Difference between revisions of "Team:Dundee Schools"

 
Line 1: Line 1:
−
{{Dundee_Schools}}
 
 
<html>
 
<html>
  
−
<div class="column full_size" >
+
<style>
−
<img src="http://placehold.it/800x300/d3d3d3/f2f2f2">
+
−
</div>
+
  
−
<div class="column full_size" >
+
/********************************* DEFAULT WIKI SETTINGS  ********************************/
−
<h2> Project Description </h2>
+
−
  <p>Every month running from February 2016 our team attended monthly meetings to discuss our project and brainstorm ideas, allowing us to talk about what we would like to work on throughout the summer. During these meetings we all came up with various ideas and eventually managed to narrow it down to the idea of targeting water-borne bacterial infections affecting developing countries. <br></br>
+
−
      Two of the main bacterial infections caught in these countries are shigellosis and cholera; shigellosis is an infection caused by the bacterium <em>Shigella</em> and cholera by <em>Vibrio cholerae</em>. Both are usually caught by ingesting water or food contaminated with the respective bacteria and both conditions also have similar symptoms; 163 million cases of Shigellosis are recorded annually in third-world countries, 1 million of which proving fatal. In addition, Cholera causes around 100 000 deaths in these countries per year.<br></br>
+
−
      We have decided to combat these infections by using RNA interference; this will hopefully be a cheaper, faster and more accessible solution than current cures. Since beginning our project full-time in June, the dry team have contacted various individuals and charities to get a range of opinions on our proposed method and have started developing the wiki; meanwhile, the wet team have begun work in the lab.</p>
+
−
</div>
+
  
−
<div class="column half_size" >
+
#sideMenu, #top_title {display:none;}
−
<h5>Before you start: </h5>
+
#content { padding:0px; width:1000px; margin-top:-7px; margin-left:0px;}
−
<p> Please read the following pages:</p>
+
body {background-color:#bcc8dd; }
−
<ul>
+
#bodyContent h1, #bodyContent h2, #bodyContent h3, #bodyContent h4, #bodyContent h5 { margin-bottom: 0px; }
−
<li>  <a href="https://2016.igem.org/Requirements">Requirements page </a> </li>
+
−
<li> <a href="https://2016.igem.org/Wiki_How-To">Wiki Requirements page</a></li>
+
−
<li> <a href="https://2016.igem.org/Resources/Template_Documentation"> Template Documentation </a></li>
+
−
</ul>
+
−
</div>
+
  
−
<div class="column half_size" >
+
/********************************* MENU ********************************/
−
<div class="highlight">
+
/* Wrapper for the menu */
−
<h5> Styling your wiki </h5>
+
.menu_wrapper {
−
<p>You may style this page as you like or you can simply leave the style as it is. You can easily keep the styling and edit the content of these default wiki pages with your project information and completely fulfill the requirement to document your project.</p>
+
width:150px;
−
<p>While you may not win Best Wiki with this styling, your team is still eligible for all other awards. This default wiki meets the requirements, it improves navigability and ease of use for visitors, and you should not feel it is necessary to style beyond what has been provided.</p>
+
height:100vh;
−
</div>
+
position:fixed;
−
</div>
+
padding:0px;
 +
float:left;
 +
background-color:#a8bce1;
 +
text-align:left;
 +
}
  
−
<div class="column full_size" >
+
/* styling for the menu items */
−
<h5> Wiki template information </h5>
+
.menu_item {
−
<p>We have created these wiki template pages to help you get started and to help you think about how your team will be evaluated. You can find a list of all the pages tied to awards here at the <a href="https://2016.igem.org/Judging/Pages_for_Awards/Instructions">Pages for awards</a> link. You must edit these pages to be evaluated for medals and awards, but ultimately the design, layout, style and all other elements of your team wiki is up to you!</p>
+
width:100%;
 +
margin:-2px 0px 0px -20px;
 +
padding: 10px 10px; 
 +
border-bottom: 1px solid white;
 +
font-weight:bold;
 +
color:white;
 +
cursor: pointer;
 +
}
  
−
</div>
+
/* when hovering on a menu item */
 +
.menu_item:hover {
 +
color:#000000;
 +
background-color: #c4d1e9;
 +
}
  
 +
/* decoration icon for the menu buttons*/
 +
.icon {
 +
float:right; 
 +
font-size:16px;
 +
font-weight:bold;
 +
}
 +
 +
/* this is the icon for when the content is collapsed */
 +
.plus::before {
 +
content: "+";
 +
}
 +
/* this is the icon for when the content is expanded */
 +
.less::before {
 +
content: "–";
 +
}
  
 +
/* styling for the ul that creates the buttons */
 +
ul.menu_items {
 +
width:100%;
 +
margin-left:0px;
 +
padding:0px;
 +
list-style: none;
 +
}
  
