Difference between revisions of "Team:Paris Bettencourt/Parts"

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{{Paris_Bettencourt}}
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{{Paris_Bettencourt/Menu}}
 +
{{Paris_Bettencourt/Wiki}}
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 +
                                            <!-- Code by the 2016 Paris Bettencourt -->
 +
 
 
<html>
 
<html>
 +
<link href='https://fonts.googleapis.com/css?family=Open+Sans:400,300,700' rel='stylesheet' type='text/css'>
 +
<style>
 +
a:hover {
 +
text-decoration : none;
 +
}
  
 +
html {
 +
height : 100%;
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}
  
 +
body {
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position : relative;
 +
height : 100%;
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margin-left : 0;
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margin-right : 0;
 +
margin-top : 0;
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}
  
 +
#topheader {
 +
position : relative;
 +
margin-top : -120px;
 +
margin-left : 0px;
 +
margin-right : 0;
 +
padding:0;
 +
width : 100%;
 +
height : 350px;
 +
background-image : url("https://static.igem.org/mediawiki/2016/7/75/Paris_Bettencourt-Achievements_Top.jpeg");
 +
background-size : cover;
 +
}
  
 +
#subheader {
 +
position : relative ;
 +
width : 100%;
 +
height : 100%;
 +
text-align : center;
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background-color : rgb(255,255,255);
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}
  
 +
#definition {
 +
width : 80%;
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vertical-align : middle;
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display : inline-block;
 +
line-height : normal;
 +
text-align : center;
 +
position : relative;
 +
margin-top : 0px;
 +
}
  
−
<div class="column full_size">
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#project {
 +
font-family: Open Sans, sans-serif;
 +
text-align : center;
 +
font-size : 22px;
 +
vertical-align : middle;
 +
color : rgb(150,149,149);
 +
}
 +
.definition {
 +
position : inline-block;
 +
font-family: Open Sans, sans-serif;
 +
text-align : center;
 +
font-size : 22px;
 +
vertical-align : middle;
 +
color : rgb(150,149,149);
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}
  
 +
                .descript2 {
 +
                        width : 60%;
 +
                        margin-left : 0%;
 +
                        font-size : 18px;
 +
                        text-align : center;
 +
                        color : rgb(255,0,99);
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                        margin-top : 0px;
 +
                        display : none;
 +
                        vertical-align : middle;
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                        line-height : normal;
 +
                        background-color : transparent;
 +
                        z-index : 91;
 +
                }
  
−
<p>Each team will make new parts during iGEM and will submit them to the Registry of Standard Biological Parts. The iGEM software provides an easy way to present the parts your team has created. The <code>&lt;groupparts&gt;</code> tag (see below) will generate a table with all of the parts that your team adds to your team sandbox.</p>
+
.layout {
−
<p>Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without needing to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.</p>
+
display : inline-block;
 +
width : 100%;
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height : 100%;
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z-index : 90;
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vertical-align : middle;
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line-height : 300px;
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text-align : center;
 +
display: flex;
 +
justify-content: center;
 +
align-items: center;
 +
-webkit-display: flex;
 +
-webkit-justify-content: center;
 +
-webkit-align-items: center;
 +
                        vertical-align : middle;
 +
}
  
 +
                .separation {
 +
                        width: 100%;
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                        height : 100px;
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                }
  
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</div>
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/* Panels */
 +
.panel {
 +
    margin: 0 auto;
 +
    color: rgb(30,39,43);
 +
    font-family: 'Open Sans', sans-serif;
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}
 +
.panel a {
 +
display: inline-block;
 +
    color: rgb(46,43,52);
 +
    text-decoration:none;
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}
  
 +
/* Subpanels */
 +
.narrowimg {/* Subpanels background*/
 +
    /*position:absolute;*/
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    z-index:2;
 +
    opacity:0.3;
 +
    filter: alpha(opacity=30);
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}
 +
.titlebox {/* Subpanels Title*/
 +
    z-index:1;
 +
    position:relative;
 +
    bottom: 200px;
 +
    background:transparent;
 +
}
  
