Difference between revisions of "Team:DTU-Denmark/Safety"

 
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<p>Please visit <a href="https://2016.igem.org/Safety">the main Safety page</a> to find this year's safety requirements & deadlines, and to learn about safe & responsible research in iGEM.</p>
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                        <h1>Safety<p class="lead">Working in the laboratory with different organisms and reagents may cause a threat to human health and the environment by wrong disposal of waste. With this in mind, we have chosen to work with a GRAS organism and have taken precausion while working in the lab</p></h1>
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                            <p>"Safety is something that happens between your ears, not something you hold in your hands"</p>
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                            <small>Jeff Cooper</small>
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<p>On this page of your wiki, you should write about how you are addressing any safety issues in your project. The wiki is a place where you can <strong>go beyond the questions on the safety forms</strong>, and write about whatever safety topics are most interesting in your project. (You do not need to copy your safety forms onto this wiki page.)</p>
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        <h2 class="h2">Precautionary Work</h2>
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                <p>"Safety is something that happens between your ears, not something you hold in your hands"</p>
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                <small>Jeff Cooper</small>
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<p>To minimize the risks while working on the iGEM project we chose the chassis organism <i>Yarrowia lipolytica</i> which is generally regarded as safe (GRAS) and non-pathogenic to humans. Aside from that we worked with the <i>Escherichia coli</i> DH5 alpha laboratory strain which does not pose a threat to healthy humans.  We also did some growth experiments with  <i>Saccharomyces cerevisiae</i>, another GRAS organism. </p>  
  
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<p>In our choice of genetic material we considered the risks the origin organism could pose. We only used genes from safe sources such as <i>Xanthophyllomyces dendrorhous</i>, <i>Renilla reinformis</i> and the human gene for pre-insulin codon optimised with our own codon-optimization tool for <i>Y. lipolityca</i>.</p>
  
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        <h2 class="h2">Laboratory Safety Measures</h2>
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          <p>All work with genetically modified organisms (GMOs) were performed in class 1 GMO laboratories following the required procedures. This include amongst others wearing laboratory coats, gloves and goggles, disinfecting surfaces, tools etc. with ethanol and autoclaving all waste, used tools and discarded cultures. We used laf-benches whenever possible to avoid the fire hazard of gas flames when performing sterile work. The Hamilton robot used as fermentation platform was decontaminated before and after each use with UV light.</p>
  
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<p>In our work with hazardous substances we took extra safety measures and worked with utmost caution. We used laf-benches and powerful suction in the experiments performed with 2-Mercaptoethanol (BME). SYBR-Safe was always handled with gloves and caution. Containers with liquid nitrogen were only opened and cooling conducted in well ventilated rooms.
<h5>Safe Project Design</h5>
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            <li><a href="#section-1">Precautionary work</a></li>
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<p>Does your project include any safety features? Have you made certain decisions about the design to reduce risks? Write about them here! For example:</p>
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<li>Choosing a non-pathogenic chassis</li>
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<li>Choosing parts that will not harm humans / animals / plants</li>
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<li>Substituting safer materials for dangerous materials in a proof-of-concept experiment</li>
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<li>Including an "induced lethality" or "kill-switch" device</li>
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<h5>Safe Lab Work</h5>
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<p>What safety procedures do you use every day in the lab? Did you perform any unusual experiments, or face any unusual safety issues? Write about them here!</p>
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<h5>Safe Shipment</h5>
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<p>Did you face any safety problems in sending your DNA parts to the Registry? How did you solve those problems?</p>
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Latest revision as of 00:18, 20 October 2016

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Bootstrap Example

Safety

Working in the laboratory with different organisms and reagents may cause a threat to human health and the environment by wrong disposal of waste. With this in mind, we have chosen to work with a GRAS organism and have taken precausion while working in the lab


Precautionary Work

"Safety is something that happens between your ears, not something you hold in your hands"

Jeff Cooper

To minimize the risks while working on the iGEM project we chose the chassis organism Yarrowia lipolytica which is generally regarded as safe (GRAS) and non-pathogenic to humans. Aside from that we worked with the Escherichia coli DH5 alpha laboratory strain which does not pose a threat to healthy humans. We also did some growth experiments with Saccharomyces cerevisiae, another GRAS organism.

In our choice of genetic material we considered the risks the origin organism could pose. We only used genes from safe sources such as Xanthophyllomyces dendrorhous, Renilla reinformis and the human gene for pre-insulin codon optimised with our own codon-optimization tool for Y. lipolityca.

Laboratory Safety Measures

All work with genetically modified organisms (GMOs) were performed in class 1 GMO laboratories following the required procedures. This include amongst others wearing laboratory coats, gloves and goggles, disinfecting surfaces, tools etc. with ethanol and autoclaving all waste, used tools and discarded cultures. We used laf-benches whenever possible to avoid the fire hazard of gas flames when performing sterile work. The Hamilton robot used as fermentation platform was decontaminated before and after each use with UV light.

In our work with hazardous substances we took extra safety measures and worked with utmost caution. We used laf-benches and powerful suction in the experiments performed with 2-Mercaptoethanol (BME). SYBR-Safe was always handled with gloves and caution. Containers with liquid nitrogen were only opened and cooling conducted in well ventilated rooms.

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