Difference between revisions of "Team:NYMU-Taipei/Demonstrate"

 
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<div id="wrap">
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  <div class="prototypeprototypesp">
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        <div class="imageimage00">
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            <img src="https://static.igem.org/mediawiki/2016/2/29/T--NYMU-Taipei--%E5%88%86%E9%A0%81_prototype_%E6%89%8B%E6%A9%9F%E7%89%88.jpg" width="100%" height="100%" />
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        </div>
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<div class="imageimage1">
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    <div class="prototypeprototype">
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        <div class="imageimage00">
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            <img src="https://static.igem.org/mediawiki/2016/0/0e/%E5%88%86%E9%A0%81_prototype_%E5%8A%A0%E5%AD%97%E7%89%88.jpg" width="100%" height="100%" />
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<h1 style="font-size:72px; white-space:pre; color:white;">TITLE</h1><hr />
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<div id="wrap">
<p style="white-space:pre; color:white;">Besides the fungal killing switch and the functional prototype that help reduce concerns over GMO</p>
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</div>
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<div class="prototypeprototype">
<br>
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<div class="fund">
 
<div class="fund">
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<h1 style="margin-top:30px; margin-bottom:0px; height:50px;">Integrated Orchard Safeguard</h1></div>
  
<h1>Integrated Orchard Safeguard</h1>
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<div class="fund">
  
<h2>Overview</h2><hr />
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<h2 style="margin-top:20px; margin-bottom:10px;">Overview</h2><hr />
  
<p>In our project, we tried to design a killing switch circuit to make genetically engineered fungus feasible. Despite decreasing the risk and concerns from inside, in prototype, we try to achieve the same goal from the outside. Current method in applying entomogenous fungus are dissolved fungus powder into solution and practice large scale spraying. However, we are dealing with genetically-engineered fungus, the better we implement them, the better to the eco-system, the environment and us.</p>
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<p style="font-size:16px;">Current method of applying entomogenous fungal pesticides is large-scaled spraying fungal spore solution. However, deployment of genetically engineered fungal pesticides using contemporary methods puts the local eco-system at risk of disruption by the residual fungi.</p>
  
<p>In practice, the bait will appeal to the male oriental fruit fly, but it is the female one that is high reproductive and destructive. In our project, we come up with the idea of infect the female oriental fruit fly while mating, and conduct related experiment on mating infection rate. IR counter, another feature of our prototype, record and provide in-time information of the orchard, this can pest group size, and other climatological information include temperature, the humidity…etc. With a smartphone app, we are able to inform the grower.</p>
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<p style="font-size:16px;">Our project is divided into two main focuses to neutralize these risks. While our team members in wet lab aim to design a killing switch circuit to decrease the environmental risk of genetically engineered fungus from within the organism. Our prototype team attempt introduce an alternative to large-scaled spraying of genetically modified biopesticide by designing and building an Integrated Orchard Safeguard system centered around our prototype bait trap.</p>
  
<p>With a bait trap, an IR counter and a smartphone app, we are bringing the integrated orchard safeguard to iGEM.</p>
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<p style="font-size:16px;">In modern bait traps, the bait only attract male <i>B. dorsalis</i>. However, it is the females that are responsible for the species' high reproductiveness and destructiveness. This is why we designed the bait trap to attract, infect, and release male flies to allow M. anisopliae infection to spread to the females via copulation with infected males. The IR counter, another feature of our prototype, record and provide information including pest population size and meteorological data, such as temperature and humidity. Furthermore, farmers can monitor their orchards with our smartphone app that receives data from the IR counter.</p>
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 +
<p style="font-size:16px;">We present the Integrated Orchard Safeguard, an information network system that connects our <font color="#FF0000"><b>bait trap, IR counter and smartphone app together.</b></font></p>
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<div align="center">
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<img src="https://static.igem.org/mediawiki/2016/c/cb/T--NYMU-Taipei--photo-OFF-related1-14795729_902665079864034_1263097426_o.png" width="80%" /></div>
  
 
</div>
 
</div>
  
<din class="fund">
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<div class="fund">
  
<h2>Bait Trap</h2><hr />
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<h2 style="margin-top:30px; margin-bottom:10px;">New Generation Bait Trap</h2><hr />
  
<p>After the bait trap receives the population size of oriental fruit fly from IR counter, it will then automatically regulate the frequency of spraying the fungal solution and the length of the door opening time.</p>
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<p style="font-size:16px;">After the bait trap receives the population size information of <i>B. dorsalis</i> from the IR counter, it will then <font color="#FF0000"><b>automatically regulate the frequency </b></font>of the spray of fungal spore solution and the opening duration of the door.</p>
  
<img src="https://static.igem.org/mediawiki/2016/6/69/T-NYMU-Taipei-photo-counter_in_field.jpg" width="70%" style="margin:auto;"/>
 
  
<h3>Design</h3><hr />
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<img src="https://static.igem.org/mediawiki/2016/3/34/T--NYMU-Taipei--%E4%B8%BB%E9%A0%81-prototype.jpg" width="50%" />
 +
</div>
  
<h3>1. The First Layer – Microcontroller, Power</h3><br />
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<div class="fund">
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Design</h3><br />
 +
<img src="https://static.igem.org/mediawiki/2016/a/a7/T-NYMU-Taipei-photo-trap_1.png" width="100%" />
  
<img src="圖片位置" style="float: left; margin: 15px">
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<h4 style="margin-top:30px; margin-bottom:10px;">1. The First Layer – Microcontroller, Power</h4><br />
<p style="font-size:16px;">晶片設計圖
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</p>
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 +
<div class="imageimage">
 +
<div style="position:relative; width:48%;">
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<img src="https://static.igem.org/mediawiki/2016/6/6f/T-NYMU-Taipei-photo-real_floor.png" width="100%" /></div>
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<div style="position:relative; width:48%;">
 +
<img src="https://static.igem.org/mediawiki/2016/f/f3/T--NYMU-Taipei--photo-OFF-related-14725282_120300000683641886_996432644_o.png" width="100%" /></div>
 +
</div>
  