 +
.subpanel2 { /* Projects */
 +
    float: left;
 +
    width:250px;
 +
    height:250px;
 +
    font-size:20px;
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    text-align:center;
 +
    margin-top:5px;
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    margin-bottom:5px;
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    margin-right:5px;
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    margin-left:5px;
 +
    border-radius:7px;
 +
    overflow:hidden;
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}
 +
.subpanel2:hover{
 +
    font-weight:bold;
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}
 +
.subpanel2:hover .narrowimg {
 +
    opacity:0.8;
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    filter: alpha(opacity=80);
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}
 +
/* pages */
 +
.subpanel4 { /* divide page in 3 */
 +
    float:left;
 +
    width:364px;
 +
    height:492px;
 +
    font-size:22px;
 +
    margin-top:0;
 +
    margin-right:10px;
 +
}
 +
.subpanel6 { /* Pages */
 +
    height:240.5px;
 +
    margin:0;
 +
    margin-bottom:11px;
 +
    border-radius:7px;
 +
    overflow:hidden;
 +
    background:rgb(255,255,255);
 +
    color:Black;
 +
    text-align:center;
 +
}
 +
.subpanel6:hover{
 +
    font-weight:bold;
 +
}
 +
.subpanel6:hover .narrowimg {
 +
    opacity:0.8;
 +
    filter: alpha(opacity=80);
 +
}
  
  
 +
/* THE CSS CODE FOR TABLE */
 +
a{text-decoration: underline;}
  
−
<div class="column half_size">
 
−
<div class="highlight">
 
−
<h5>Note</h5>
 
−
<p>Note that parts must be documented on the <a href="http://parts.igem.org/Main_Page"> Registry</a>. This page serves to <i>showcase</i> the parts you have made. Future teams and other users and are much more likely to find parts by looking in the Registry than by looking at your team wiki.</p>
 
−
</div>
 
−
</div>
 
  
 +
.table_style {
 +
display: inline-block;
 +
width: 90%;
 +
      }
  
 +
tr:hover { background: #F5FEEE; } /* Hover cell effect! */
  
 +
</style>
  
−
<div class="column half_size">
 
  
−
<h5>Adding parts to the registry</h5>
+
<head></head>
−
<p>You can add parts to the Registry at our <a href="http://parts.igem.org/Add_a_Part_to_the_Registry">Add a Part to the Registry</a> link.</p>
+
−
<p>We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better you will remember all the details about your parts. Remember, you don't need to send us the DNA sample before you create an entry for a part on the Registry. (However, you <b>do</b> need to send us the DNA sample before the Jamboree. If you don't send us a DNA sample of a part, that part will not be eligible for awards and medal criteria.)</p>
+
−
</div>
+
  
  
 +
<body>
  
 +
<div id=topheader></div>
  
 +
<div id=subheader>
 +
<div id=definition>
 +
<div style="margin-top:20px; margin-bottom:20px"></div>
  
−
<div class="column half_size">
 
  
−
<h5>What information do I need to start putting my parts on the Registry?</h5>
+
<h2 class="red">Our Library of Standard Biological Parts</h2>
−
<p>The information needed to initially create a part on the Registry is:</p>
+
−
<ul>
+
−
<li>Part Name</li>
+
−
<li>Part type</li>
+
−
<li>Creator</li>
+
−
<li>Sequence</li>
+
−
<li>Short Description (60 characters on what the DNA does)</li>
+
−
<li>Long Description (Longer description of what the DNA does)</li>
+
−
<li>Design considerations</li>
+
−
</ul>
+
  
−
<p>
+
<table id=table_style>
−
We encourage you to put up <em>much more</em> information as you gather it over the summer. If you have images, plots, characterization data and other information, please also put it up on the part page. </p>
+
  <tr style="background-color:#438CEE">
 +
    <th Colspan="4" style="background-color:#8B1813; color:#FFFFFF; font-size:20px;">Enzymes for Stain Digestion</th>
 +
  </tr>
 +
  <tr style="background-color:#138B3F">
 +
    <th style="background-color:#DDDDDD">BioBrick ID</th>
 +
    <th style="background-color:#DDDDDD">Enzyme name</th>
 +
    <th style="background-color:#DDDDDD">Description</th>
 +
    <th style="background-color:#DDDDDD">Reference</th>
 +
  </tr>
  
−
</div>
+
  <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043001">BBa_K2043001</a></td>
 +
    <td>catA</td>
 +
    <td style="text-align: justify"><i>catA</i>, Catechol-1,2-dihydrogenase from <i>Acinetobacter pittii</i> codon optimised for <i>E. coli</i>. </td>
 +
    <td style="text-align: justify">DOI 10.1007/s10930-015-9637-7</td>
 +
  </tr>
  