 +
/* styling for the li that are the menu items */
 +
.menu_items li {
 +
width:90%;
 +
margin-top:-2px;
 +
padding: 15px 0px 15px 15px ;
 +
display:block;
 +
border-bottom: 1px solid #d3d3d3; 
 +
text-align:left;
 +
font-weight:bold;
 +
text-decoration:none;
 +
color:white;
 +
list-style-type:none;
 +
cursor:pointer;
 +
-webkit-transition: all 0.4s ease;
 +
-moz-transition: all 0.4s ease;
 +
-ms-transition: all 0.4s ease;
 +
-o-transition: all 0.4s ease; transition: all 0.4s ease; 
 +
}
  
−
<div class="column half_size" >
+
.menu_item a {
−
<h5> Editing your wiki </h5>
+
width: 100%;
−
<p>On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world! </p>
+
margin-left: -20px;
−
<p> <a href="https://2016.igem.org/wiki/index.php?title=Team:Example&action=edit"> Click here to edit this page! </a></p>
+
padding: 11px 90px 12px 20px;
 +
text-decoration: none;
 +
color:white;
 +
}
  
−
</div>
+
/* When hovering on a menu item */
 +
.menu_items li:hover {
 +
background-color:#a8bce1;
 +
color: #000000;
 +
}
  
 +
/* styling for the submenus */
 +
.submenu {
 +
width:100%;
 +
display: none; 
 +
font-weight:bold;
 +
cursor:pointer;
  
−
<div class="column half_size" >
+
}
−
<h5>Tips</h5>
+
−
<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
+
−
<ul>
+
−
<li>State your accomplishments! Tell people what you have achieved from the start. </li>
+
−
<li>Be clear about what you are doing and how you plan to do this.</li>
+
−
<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
+
−
<li>Make sure information is easy to find; nothing should be more than 3 clicks away.  </li>
+
−
<li>Avoid using very small fonts and low contrast colors; information should be easy to read.  </li>
+
−
<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="https://2016.igem.org/Calendar">iGEM 2016 calendar</a> </li>
+
−
<li>Have lots of fun! </li>
+
−
</ul>
+
−
</div>
+
  
 +
/* moving the margin for the submenu ul list */
 +
ul.submenu {
 +
width: 100%;
 +
margin: 10px 0px -11px 0px;
 +
list-style: none;
 +
}
  
−
<div class="column half_size" >
+
/*styling for the submenu buttons */
−
<h5>Inspiration</h5>
+
.submenu li {
−
<p> You can also view other team wikis for inspiration! Here are some examples:</p>
+
width: 100%;
−
<ul>
+
margin-left: 10px;
−
<li> <a href="https://2014.igem.org/Team:SDU-Denmark/"> 2014 SDU Denmark </a> </li>
+
margin-bottom: 0px;
−
<li> <a href="https://2014.igem.org/Team:Aalto-Helsinki">2014 Aalto-Helsinki</a> </li>
+
}
−
<li> <a href="https://2014.igem.org/Team:LMU-Munich">2014 LMU-Munich</a> </li>
+
−
<li> <a href="https://2014.igem.org/Team:Michigan"> 2014 Michigan</a></li>
+
−
<li> <a href="https://2014.igem.org/Team:ITESM-Guadalajara">2014 ITESM-Guadalajara </a></li>
+
−
<li> <a href="https://2014.igem.org/Team:SCU-China"> 2014 SCU-China </a></li>
+
−
</ul>
+
−
</div>
+
  
−
<div class="column half_size" >
 
−
<h5> Uploading pictures and files </h5>
 
−
<p> You can upload your pictures and files to the iGEM 2016 server. Remember to keep all your pictures and files within your team's namespace or at least include your team's name in the file name. <br />
 
−
When you upload, set the "Destination Filename" to <code>Team:YourOfficialTeamName/NameOfFile.jpg</code>. (If you don't do this, someone else might upload a different file with the same "Destination Filename", and your file would be erased!)</p>
 
  
 +
/* hover state for the submenu buttons */
 +
.submenu li a {
 +
width: 100%;
 +
padding: 5px 10px;
 +
display: inline-block;
 +
border-bottom: 1px solid white;
 +
background-color:#c1cfe8;
 +
text-decoration:none;
 +
color:white;
 +
}
  
−
<div class="button_click"  onClick=" parent.location= 'https://2016.igem.org/Special:Upload '">   
+
 
−
UPLOAD FILES
+
 
−
</div>
+
.submenu li a:hover  {
 +
background-color:#a3b6d7;
 +
color:black;
 +
}
 +
 
 +
 
 +
/* When the screen is smaller than 680px, the menu has the option to hide/show - this button controls that */
 +
.collapsable_menu_control {
 +
width:100%;
 +
padding: 15px 0px;
 +
display:none;
 +
background-color:#000000;
 +
text-align:center; 
 +
font-weight:bold;
 +
color:#72c9b6;
 +
cursor:pointer;
 +
-webkit-transition: all 0.4s ease;
 +
-moz-transition: all 0.4s ease;
 +
-ms-transition: all 0.4s ease;
 +
-o-transition: all 0.4s ease;
 +
transition: all 0.4s ease;
 +
}
 +
 
 +
/* when hovering on that button */
 +
.collapsable_menu_control:hover {
 +
background-color: #72c9b6;
 +
color:#000000; 
 +
}
 +
 