<h3 style="margin-top:30px; margin-bottom:10px;">2. The Second Layer – Motor</h3><br>
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<p style="font-size:16px;">The Arduino UNO main chip in our design was combined with two additional Appsduino chips, AppsBee Shield and Appsduino Shield. (The web site of Appsduino: http://appsduino.com/)</p>
  
 +
<h4 style="margin-top:30px; margin-bottom:10px;">2. The Second Layer – Motor</h4><br />
  
<h3 style="margin-top:30px; margin-bottom:10px;">3. Drawer – Entrance, Atomization Device</h3><br>
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<div class="imageimage">
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<div style="position:relative; width:48%;">
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<img src="https://static.igem.org/mediawiki/2016/c/c7/T-NYMU-Taipei-photo-roof.png" width="100%" /></div>
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<div style="position:relative; width:48%;">
 +
<p style="font-size:16px;">We use the string attached to a ULN2003 stepper motor driver to open and close the door.
 +
</p></div>
 +
</div>
  
 +
<h4 style="margin-top:30px; margin-bottom:10px;">3. Drawer – Entrance, Atomization Device</h4><br />
  
<h3 style="margin-top:30px; margin-bottom:10px;">Features</h3><br>
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<div class="imageimage">
 +
<div style="position:relative; width:48%;">
 +
<img src="https://static.igem.org/mediawiki/2016/a/a9/T-NYMU-Taipei-photo-floor_1.png" width="100%" /></div>
 +
<div style="position:relative; width:48%;">
 +
<p style="font-size:16px;">Since flying up is one of the behaviors of <i>B. dorsalis</i>, we set the <font color="#FF0000"><b>entrance</b></font> at the bottom of the trap to hinder the escape of trapped flies. The grower can pull out the drawer to refill the <font color="#FF0000"><b>methyl eugenol(a pheromone precursor)</b></font> to maintain the trap's attraction to male flies. The <font color="#FF0000"><b>atomization device</b></font> in the drawer sprays fungal spore solution to infect the trapped male flies.</p></div>
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</div>
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 +
</div>
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 +
<div class="fund">
 +
<br>
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Features</h3>
  
<h3 style="margin-top:30px; margin-bottom:10px;">1. Specificity - Methyl Eugenol</h3><br>
+
<h4 style="margin-top:30px; margin-bottom:10px;">1. Specificity - Methyl Eugenol</h4>
 
<p style="font-size:16px;">
 
<p style="font-size:16px;">
Methyl Eugenol is the pheromone precursor of oriental fruit fly. It will only appeal to male oriental fruit fly. The male oriental fruit fly will stop and fly away once they consume enough Methyl Eugenol.
+
<font color="#FF0000"><b>Methyl Eugenol</b></font> is the <font color="#FF0000"><b>pheromone precursor</b></font> of <i>B. dorsalis</i>. It only attracts male flies. The male flies will fly away once they have consumed enough Methyl Eugenol.
 
</p>
 
</p>
<h3 style="margin-top:30px; margin-bottom:10px;">2. Target main Problem – Female Oriental Fruit Fly</h3><br>
+
<h4 style="margin-top:30px; margin-bottom:10px;">2. Target main Problem – Female <i>B. dorsalis</i></h4>
 
<p style="font-size:16px;">
 
<p style="font-size:16px;">
A female oriental fruit fly poses more threat than male oriental fruit fly.  
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<font color="#FF0000"><b>Female <i>B. dorsalis</i></b></font> poses more threat than males.  
[找雲端硬碟裡面東方果實蠅女王說的話]
+
 
</p>
 
</p>
<h3 style="margin-top:30px; margin-bottom:10px;">3. Regulation – IR Counter, Trap, Phone App</h3><br>
+
<h4 style="margin-top:30px; margin-bottom:10px;">3. Regulation – IR Counter, Trap, Phone App</h4>
 
<p style="font-size:16px;">
 
<p style="font-size:16px;">
Automatically regulation of the frequency and door open duration depending on data from IR counter and phone APP.
+
<font color="#FF0000"><b>Automatic regulation</b></font> of the spray frequency and door opening duration depending on the data collected by the IR counter and phone APP.
 
</p>
 
</p>
<h3 style="margin-top:30px; margin-bottom:10px;">4. Eco-Friendly – Recycle </h3><br>
+
<h4 style="margin-top:30px; margin-bottom:10px;">4. Eco-Friendly – Recycle </h4>
 
<p style="font-size:16px;">
 
<p style="font-size:16px;">
Replacing the indissoluble plastic material (distributed by the government) with recyclable wood chips. It can reduce environmental pollution.
+
Replacing the indissoluble plastic material (distributed by the government) with <font color="#FF0000"><b>recyclable wood planks</b></font>, which can reduce environmental pollution.
 
</p>
 
</p>
  
<h3 style="margin-top:30px; margin-bottom:10px;">Mechanism</h3><br>
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</div>
  
<h3 style="margin-top:30px; margin-bottom:10px;">Actual Functional Video</h3><br>
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<div class="fund" align="center">
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Mechanism</h3><br />
 +
<img src="https://static.igem.org/mediawiki/2016/3/3d/T-NYMU-Taipei-photo-pipeline.jpg" width="60%" />
 +
</div>
  
 +
<div class="fund" align="center">
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Functionality Display Video</h3><br />
 +
<iframe width="560" height="315" src="https://www.youtube.com/embed/-1yPsO4_5a4" frameborder="0" allowfullscreen></iframe>
 +
</div>
  
 +
<div class="fund">
 +
<h2 style="margin-top:30px; margin-bottom:10px;">IR Counter & APP</h2><hr />
  
<h2 style="margin-top:30px; margin-bottom:10px;">IR Counter & APP</h2><hr>
 
 
<p style="font-size:16px;">
 
<p style="font-size:16px;">
(文字…..)
+
IR counter records and provides <font color="#FF0000"><b>real-time information</b></font> of the orchard : <font color="#FF0000"><b>pest group size and meteorological data</b></font> including temperature and humidity. With a smartphone app, the bait traps are able to inform the grower of these important information.
 