 +
  <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043002">BBa_K2043002</a></td>
 +
    <td>catA-FBD1</td>
 +
    <td style="text-align: justify"><i>catA</i>, Catechol-1,2-dihydrogenase from <i>Acinetobacter pittii</i> codon optimised for <i>E. coli</i> and fused on the N-terminal with FBD1 </td>
 +
    <td style="text-align: justify"></td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043003">BBa_K2043003</a></td>
 +
    <td>catA-FBD10</td>
 +
    <td style="text-align: justify"><i>catA</i>, Catechol-1,2-dihydrogenase from <i>Acinetobacter pittii</i> codon optimised for <i>E. coli</i> and fused on the N-terminal with FBD10 </td>
 +
    <td style="text-align: justify"></td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043004">BBa_K2043004</a></td>
 +
    <td>xylE</td>
 +
    <td style="text-align: justify"><i>xylE</i>, Catechol-2,3-dihydrogenase from <i>Pseudomonas putida</i> codon optimised for <i>E. coli</i> </td>
 +
    <td style="text-align: justify">Eur. J. Biochem. 229, 113-118 (1995)</td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043005">BBa_K2043005</a></td>
 +
    <td>xylE-FBD1</td>
 +
    <td style="text-align: justify"><i>xylE</i>, Catechol-2,3-dihydrogenase from <i>Pseudomonas putida</i> codon optimised for <i>E. coli</i> and fused in the N-terminal with FBD1 </td>
 +
    <td style="text-align: justify"></td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043006">BBa_K2043006</a></td>
 +
    <td>xylE-FBD10</td>
 +
    <td style="text-align: justify"><i>xylE</i>, Catechol-2,3-dihydrogenase from <i>Pseudomonas putida</i> codon optimised for <i>E. coli</i> and fused in the N-terminal with FBD10 </td>
 +
    <td style="text-align: justify"></td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043007">BBa_K2043007</a></td>
 +
    <td>bpuI</td>
 +
    <td style="text-align: justify"><i>bpuI</i>, laccase from <i>Bacillus pumillus</i> codon optimised for <i>E. coli</i> </td>
 +
    <td style="text-align: justify">DOI 10.1016/j.biotechadv.2006.04.003</td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043008">BBa_K2043008</a></td>
 +
    <td>bpuI-FBD1</td>
 +
    <td style="text-align: justify"><i>bpuI</i>, laccase from <i>Bacillus pumillus</i> codon optimised for <i>E. coli</i> and fused in the N-terminal with FBD1</td>
 +
    <td style="text-align: justify"></td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043009">BBa_K2043009</a></td>
 +
    <td>bpuI-FBD10</td>
 +
    <td style="text-align: justify"><i>bpuI</i>, laccase from <i>Bacillus pumillus</i> codon optimised for <i>E. coli</i> and fused in the N-terminal with FBD10</td>
 +
    <td style="text-align: justify"></td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043010">BBa_K2043010</a></td>
 +
    <td>GFP-FBD1</td>
 +
    <td style="text-align: justify">GFP gene, codon optimised for <i>E. coli</i> and fused in the N-terminal with FBD1 </td>
 +
    <td style="text-align: justify"></td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043011">BBa_K2043011</a></td>
 +
    <td>GFP-FBD2</td>
 +
    <td style="text-align: justify">GFP gene, codon optimised for <i>E. coli</i> and fused in the N-terminal with FBD2 </td>
 +
    <td style="text-align: justify"</td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043012">BBa_K2043012</a></td>
 +
    <td>GFP-FBD5</td>
 +
    <td style="text-align: justify">GFP gene, codon optimised for <i>E. coli</i> and fused in the N-terminal with FBD5 </td>
 +
    <td style="text-align: justify"></td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043013">BBa_K2043013</a></td>
 +
    <td>GFP-FBD6</td>
 +
    <td style="text-align: justify">GFP gene, codon optimised for <i>E. coli</i> and fused in the N-terminal with FBD6</td>
 +
    <td style="text-align: justify"></td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043014">BBa_K2043014</a></td>
 +
    <td>GFP-FBD7</td>
 +
    <td style="text-align: justify">GFP gene, codon optimised for <i>E. coli</i> and fused in the N-terminal with FBD7 </td>
 +
    <td style="text-align: justify"></td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043015">BBa_K2043015</a></td>
 +
    <td>GFP-FBD8</td>
 +
    <td style="text-align: justify">GFP gene, codon optimised for <i>E. coli</i> and fused in the N-terminal with FBD8 </td>
 +
    <td style="text-align: justify"></td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043016">BBa_K2043016</a></td>
 +
    <td>GFP-FBD9</td>
 +
    <td style="text-align: justify">GFP gene, codon optimised for <i>E. coli</i> and fused in the N-terminal with FBD9 </td>
 +
    <td style="text-align: justify"></td>
 +
  </tr>
 +
 
