                     <tr>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036003"> BBa_K2036003 </a></td>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036003"> BBa_K2036003 </a></td>
 
                         <td> SnRK2.2</td>
 
                         <td> SnRK2.2</td>
−
                         <td> Sucrose Nonfermenting1-Related Subfamily2(SnRK2s) protein kinase which can phosphorylate ABF2.</td>
+
                         <td> Sucrose Nonfermenting1 Related Subfamily2 (SnRK2s) protein kinase which can phosphorylate ABF2.</td>
 
                     </tr>
 
                     </tr>
 
                     <tr>
 
                     <tr>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036002"> BBa_K2036002 </a></td>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036002"> BBa_K2036002 </a></td>
−
                         <td> prd29A </td>
+
                         <td> Prd29A </td>
−
                         <td> A promoter in the Abscisic acid signaling network which can be activated by ABF2.</td>
+
                         <td> A promoter in the Abscisic Acid signaling network which can be activated by ABF2.</td>
 
                     </tr>
 
                     </tr>
 
                 </table>
 
                 </table>
−
                 <h3>Bi-stable-function</h3>
+
                 <h3>Bi-stable Function</h3>
 
                 <img src="https://static.igem.org/mediawiki/2016/b/be/T--HUST-China--Experiments-Fig4-2.png" alt="" class="half_width"><img src="https://static.igem.org/mediawiki/2016/b/be/T--HUST-China--Experiments-Fig4-2.png" alt="" class="half_width">
 
                 <img src="https://static.igem.org/mediawiki/2016/b/be/T--HUST-China--Experiments-Fig4-2.png" alt="" class="half_width"><img src="https://static.igem.org/mediawiki/2016/b/be/T--HUST-China--Experiments-Fig4-2.png" alt="" class="half_width">
−
                 <table border="1">
+
                 <table align="center" border="1">
 
                     <tr>
 
                     <tr>
 
                         <td>Part Number</td>
 
                         <td>Part Number</td>
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                     <tr>
 
                     <tr>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036029"> BBa_K2036029 </a></td>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036029"> BBa_K2036029 </a></td>
−
                         <td> Kozak-ABF2-TTADH1-prd29A-Kozak-GFP-LVAssrAtag </td>
+
                         <td> Kozak-ABF2-TTADH1-Prd29A-Kozak-GFP-LVAssrAtag </td>
 
                         <td> The report part of the circuit.GFP is used as gene of interest.</td>
 
                         <td> The report part of the circuit.GFP is used as gene of interest.</td>
 
                     </tr>
 
                     </tr>
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                     </tr>
 
                     </tr>
 
                 </table>
 
                 </table>
−
                 <h2>Application of Signal Filter:</h2>
+
                 <h2>Application of Signal Filter</h2>
 
                 <img src="https://static.igem.org/mediawiki/2016/a/a3/T--HUST-China--modeling-application.png" alt="">
 
                 <img src="https://static.igem.org/mediawiki/2016/a/a3/T--HUST-China--modeling-application.png" alt="">
−
                 <table border="1">
+
                 <table align="center" border="1">
 
                     <tr>
 
                     <tr>
 
                         <td>Part Number</td>
 
                         <td>Part Number</td>
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                         <td><a href="http://parts.igem.org/Part:BBa_K2036021"> BBa_K2036021 </a></td>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036021"> BBa_K2036021 </a></td>
 
                         <td> placm-pRE-RBS-Cro-RBS-CII-TT </td>
 
                         <td> placm-pRE-RBS-Cro-RBS-CII-TT </td>
−
                         <td> Used to construct the circuit. A part of the positive feedback system. placm can response to lactose signal.</td>
+
                         <td> Used to construct the circuit. A part of the positive-feedback system. placm can respond to lactose signal.</td>
 
                     </tr>
 
                     </tr>
 
                     <tr>
 
                     <tr>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036022"> BBa_K2036022 </a></td>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036022"> BBa_K2036022 </a></td>
 
                         <td> patp2-RBS-CI-TT-pR-RBS-CIII </td>
 
                         <td> patp2-RBS-CI-TT-pR-RBS-CIII </td>
−
                         <td> Used to construct the circuit. Patp2 can response to base signal.</td>
+
                         <td> Used to construct the circuit. Patp2 can respond to base signal.</td>
 
                     </tr>
 
                     </tr>
 
                     <tr>
 
                     <tr>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036023"> BBa_K2036023 </a></td>
 
                         <td><a href="http://parts.igem.org/Part:BBa_K2036023"> BBa_K2036023 </a></td>
 
                         <td> RBS-iLDH-TT-pRM-RBS-beta-galactosidase </td>
 
                         <td> RBS-iLDH-TT-pRM-RBS-beta-galactosidase </td>
−
                         <td> The report part of the application circuit.iLDH is used as gene of interest 1 and beta-galactosidase the gene of interest 2.</td>
+
                         <td> The report part of the application circuit.iLDH is used as gene of interest 1 and beta-galactosidase as gene of interest 2.</td>
 