</p>
 
</p>
  
<h3 style="margin-top:30px; margin-bottom:10px;">
+
<div class="imageimage"><img src="https://static.igem.org/mediawiki/2016/6/69/T-NYMU-Taipei-photo-counter_in_field.jpg" width="100%" /></div>
Design
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</div>
</h3>
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 +
<div class="fund" align="center">
 +
<h3 style="margin-top:30px; margin-bottom:10px; height:20px;">Design</h3><br />
  
<h3 style="margin-top:30px; margin-bottom:10px;">
+
<img src="https://static.igem.org/mediawiki/2016/f/fe/T-NYMU-Taipei-photo-14741853_120300000623455056_66387865_n.jpg" width="80%" />
Functional Test
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</div>
</h3>
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<div class="fund">
 +
<h3 align="center" style="margin-top:30px; margin-bottom:10px;>Counter Microcontroller</h3>
 +
<img src="https://static.igem.org/mediawiki/2016/9/9e/14615770_902531213210754_6845015680555279181_o.jpg" width="80%" style="margin-left:10%;" />
 +
</div>
 +
<div class="fund" align="center">
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Functionality Display Video</h3><br />
 +
<iframe width="560" height="315" src="https://www.youtube.com/embed/ceFHgCC9w7o" frameborder="0" allowfullscreen></iframe>
 +
</div>
  
 +
<div class="fund">
  
 +
<h2 style="margin-top:30px; margin-bottom:10px;">Functional Test</h2><hr>
  
<h3 style="margin-top:30px; margin-bottom:10px;">
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<h3 style="margin-top:30px; margin-bottom:10px;">"Diameter of the tunnel that allows passage to one <i>B. dorsalis</i>" & IR counter</h3>
1. 洞口實驗
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</h3>
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<img src="https://static.igem.org/mediawiki/2016/c/c9/T-NYMU-Taipei-photo-Tunnel_experiment.JPG" width="90%" />
 +
 
 +
<p style="font-size:16px;">To <font color="#FF0000"><b>improve the accuracy</b></font> of counter, we tried to find the proper tunnel diameter allows only <font color="#FF0000"><b>one-by-one passage of <i>B. dorsalis</i></b></font>. We prepared different size of straws to connect two centrifuge tubes. One contained male <i>B. dorsalis</i>, and the other contained the bait, methyl eugenol. </p>
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 +
</div>
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 +
<div class="fund">
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<h3 style="margin-top:30px; margin-bottom:10px;">Result</h3>
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<p style="font-size:16px;">The results indicate that when the tunnel diameter is above <font color="#FF0000"><b>0.8 cm</b></font>, the flies can pass through.</p>
 +
 
 +
<div class="tablesatisfysp" style="overflow-x:auto;">
 +
<table border="1">
 +
 <tr>
 +
     <td>Diameter(cm)</td>
 +
     <td>2.00</td>
 +
     <td>1.75</td>
 +
     <td>1.50</td>
 +
     <td>1.00</td>
 +
     <td>0.80</td>
 +
     <td>0.75</td>
 +
     <td>0.60</td>
 +
 </tr>
 +
 <tr>
 +
     <td>outcome</td>
 +
     <td>O</td>
 +
     <td>O</td>
 +
     <td>O</td>
 +
     <td>O</td>
 +
     <td>O</td>
 +
     <td>Hardly</td>
 +
     <td>X</td>
 +
 </tr>
 +
</table>
 +
</div>
 +
 
 +
</div>
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 +
<div class="fund">
 +
 
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Twin Infection Rate experiments</h3>
  
 
<p style="font-size:16px;">
 
<p style="font-size:16px;">
(文字- 實驗目的, 結果)
+
"Infecting <i>B. dorsalis</i> with wildtype <i>M. anisopliae</i>" and "infecting female <i>B. dorsalis</i> by copulation with infected male <i>B. dorsalis</i>" experiments link to each other. This not only confirm the fact that <i>M. anisopliae</i> can infect and eventually kill <i>B. dorsalis</i>, but also a NEW way of biological control through the use of males as infection vectors to infect the females.
 +
<br>
 +
The concentration that is the most effective in killing <i>B. dorsalis</i> is <font color="#FF0000"><b>1.6 × 10<sup>6</sup></font></b> (conidia/ ml).
 
</p>
 
</p>
 +
<p style="font-size:16px;">
 +
The death rate of female <i>B. dorsalis</i> infected by <i>M. anisopliae</i> via copulation with infected males is <font color="#FF0000"><b>80%</b></font>.
  
<h3 style="margin-top:30px; margin-bottom:10px;">
+
<img src="https://static.igem.org/mediawiki/2016/c/c1/T-NYMU-Taipei-photo-Infection_experiment.JPG" width="100%" />
2. 實際計數效果
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<p style="font-size:16px;">The moment we change the day and night to the <i>B. dorsalis</i> during the infection rate experiment.</p>
</h3>
+
  