 +
    <tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K2043017">BBa_K2043017</a></td>
 +
    <td>GFP-FBD10</td>
 +
    <td style="text-align: justify">GFP gene, codon optimised for <i>E. coli</i> and fused in the N-terminal with FBD10 </td>
 +
    <td style="text-align: justify"></td>
 +
  </tr>
 +
</table>
  
−
<div class="column half_size">
 
  
−
<h5>Inspiration</h5>
+
<div style="margin-top:20px; margin-bottom:20px"></div>
−
<p>We have a created  a <a href="http://parts.igem.org/Well_Documented_Parts">collection of well documented parts</a> that can help you get started.</p>
+
  
−
<p> You can also take a look at how other teams have documented their parts in their wiki:</p>
+
<div class="panel" >
−
<ul>
+
  <a href="https://2016.igem.org/Team:Paris_Bettencourt/Results" title="Results">
−
<li><a href="https://2014.igem.org/Team:MIT/Parts"> 2014 MIT </a></li>
+
    <div id="pspanel" class="subpanel2"  onmouseover="chgtrans(this)">
−
<li><a href="https://2014.igem.org/Team:Heidelberg/Parts"> 2014 Heidelberg</a></li>
+
      <img class="narrowimg" src="https://static.igem.org/mediawiki/2016/d/db/T--Paris_Bettencourt--results_icon.jpg" width="400px" height="300px"/>
−
<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Parts">2014 Tokyo Tech</a></li>
+
      <div class="titlebox">
−
</ul>
+
<center><img src="https://static.igem.org/mediawiki/2016/3/3e/T--Paris_Bettencourt--results_logo.png" style="height:90px;margin-top:-30px;"/></center>
−
</div>
+
<div style="width:60%;margin-left:20%;margin-bottom:0px;"><hr></div>
 +
Results
 +
      </div>
 +
    </div>
 +
  </a>
  
−
<div class="column full_size">
+
  <a href="https://2016.igem.org/Team:Paris_Bettencourt/Medal_Requirements" title="Medal Requirements">
−
<h5>Part Table </h5>
+
    <div id="pspanel" class="subpanel2"  onmouseover="chgtrans(this)">
−
<div class="highlight">
+
      <img class="narrowimg" src="https://static.igem.org/mediawiki/2016/b/bb/T--Paris_Bettencourt--medal_icon.jpg" width="400px" height="300px"/>
 +
      <div class="titlebox">
 +
<center><img src="https://static.igem.org/mediawiki/2016/2/2c/T--Paris_Bettencourt--medal_logo.png" style="height:90px;margin-top:-30px;"/></center>
 +
<div style="width:60%;margin-left:20%;margin-bottom:0px;"><hr></div>
 +
Medal Requirements
 +
      </div>
 +
    </div>
 +
  </a>
  
 +
  <a href="https://2016.igem.org/Team:Paris_Bettencourt/Parts" title="Parts">
 +
    <div id="pspanel" class="subpanel2"  onmouseover="chgtrans(this)">
 +
      <img class="narrowimg" src="https://static.igem.org/mediawiki/2016/0/03/T--Paris_Bettencourt--parts_icon.jpg" width="400px" height="300px"/>
 +
      <div class="titlebox">
 +
<center><img src="https://static.igem.org/mediawiki/2016/3/3a/T--Paris_Bettencourt--biobrick_logo.png" style="height:90px;margin-top:-30px;"/></center>
 +
<div style="width:60%;margin-left:20%;margin-bottom:0px;"><hr></div>
 +
Parts
 +
      </div>
 +
    </div>
 +
  </a>
  