                     </tr>
 
                     </tr>
 
                     <tr>
 
                     <tr>

Latest revision as of 23:36, 19 October 2016

Parts

Basic Part

Following documented basic parts are respectively from three circuits this year:

Prokaryotic Version of Signal Filter

Transcriptional Regulation:

Part Number Name Description
BBa_K2036000 RBS-CII A protein in bacteriophage λ operon which can activate promoter RE.
BBa_K2036001 CIII A protein in bacteriophage λ operon which can free CII from its inhibitor, FtsH.
BBa_K2036006 RBS-CIII A protein in bacteriophage λ operon which can free CII from its inhibitor, FtsH.

Note: We didn’t submit the single parts of pRE, pRM and pR because they are too small to construct, but we have constructed and submitted the composite type of them, using GFP as the report gene in the characterization pathways.

Protein&Promoter Interaction:

Part Number Name Description
BBa_K2036007 RBS-CII-RBS-CII A protein in bacteriophage λ operon which can activate promoter RE. We use tandem to amplify its function.
BBa_K2036012 RBS-CII-TT A protein in bacteriophage λ operon which can activate promoter RE. We use tandem to amplify its function.
BBa_K2036011 pRE-GFP-LVAssrAtag The report part of the characterization pathway and it’s used to characterize promoter RE.
BBa_K2036032 CII-TT-pRE-RBS-GFP-LVAssrAtag To characterize function of CII.

Protein&Protein Interaction:

Part Number Name Description
BBa_K2036007 RBS-CII-RBS-CII A protein in bacteriophage λ operon which can activate promoter RE. We use tandem to amplify its function.
BBa_K2036008 RBS-CIII-RBS-CIII A protein in bacteriophage λ operon which can free CII from its inhibitor, FtsH. We use tandem to amplify its function.
BBa_K2036013 RBS-CII-TT-pRE-RBS-GFP-LVAssrAtag To characterize CII’s function.

Note: CIII and CII circuit above shares the same assembly composition of pRE-RBS-GFP-LVAssrAtag with CII and pRE characterization circuit so the part is not listed repeatedly.

Tri-stable Function:

Part Number Name Description
BBa_K2036018 pRE-RBS-Cro-RBS-CII-TT-ptrp Used to construct the circuit. A part of the positive-feedback system.
BBa_K2036019 RFP-LAAssrAtag-TT-pRM-RBS-GFP-LVAssrAtag The report part of the circuit.RFP is used as gene of interest 1 and GFP as gene of interest 2.
BBa_K2036020 RBS-CI-TT-pR-RBS-CIII-RBS-RFP-LAAssrAtag-TT-pRM-RBS-GFP-LVAssrAtag Used to construct the circuit.

Eukaryotic Version of Signal Filter

Functional Protein and Promoter:

Part Number Name Description
BBa_K2036005 PP2CA Clade A protein phosphatases type 2C which can dephosphorylate ABF2.
BBa_K2036004 ABF2 A leucine zipper transcription factor which can activate Prd29A.
BBa_K2036003 SnRK2.2 Sucrose Nonfermenting1 Related Subfamily2 (SnRK2s) protein kinase which can phosphorylate ABF2.
BBa_K2036002 Prd29A A promoter in the Abscisic Acid signaling network which can be activated by ABF2.

Bi-stable Function

Part Number Name Description
BBa_K2036025 Kozak-Snrk2.2-TTADH1-pCyc Used to construct the circuit.
BBa_K2036029 Kozak-ABF2-TTADH1-Prd29A-Kozak-GFP-LVAssrAtag The report part of the circuit.GFP is used as gene of interest.
BBa_K2036031 PP2CA-TTADH1-pCyc Used to construct the circuit.

Application of Signal Filter

Part Number Name Description
BBa_K2036021 placm-pRE-RBS-Cro-RBS-CII-TT Used to construct the circuit. A part of the positive-feedback system. placm can respond to lactose signal.
BBa_K2036022 patp2-RBS-CI-TT-pR-RBS-CIII Used to construct the circuit. Patp2 can respond to base signal.
BBa_K2036023 RBS-iLDH-TT-pRM-RBS-beta-galactosidase The report part of the application circuit.iLDH is used as gene of interest 1 and beta-galactosidase as gene of interest 2.
BBa_K2036028 placm-pRE-RBS-Cro-RBS-CII-TT-patp2-RBS-CI-TT-pR-RBS-CIII-RBS-ompA-iLDH-TT-pRM-RBS-beta-galactosidase The whole circuit of the application.