 +
<div class="tablesatisfysp" style="overflow-x:auto;">
 +
<table border="1">
 +
 <tr>
 +
     <td>Number</td>
 +
     <td>1</td>
 +
     <td>2</td>
 +
     <td>3</td>
 +
 </tr>
 +
 <tr>
 +
     <td>Death rate</td>
 +
     <td>100%</td>
 +
     <td>100%</td>
 +
     <td>40%</td>
 +
 </tr>
 +
</table>
 +
</div>
 +
</div>
 +
<div class="fund">
 +
 +
<h2 style="margin-top:30px; margin-bottom:10px;">Modeling Efficiency</h2><hr>
 +
 +
<p style="font-size:16px;">A population size model of <i>B. dorsalis</i> was constructed to simulate a comparison of <i>B. dorsalis </i>population size between an IOS-protected orchard and a normal orchard. The results show <font color="#FF0000"><b>a significant decrease of 35% in <i>B. dorsalis</i> population</b></font> in an IOS-protected orchard compared to one without IOS.
 +
<br>
 +
<a href="https://2016.igem.org/Team:NYMU-Taipei/Project-Model">Link to modeling</a>
 +
</p>
 +
</div>
 +
 +
<div class="fund">
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Population size without IOS</h3><hr>
 +
<video src="https://static.igem.org/mediawiki/2016/b/bc/T-NYMU-Taipei-model-movie.mp4" controls autoplay width="100%"></video><br>
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Population size with IOS</h3><hr>
 +
<video src="https://static.igem.org/mediawiki/2016/d/d4/T-NYMU-Taipei-photo-model1mb.mp4" controls autoplay width="100%"></video<br>
 +
</div>
 +
 +
<div class="fund">
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Expenditure Analysis</h3><hr>
 +
<p style="font-size:16px;">Based on our experimental deployment of counters and traps in an orchard one-hectare in size. The estimated total cost of IOS is listed below:</p>
 +
 +
<img src="https://static.igem.org/mediawiki/2016/d/d6/T--NYMU-Taipei--photo-media-analysis-%E5%9C%96%E7%89%871.png" width="70%">
 +
</div><br />
 +
 +
<div class="fund">
 +
<p style="font-size:16px;">It is estimated that orchard without any <i>B. dorsalis</i> treatment may incur lost up to 30% of fruit<sup>[1]</sup>. A few calculation was done based on the data from government, and it shows that the implementation of IOS can <font color="#FF0000"><b>reduce the agricultural loss by 25%</b></font>.  </p><br />
 +
 +
<img src="https://static.igem.org/mediawiki/2016/d/d0/T--NYMU-Taipei--photo-media-analysis-revenue_without_ios.png" width="70%" />
 +
<img src="https://static.igem.org/mediawiki/2016/6/60/T--NYMU-Taipei--photo-media-analysis-revenue_with_ios.png" width="70%" />
 +
<img src="https://static.igem.org/mediawiki/2016/8/81/T--NYMU-Taipei--photo-media-analysis-%E8%A1%A8%E6%A0%BC.png" width="60%" />
 +
<p style="font-size:16px;">The savings of fruit value is much greater than the cost of IOS, suggesting our IOS is really worthwhile to be implemented.</p>
 +
 +
 +
</div><br /><br />
 +
 +
<div class="fund">
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Reference:</h3><hr>
 +
 +
 +
<li style="list-style-type:decimal;"><a style="font-size:16px;" href="http://www.mdais.gov.tw/files/web_articles_files/mdares/2469/631.pdf">
 +
章加寶, 黃勝泉. "東方果實蠅寄生性天敵應用策略." 苗栗區農業專訊 44 (2008): 8-11.</a></li>
 +
 +
<li style="list-style-type:decimal;"><a  style="font-size:16px;"
 +
href="http://ir.tari.gov.tw:8080/bitstream/345210000/281/1/57_1_5.pdf">
 +
黃毓斌, et al. "東方果實蠅小面積區域防治模式研究 (二) 柑橘園之測試." 台灣農業研究 57.1 (2008): 63-73.</a></li>
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 +
 +
</div>
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 +
</div>
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 +
<div class="prototypeprototypesp"><!--smartphone-->
 +
 +
<div class="fund">
 +
<h1 style="margin-top:30px; margin-bottom:0px; height:65px; line-height: 36px;">Integrated Orchard Safeguard</h1></div>
 +
 +
<div class="fund">
 +
 +
<h2 style="margin-top:20px; margin-bottom:10px;">Overview</h2><hr />
 +
 +
<p style="font-size:16px;">Current method of applying entomogenous fungal pesticides is large-scaled spraying fungal spore solution. However, deployment of genetically engineered fungal pesticides using contemporary methods puts the local eco-system at risk of disruption by the residual fungi. Our project is divided into two main focuses to neutralize these risks. While our team members in wet lab aim to design a killing switch circuit to decrease the environmental risk of genetically engineered fungus from within the organism. Our prototype team attempt introduce an alternative to large-scaled spraying of genetically modified biopesticide by designing and building an Integrated Orchard Safeguard system centered around our prototype bait trap.</p>
 +
 +
<p style="font-size:16px;">In modern bait traps, the bait only attract <i>B. dorsalis</i>. However, it is female flies that is responsible for the species' high reproductiveness and destructiveness. This is why we designed the bait trap to attract, infect, and release male flies to allow M. anisopliae infection of female flies via copulation. The IR counter, another feature of our prototype, record and provide information including pest population size and meteorological data, such as temperature and humidity. Furthermore, farmers can monitor their orchards with a smartphone app that receives data from the IR counter.</p>
 +
 +
<p style="font-size:16px;">We present the Integrated Orchard Safeguard, a informative defense system that links our <font color="#FF0000"><b>bait trap, IR counter, and smartphone app.</b></font></p>
 +
 +
<img src="https://static.igem.org/mediawiki/2016/a/a1/T--NYMU-Taipei--photo-OFF-related-14632532_120300000685765068_1524025076_o.png" width="100%" />
 +
 +
</div>
 +
 +
<div class="fund">
 +
 +
<h2 style="margin-top:30px; margin-bottom:10px;">Bait Trap</h2><hr />
 +
 +
<p style="font-size:16px;">After the bait trap receives the population size of oriental fruit fly from the IR counter, it will then <font color="#FF0000"><b>automatically regulate the frequency </b></font>of the spray of fungal spore solution and the opening duration of the door.</p>
 +
 +
<img src="https://static.igem.org/mediawiki/2016/9/91/T--NYMU-Taipei--photo-OFF-related-14628131_120300000688268755_160847704_n.jpg" width="100%" />
 +
 +
</div>
 +
 +
<div class="fund">
 +
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Design</h3><br />
 +
<img src="https://static.igem.org/mediawiki/2016/a/a7/T-NYMU-Taipei-photo-trap_1.png" width="100%" />
 +
 +
<h4 style="margin-top:30px; margin-bottom:10px; line-height: 24px;">1. The First Layer – Microcontroller, Power</h4><br />
 +
 +
<img src="https://static.igem.org/mediawiki/2016/6/6f/T-NYMU-Taipei-photo-real_floor.png" width="90%" /><br />
 +
 +
<img src="https://static.igem.org/mediawiki/2016/f/f3/T--NYMU-Taipei--photo-OFF-related-14725282_120300000683641886_996432644_o.png" width="90%" />
 +
 +
<p style="font-size:16px;">The Arduino UNO in our design has combined with Appsduino's product, AppsBee Shield and Appsduino Shield. (The web site of Appsduino: http://appsduino.com/)</p>
 +
 +
<h4 style="margin-top:30px; margin-bottom:10px; line-height: 24px;">2. The Second Layer – Motor</h4><br />
 +
 +
<img src="https://static.igem.org/mediawiki/2016/c/c7/T-NYMU-Taipei-photo-roof.png" width="90%" />
 +
 +
<p style="font-size:16px;">We use the string attached to a ULN2003 stepper motor driver to open and close the door.
 +
</p>
 +
 +
<h4 style="margin-top:30px; margin-bottom:10px; line-height: 24px;">3. Drawer – Entrance, Atomization Device</h4><br />
 +
 +
<img src="https://static.igem.org/mediawiki/2016/a/a9/T-NYMU-Taipei-photo-floor_1.png" width="100%" />
 +
 +
<p style="font-size:16px;">Since flying up is one of the behaviors of <i>B. dorsalis</i>, we set the <font color="#FF0000"><b>entrance</b></font> at the bottom of the trap to hinder the escape of trapped flies. The grower can pull out the drawer to refill the <font color="#FF0000"><b>methyl eugenol(a pheromone precursor)</b></font> to maintain the trap's attraction to male flies. The <font color="#FF0000"><b>atomization device</b></font> in the drawer sprays fungal spore solution to infect the trapped male flies.</p>
 +
 +
</div>
 +
 +
<div class="fund">
 +
<br>
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Features</h3>
 +
 +
<h4 style="margin-top:30px; margin-bottom:10px; line-height: 24px;">1. Specificity - Methyl Eugenol</h4>
 +
<p style="font-size:16px;"><font color="#FF0000"><b>Methyl Eugenol</b></font> is the <font color="#FF0000"><b>pheromone precursor</b></font> of <i>B. dorsalis</i>. It only attracts male flies. The male flies will fly away once they  have consumed enough Methyl Eugenol.</p>
 +
 +
<h4 style="margin-top:30px; margin-bottom:10px; line-height: 24px;">2. Target main Problem – Female <i>B. dorsalis</i></h4>
 +
<p style="font-size:16px;"><font color="#FF0000"><b>female <i>B. dorsalis</i></b></font> poses more threat than males. </p>
 +
 +
<h4 style="margin-top:30px; margin-bottom:10px; line-height: 24px;">3. Regulation – IR Counter, Trap, Phone App</h4>
 +
<p style="font-size:16px;"><font color="#FF0000"><b>Automatically regulation</b></font> of the spray frequency and door open duration depends on the data collected by the IR counter and phone APP.</p>
 +
 +
<h4 style="margin-top:30px; margin-bottom:10px; line-height: 24px;">4. Eco-Friendly – Recycle </h4>
 +
<p style="font-size:16px;">Replacing the indissoluble plastic material (distributed by the government) with <font color="#FF0000"><b>recyclable wood chips</b></font>, which can reduce environmental pollution.</p>
 +
 +
</div>
 +
 +
<div class="fund" align="center">
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Mechanism</h3><br />
 +
<img src="https://static.igem.org/mediawiki/2016/3/3d/T-NYMU-Taipei-photo-pipeline.jpg" width="80%" />
 +
</div>
 +
 +
<div class="fund" align="center">
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Functionality Display Video</h3><br />
 +
<iframe width="100%" src="https://www.youtube.com/embed/-1yPsO4_5a4" frameborder="0" allowfullscreen ></iframe>
 +
</div>
 +
 +
<div class="fund">
 +
<h2 style="margin-top:30px; margin-bottom:10px;">IR Counter & APP</h2><hr />
  