−
</html>
+
  <a href="https://2016.igem.org/Team:Paris_Bettencourt/Interlab_Study" title="Interlab Study">
−
<groupparts>iGEM2016 Example</groupparts>
+
    <div id="pspanel" class="subpanel2"  onmouseover="chgtrans(this)">
−
<html>
+
      <img class="narrowimg" src="https://static.igem.org/mediawiki/2016/2/2e/T--Paris_Bettencourt--interlab_icon.jpg" width="400px" height="300px"/>
 +
      <div class="titlebox">
 +
<center><img src="https://static.igem.org/mediawiki/2016/8/85/T--Paris_Bettencourt--interlab_logo.png" style="height:90px;margin-top:-30px;"/></center>
 +
<div style="width:60%;margin-left:20%;margin-bottom:0px;"><hr></div>
 +
Interlab Study
 +
      </div>
 +
    </div>
 +
  </a>
 +
</div>
 
</div>
 
</div>
 
</div>
 
</div>
  
−
 
+
</body>
  
  
 
</html>
 
</html>
 +
{{Paris_Bettencourt/Footer}}

Latest revision as of 00:36, 20 October 2016


Our Library of Standard Biological Parts

Enzymes for Stain Digestion
BioBrick ID Enzyme name Description Reference
BBa_K2043001 catA catA, Catechol-1,2-dihydrogenase from Acinetobacter pittii codon optimised for E. coli. DOI 10.1007/s10930-015-9637-7
BBa_K2043002 catA-FBD1 catA, Catechol-1,2-dihydrogenase from Acinetobacter pittii codon optimised for E. coli and fused on the N-terminal with FBD1
BBa_K2043003 catA-FBD10 catA, Catechol-1,2-dihydrogenase from Acinetobacter pittii codon optimised for E. coli and fused on the N-terminal with FBD10
BBa_K2043004 xylE xylE, Catechol-2,3-dihydrogenase from Pseudomonas putida codon optimised for E. coli Eur. J. Biochem. 229, 113-118 (1995)
BBa_K2043005 xylE-FBD1 xylE, Catechol-2,3-dihydrogenase from Pseudomonas putida codon optimised for E. coli and fused in the N-terminal with FBD1
BBa_K2043006 xylE-FBD10 xylE, Catechol-2,3-dihydrogenase from Pseudomonas putida codon optimised for E. coli and fused in the N-terminal with FBD10
BBa_K2043007 bpuI bpuI, laccase from Bacillus pumillus codon optimised for E. coli DOI 10.1016/j.biotechadv.2006.04.003
BBa_K2043008 bpuI-FBD1 bpuI, laccase from Bacillus pumillus codon optimised for E. coli and fused in the N-terminal with FBD1
BBa_K2043009 bpuI-FBD10 bpuI, laccase from Bacillus pumillus codon optimised for E. coli and fused in the N-terminal with FBD10
BBa_K2043010 GFP-FBD1 GFP gene, codon optimised for E. coli and fused in the N-terminal with FBD1
BBa_K2043011 GFP-FBD2 GFP gene, codon optimised for E. coli and fused in the N-terminal with FBD2
BBa_K2043012 GFP-FBD5 GFP gene, codon optimised for E. coli and fused in the N-terminal with FBD5
BBa_K2043013 GFP-FBD6 GFP gene, codon optimised for E. coli and fused in the N-terminal with FBD6
BBa_K2043014 GFP-FBD7 GFP gene, codon optimised for E. coli and fused in the N-terminal with FBD7
BBa_K2043015 GFP-FBD8 GFP gene, codon optimised for E. coli and fused in the N-terminal with FBD8
BBa_K2043016 GFP-FBD9 GFP gene, codon optimised for E. coli and fused in the N-terminal with FBD9
BBa_K2043017 GFP-FBD10 GFP gene, codon optimised for E. coli and fused in the N-terminal with FBD10
Results
Medal Requirements
Parts
Interlab Study
Centre for Research and Interdisciplinarity (CRI)
Faculty of Medicine Cochin Port-Royal, South wing, 2nd floor
Paris Descartes University
24, rue du Faubourg Saint Jacques
75014 Paris, France
+33 1 44 41 25 22/25
igem2016parisbettencourt@gmail.com
2016.igem.org