 
<p style="font-size:16px;">
 
<p style="font-size:16px;">
(文字- 實驗目的, 結果)
+
IR counter records and provides <font color="#FF0000"><b>real-time information</b></font> of the orchard : <font color="#FF0000"><b>pest group size, meteorological data</b></font> including temperature and humidity. With a smartphone app, the bait traps are able to inform the grower of these important information.
 
</p>
 
</p>
  
<h3 style="margin-top:30px; margin-bottom:10px;">
+
<img src="https://static.igem.org/mediawiki/2016/6/69/T-NYMU-Taipei-photo-counter_in_field.jpg" width="100%" />
Mechanism
+
</h3>
+
  
 +
</div>
  
<h3 style="margin-top:30px; margin-bottom:10px;">
+
<div class="fund" align="center">
Actual Functional Video
+
<h3 style="margin-top:30px; margin-bottom:10px; height:20px;">Design</h3><br />
</h3>
+
<img src="https://static.igem.org/mediawiki/2016/f/fe/T-NYMU-Taipei-photo-14741853_120300000623455056_66387865_n.jpg" width="80%" />
 +
</div>
  
<h2 style="margin-top:30px; margin-bottom:10px;">(尚未想好名字)</h2><hr>
+
<div class="fund">
 +
<h3 align="center" style="margin-top:30px; margin-bottom:10px;>Counter Microcontroller</h3>
 +
<img src="https://static.igem.org/mediawiki/2016/9/9e/14615770_902531213210754_6845015680555279181_o.jpg" width="80%" style="margin-left:10%;" />
 +
</div>
 +
 
 +
<div class="fund">
 +
 
 +
<h2 style="margin-top:30px; margin-bottom:10px;">Functional Test</h2><hr>
 +
 
 +
<h3 style="margin-top:30px; margin-bottom:10px;">"Diameter of the tunnel that allows passage to one <i>B. dorsalis</i>" & IR counter</h3>
 +
 
 +
<img src="https://static.igem.org/mediawiki/2016/c/c9/T-NYMU-Taipei-photo-Tunnel_experiment.JPG" width="90%" />
 +
 
 +
<p style="font-size:16px;">To <font color="#FF0000"><b>improve the accuracy</b></font> of counter, we tried to find the proper tunnel diameter allows only <font color="#FF0000"><b>one-by-one passage of <i>B. dorsalis</i></b></font>. We prepared different size of straws to connect two centrifuge tubes. One contained male <i>B. dorsalis</i>, and the other contained the bait, methyl eugenol. </p>
 +
 
 +
</div>
 +
 
 +
<div class="fund">
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Result</h3>
 +
<p style="font-size:16px;">The results indicate that when the tunnel diameter is above <font color="#FF0000"><b>0.8 cm</b></font>, the flies can pass through.</p>
 +
 
 +
<div class="tablesatisfysp" style="overflow-x:auto;">
 +
<table border="1">
 +
 <tr>
 +
     <td>Diameter(cm)</td>
 +
     <td>2.00</td>
 +
     <td>1.75</td>
 +
     <td>1.50</td>
 +
     <td>1.00</td>
 +
     <td>0.80</td>
 +
     <td>0.75</td>
 +
     <td>0.60</td>
 +
 </tr>
 +
 <tr>
 +
     <td>outcome</td>
 +
     <td>O</td>
 +
     <td>O</td>
 +
     <td>O</td>
 +
     <td>O</td>
 +
     <td>O</td>
 +
     <td>Hardly</td>
 +
     <td>X</td>
 +
 </tr>
 +
</table>
 +
</div>
 +
 
 +
</div>
 +
 
 +
<div class="fund">
 +
 
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Twin Infection Rate experiments</h3>
  
 
<p style="font-size:16px;">
 
<p style="font-size:16px;">
(文字 – 家祥編寫中…
+
"Infecting <i>B. dorsalis</i> with non-designed <i>M. anisopliae</i>" and "infecting female <i>B. dorsalis</i> by copulation with infected male <i>B. dorsalis</i>" experiments link to each other; they not only confirm the fact that <i>M. anisopliae</i> successfully invaded and eventually caused the death of <i>B. dorsalis</i> also show the NEW way of bio-control through the interaction from the male to the FEMALE.
分析實際農地中配置方法 by 承勳model的結果, 成本, Z-bee收訊範圍…)
+
<br>
 +
The concentration that efficiently and sufficiently causing the death of <i>B. dorsalis</i> is <font color="#FF0000"><b>1.6 × 10<sup>6</sup></font></b> (conidia/ ml).
 
</p>
 
</p>
 +
<p style="font-size:16px;">
 +
The death rate of female <i>B. dorsalis</i> infected by <i>M. anisopliae</i> via copulation with infected males is <font color="#FF0000"><b>80%</b></font>.
  
 +
<img src="https://static.igem.org/mediawiki/2016/c/c1/T-NYMU-Taipei-photo-Infection_experiment.JPG" width="100%" />
 +
<p style="font-size:16px;">The moment we change the day and night to the <i>B. dorsalis</i> during the infection rate experiment.</p>
  
 +
<div class="tablesatisfysp" style="overflow-x:auto;">
 +
<table border="1">
 +
 <tr>
 +
     <td>Number</td>
 +
     <td>1</td>
 +
     <td>2</td>
 +
     <td>3</td>
 +
 </tr>
 +
 <tr>
 +
     <td>Death rate</td>
 +
     <td>100%</td>
 +
     <td>100%</td>
 +
     <td>40%</td>
 +
 </tr>
 +
</table>
 +
</div>
  
 +
 +
<h2 style="margin-top:30px; margin-bottom:10px;">Efficiency Model</h2><hr>
 +
 +
<p style="font-size:16px;">
 +
A population size model of <i>B. dorsalis</i> was constructed to simulate a comparison of <i>B. dorsalis</i> population size between an IOS-protected orchard and a normal orchard. The results show <font color="#FF0000"><b>a significant decrease of 35% in <i>B. dorsalis</i> population</b></font> in an IOS-protected orchard compared to one without IOS.
 +
<br>
 +
<a href="https://2016.igem.org/Team:NYMU-Taipei/Project-Model">Link to modeling</a>
 +
</p>
 +
</div>
 +
 +
<div class="fund">
 +
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Population size without IOS</h3><br />
 +
<video src="https://static.igem.org/mediawiki/2016/b/bc/T-NYMU-Taipei-model-movie.mp4" controls autoplay width="100%">
 +
</video><br>
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Population size with IOS</h3><br />
 +
<video src="https://static.igem.org/mediawiki/2016/d/d4/T-NYMU-Taipei-photo-model1mb.mp4" controls autoplay width="100%">
 +
</video><br>
 +
</div>
 +
 +
<div class="fund">
 +
 +
<h2 style="margin-top:30px; margin-bottom:10px;">Expenditure Analysis</h2><hr>
 +
 +
<p style="font-size:16px;">Based on our experimental deployment of counters and traps in an orchard one-hectare in size. The estimated total cost of IOS is listed below:</p>
 +
 +
<div class="tablesatisfysp" style="overflow-x:auto;">
 +
<table cellspacing="0" cellpadding="0" border="1">
 +
    <tbody>
 +
        <tr>
 +
            <td width="230" valign="top">
 +
                <p style="font-size:16px;"><strong> </strong></p>
 +
            </td>
 +
            <td width="230" valign="top">
 +
                <p style="font-size:16px;"><strong>amount</strong></p>
 +
            </td>
 +
            <td width="231" valign="top">
 +
                <p style="font-size:16px;"><strong>cost (USD)</strong></p>
 +
            </td>
 +
        </tr>
 +
        <tr>
 +
            <td width="230" valign="top">
 +
                <p style="font-size:16px;"><strong>trap</strong></p>
 +
            </td>
 +
            <td width="230" valign="top">
 +
                <p style="font-size:16px;">4</p>
 +
            </td>
 +
            <td width="231" valign="top">
 +
                <p style="font-size:16px;">60</p>
 +
            </td>
 +
        </tr>
 +
        <tr>
 +
            <td width="230" valign="top">
 +
                <p style="font-size:16px;"><strong>counter</strong></p>
 +
            </td>
 +
            <td width="230" valign="top">
 +
                <p style="font-size:16px;">3</p>
 +
            </td>
 +
            <td width="231" valign="top">
 +
                <p style="font-size:16px;">30</p>
 +
            </td>
 +
        </tr>
 +
        <tr>
 +
            <td width="230" valign="top">
 +
                <p style="font-size:16px;"><strong>methyl eugenol</strong></p>
 +
            </td>
 +
            <td width="230" valign="top">
 +
                <p style="font-size:16px;">100 mL</p>
 +
            </td>
 +
            <td width="231" valign="top">
 +
                <p style="font-size:16px;"> 50</p>
 +
            </td>
 +
        </tr>
 +
        <tr>
 +
            <td colspan="2" width="461" valign="top">
 +
                <p align="center" style="font-size:16px;"><strong>total cost</strong></p>
 +
            </td>
 +
            <td width="231" valign="top">
 +
                <p style="font-size:16px;">90</p>
 +
            </td>
 +
        </tr>
 +
    </tbody>
 +
</table>
 +
</div>
 +
 +
</div>
 +
 +
<div class="fund">
 +
 +
<p style="font-size:16px;">It is estimated that orchard without any <i>B. dorsalis</i> treatment may incur lost up to 30% of fruit(1). A few calculation was done based on the data from government, and it shows that the saving of fruit value due to our IOS is much greater than the cost of IOS, suggesting our IOS is really worthwhile to be implemented.</p>
 +
 +
<div align="center">
 +
<img src="https://static.igem.org/mediawiki/2016/d/d3/T-NYMU-Taipei-photo-protype_image005.png" width="100%" /></div>
 +
 +
<p style="font-size:16px;"><font color="#FF0000"><b>(cost of IOS only in low ratio compared to the total profit)</b></font></p><br />
 +
 +
<div align="center">
 +
<img src="https://static.igem.org/mediawiki/2016/0/00/T-NYMU-Taipei-photo-protype_image007.png" width="100%" /></div>
 +
 +
<p style="font-size:16px;"><font color="#FF0000"><b>(figure showing the great savings from IOS)</b></font></p><br />
 +
 +
<h3 style="margin-top:30px; margin-bottom:10px;">Reference:</h3><hr />
 +
 +
<li style="list-style-type:decimal;"><a style="font-size:16px;" href="http://www.mdais.gov.tw/files/web_articles_files/mdares/2469/631.pdf">
 +
章加寶, 黃勝泉. "東方果實蠅寄生性天敵應用策略." 苗栗區農業專訊 44 (2008): 8-11.</a></li>
 +
 +
<li style="list-style-type:decimal;"><a  style="font-size:16px;"
 +
href="http://ir.tari.gov.tw:8080/bitstream/345210000/281/1/57_1_5.pdf">
 +
黃毓斌, et al. "東方果實蠅小面積區域防治模式研究 (二) 柑橘園之測試." 台灣農業研究 57.1 (2008): 63-73.</a></li>
 +
 +
</div>
  
 
</div>
 
</div>

Latest revision as of 00:58, 20 October 2016

Integrated Orchard Safeguard

Overview


Current method of applying entomogenous fungal pesticides is large-scaled spraying fungal spore solution. However, deployment of genetically engineered fungal pesticides using contemporary methods puts the local eco-system at risk of disruption by the residual fungi.

Our project is divided into two main focuses to neutralize these risks. While our team members in wet lab aim to design a killing switch circuit to decrease the environmental risk of genetically engineered fungus from within the organism. Our prototype team attempt introduce an alternative to large-scaled spraying of genetically modified biopesticide by designing and building an Integrated Orchard Safeguard system centered around our prototype bait trap.

In modern bait traps, the bait only attract male B. dorsalis. However, it is the females that are responsible for the species' high reproductiveness and destructiveness. This is why we designed the bait trap to attract, infect, and release male flies to allow M. anisopliae infection to spread to the females via copulation with infected males. The IR counter, another feature of our prototype, record and provide information including pest population size and meteorological data, such as temperature and humidity. Furthermore, farmers can monitor their orchards with our smartphone app that receives data from the IR counter.

We present the Integrated Orchard Safeguard, an information network system that connects our bait trap, IR counter and smartphone app together.

New Generation Bait Trap


After the bait trap receives the population size information of B. dorsalis from the IR counter, it will then automatically regulate the frequency of the spray of fungal spore solution and the opening duration of the door.

Design


1. The First Layer – Microcontroller, Power


The Arduino UNO main chip in our design was combined with two additional Appsduino chips, AppsBee Shield and Appsduino Shield. (The web site of Appsduino: http://appsduino.com/)

2. The Second Layer – Motor


We use the string attached to a ULN2003 stepper motor driver to open and close the door.

3. Drawer – Entrance, Atomization Device


Since flying up is one of the behaviors of B. dorsalis, we set the entrance at the bottom of the trap to hinder the escape of trapped flies. The grower can pull out the drawer to refill the methyl eugenol(a pheromone precursor) to maintain the trap's attraction to male flies. The atomization device in the drawer sprays fungal spore solution to infect the trapped male flies.


Features

1. Specificity - Methyl Eugenol

Methyl Eugenol is the pheromone precursor of B. dorsalis. It only attracts male flies. The male flies will fly away once they have consumed enough Methyl Eugenol.

2. Target main Problem – Female B. dorsalis

Female B. dorsalis poses more threat than males.

3. Regulation – IR Counter, Trap, Phone App

Automatic regulation of the spray frequency and door opening duration depending on the data collected by the IR counter and phone APP.

4. Eco-Friendly – Recycle

Replacing the indissoluble plastic material (distributed by the government) with recyclable wood planks, which can reduce environmental pollution.

Mechanism


Functionality Display Video


IR Counter & APP


IR counter records and provides real-time information of the orchard : pest group size and meteorological data including temperature and humidity. With a smartphone app, the bait traps are able to inform the grower of these important information.

Design


Functionality Display Video


Functional Test


"Diameter of the tunnel that allows passage to one B. dorsalis" & IR counter

To improve the accuracy of counter, we tried to find the proper tunnel diameter allows only one-by-one passage of B. dorsalis. We prepared different size of straws to connect two centrifuge tubes. One contained male B. dorsalis, and the other contained the bait, methyl eugenol.

Result

The results indicate that when the tunnel diameter is above 0.8 cm, the flies can pass through.

                                       
Diameter(cm)2.001.751.501.000.800.750.60
outcomeOOOOOHardlyX

Twin Infection Rate experiments

"Infecting B. dorsalis with wildtype M. anisopliae" and "infecting female B. dorsalis by copulation with infected male B. dorsalis" experiments link to each other. This not only confirm the fact that M. anisopliae can infect and eventually kill B. dorsalis, but also a NEW way of biological control through the use of males as infection vectors to infect the females.
The concentration that is the most effective in killing B. dorsalis is 1.6 × 106 (conidia/ ml).

The death rate of female B. dorsalis infected by M. anisopliae via copulation with infected males is 80%.

The moment we change the day and night to the B. dorsalis during the infection rate experiment.

                       
Number123
Death rate100%100%40%

Modeling Efficiency


A population size model of B. dorsalis was constructed to simulate a comparison of B. dorsalis population size between an IOS-protected orchard and a normal orchard. The results show a significant decrease of 35% in B. dorsalis population in an IOS-protected orchard compared to one without IOS.
Link to modeling

Population size without IOS



Population size with IOS


Expenditure Analysis


Based on our experimental deployment of counters and traps in an orchard one-hectare in size. The estimated total cost of IOS is listed below:


It is estimated that orchard without any B. dorsalis treatment may incur lost up to 30% of fruit[1]. A few calculation was done based on the data from government, and it shows that the implementation of IOS can reduce the agricultural loss by 25%.


The savings of fruit value is much greater than the cost of IOS, suggesting our IOS is really worthwhile to be implemented.



Integrated Orchard Safeguard

Overview


Current method of applying entomogenous fungal pesticides is large-scaled spraying fungal spore solution. However, deployment of genetically engineered fungal pesticides using contemporary methods puts the local eco-system at risk of disruption by the residual fungi. Our project is divided into two main focuses to neutralize these risks. While our team members in wet lab aim to design a killing switch circuit to decrease the environmental risk of genetically engineered fungus from within the organism. Our prototype team attempt introduce an alternative to large-scaled spraying of genetically modified biopesticide by designing and building an Integrated Orchard Safeguard system centered around our prototype bait trap.

In modern bait traps, the bait only attract B. dorsalis. However, it is female flies that is responsible for the species' high reproductiveness and destructiveness. This is why we designed the bait trap to attract, infect, and release male flies to allow M. anisopliae infection of female flies via copulation. The IR counter, another feature of our prototype, record and provide information including pest population size and meteorological data, such as temperature and humidity. Furthermore, farmers can monitor their orchards with a smartphone app that receives data from the IR counter.

We present the Integrated Orchard Safeguard, a informative defense system that links our bait trap, IR counter, and smartphone app.

Bait Trap


After the bait trap receives the population size of oriental fruit fly from the IR counter, it will then automatically regulate the frequency of the spray of fungal spore solution and the opening duration of the door.

Design


1. The First Layer – Microcontroller, Power



The Arduino UNO in our design has combined with Appsduino's product, AppsBee Shield and Appsduino Shield. (The web site of Appsduino: http://appsduino.com/)

2. The Second Layer – Motor


We use the string attached to a ULN2003 stepper motor driver to open and close the door.

3. Drawer – Entrance, Atomization Device


Since flying up is one of the behaviors of B. dorsalis, we set the entrance at the bottom of the trap to hinder the escape of trapped flies. The grower can pull out the drawer to refill the methyl eugenol(a pheromone precursor) to maintain the trap's attraction to male flies. The atomization device in the drawer sprays fungal spore solution to infect the trapped male flies.


Features

1. Specificity - Methyl Eugenol

Methyl Eugenol is the pheromone precursor of B. dorsalis. It only attracts male flies. The male flies will fly away once they have consumed enough Methyl Eugenol.

2. Target main Problem – Female B. dorsalis

female B. dorsalis poses more threat than males.

3. Regulation – IR Counter, Trap, Phone App

Automatically regulation of the spray frequency and door open duration depends on the data collected by the IR counter and phone APP.

4. Eco-Friendly – Recycle

Replacing the indissoluble plastic material (distributed by the government) with recyclable wood chips, which can reduce environmental pollution.

Mechanism


Functionality Display Video


IR Counter & APP


IR counter records and provides real-time information of the orchard : pest group size, meteorological data including temperature and humidity. With a smartphone app, the bait traps are able to inform the grower of these important information.

Design


Functional Test


"Diameter of the tunnel that allows passage to one B. dorsalis" & IR counter

To improve the accuracy of counter, we tried to find the proper tunnel diameter allows only one-by-one passage of B. dorsalis. We prepared different size of straws to connect two centrifuge tubes. One contained male B. dorsalis, and the other contained the bait, methyl eugenol.

Result

The results indicate that when the tunnel diameter is above 0.8 cm, the flies can pass through.

                                       
Diameter(cm)2.001.751.501.000.800.750.60
outcomeOOOOOHardlyX

Twin Infection Rate experiments

"Infecting B. dorsalis with non-designed M. anisopliae" and "infecting female B. dorsalis by copulation with infected male B. dorsalis" experiments link to each other; they not only confirm the fact that M. anisopliae successfully invaded and eventually caused the death of B. dorsalis also show the NEW way of bio-control through the interaction from the male to the FEMALE.
The concentration that efficiently and sufficiently causing the death of B. dorsalis is 1.6 × 106 (conidia/ ml).

The death rate of female B. dorsalis infected by M. anisopliae via copulation with infected males is 80%.

The moment we change the day and night to the B. dorsalis during the infection rate experiment.

                       
Number123
Death rate100%100%40%

Efficiency Model


A population size model of B. dorsalis was constructed to simulate a comparison of B. dorsalis population size between an IOS-protected orchard and a normal orchard. The results show a significant decrease of 35% in B. dorsalis population in an IOS-protected orchard compared to one without IOS.
Link to modeling

Population size without IOS



Population size with IOS



Expenditure Analysis


Based on our experimental deployment of counters and traps in an orchard one-hectare in size. The estimated total cost of IOS is listed below:

amount

cost (USD)

trap

4

60

counter

3

30

methyl eugenol

100 mL

50

total cost

90

It is estimated that orchard without any B. dorsalis treatment may incur lost up to 30% of fruit(1). A few calculation was done based on the data from government, and it shows that the saving of fruit value due to our IOS is much greater than the cost of IOS, suggesting our IOS is really worthwhile to be implemented.

(cost of IOS only in low ratio compared to the total profit)


(figure showing the great savings from IOS)


Reference:


  • 章加寶, 黃勝泉. "東方果實蠅寄生性天敵應用策略." 苗栗區農業專訊 44 (2008): 8-11.
  • 黃毓斌, et al. "東方果實蠅小面積區域防治模式研究 (二) 柑橘園之測試." 台灣農業研究 57.1 (2008): 63-73.