 +
/********************************* CONTENT OF THE PAGE ********************************/
 +
 
 +
/* Wrapper for the content */
 +
.content_wrapper {
 +
width: 85%;
 +
margin-left:150px;
 +
padding:10px 0px;
 +
float:left;
 +
background-color:white;
 +
}
 +
 
 +
/*LAYOUT */
 +
.column  {
 +
padding: 10px 0px;
 +
float:left;
 +
background-color:white;
 +
}
 +
 
 +
.full_size {
 +
width:100%;
 +
}
 +
 
 +
.full_size img {
 +
padding: 10px 15px;
 +
width:96.5%;
 +
}
 +
 
 +
.half_size {
 +
width: 50%;
 +
}
 +
.half_size img {
 +
padding: 10px 15px;
 +
width: 93%;
 +
}
 +
 
 +
 
 +
.clear {
 +
clear:both;
 +
}
 +
 
 +
.highlight {
 +
width: 90%;
 +
margin: auto;
 +
padding: 15px 5px;
 +
background-color: #f2f2f2;
 +
}
 +
 
 +
 
 +
/*STYLING */
 +
 
 +
/* styling for the titles */
 +
.content_wrapper h1, .content_wrapper h2 {
 +
padding:5px 15px;
 +
border-bottom:0px;
 +
color:#72c9b6;
 +
 
 +
}
 +
.content_wrapper h3, .content_wrapper h4, .content_wrapper h5, .content_wrapper h6 {
 +
padding:5px 15px;
 +
border-bottom:0px;
 +
color: #000000; 
 +
}
 +
 
 +
 
 +
/* font and text */
 +
.content_wrapper p {
 +
padding:0px 15px;
 +
font-size: 13px;
 +
font-family:Tahoma, Geneva, sans-serif;
 +
}
 +
 
 +
/* Links */
 +
.content_wrapper a {
 +
font-weight: bold;
 +
text-decoration: underline;
 +
text-decoration-color:#72c9b6;
 +
color: #72c9b6;
 +
-webkit-transition: all 0.4s ease;
 +
-moz-transition: all 0.4s ease;
 +
-ms-transition: all 0.4s ease;
 +
-o-transition: all 0.4s ease;
 +
transition: all 0.4s ease;
 +
}
 +
 
 +
/* hover for the links */
 +
.content_wrapper a:hover {
 +
text-decoration:none;
 +
color:#000000;
 +
}
 +
 
 +
/* non numbered lists */
 +
.content_wrapper ul {
 +
padding:0px 20px;
 +
font-size: 13px;
 +
font-family:Tahoma, Geneva, sans-serif;
 +
}
 +
 
 +
/* numbered lists */
 +
.content_wrapper ol {
 +
padding:0px;
 +
font-size: 13px;
 +
font-family:Tahoma, Geneva, sans-serif;
 +
}
 +
 
 +
/* Table */
 +
.content_wrapper table {
 +
width: 97%;
 +
margin:15px 10px;
 +
border: 1px solid #d3d3d3;
 +
border-collapse: collapse;
 +
}
 +
 
 +
/* table cells */
 +
.content_wrapper  td {
 +
padding: 10px;
 +
vertical-align: text-top;
 +
border: 1px solid #d3d3d3;
 +
border-collapse: collapse;
 +
}
 +
 
 +
/* table headers */
 +
.content_wrapper th {
 +
padding: 10px;
 +
vertical-align: text-top;
 +
border: 1px solid #d3d3d3;
 +
border-collapse: collapse;
 +
background-color:#f2f2f2;
 +
}
 +
 
 +
/* Button class */
 +
.button_click {
 +
margin: 10px auto;
 +
padding: 15px; width:12%; 
 +
text-align:center;
 +
font-weight:bold;
 +
background-color: #72c9b6;
 +
cursor:pointer; 
 +
-webkit-transition: all 0.4s ease;
 +
-moz-transition: all 0.4s ease;
 +
-ms-transition: all 0.4s ease;
 +
-o-transition: all 0.4s ease;
 +
transition: all 0.4s ease;
 +
}
 +
 
 +
/* button class on hover */
 +
.button_click:hover { 
 +
background-color:#000000;
 +
color:#72c9b6;
 +
}
 +
 
 +
/********************************* RESPONSIVE STYLING ********************************/
 +
 
 +
/* IF THE SCREEN IS LESS THAN 1000PX */
 +
 
 +
@media only screen and (max-width: 1000px) {
 +
 
 +
#content {width:100%; }
 +
.menu_wrapper {width:15%;}
 +
.content_wrapper {margin-left: 15%;}
 +
.menu_item {display:block;}
 +
.icon {display:none;}
 +
.highlight {padding:10px 0px;}
 +
}
 +
 
 +
 
 +
/* IF THE SCREEN IS LESS THAN 680PX */
 +
 
 +
@media only screen and (max-width: 680px) {
 +
.collapsable_menu_control { display:block;}
 +
.menu_item {display:none;}
 +
.menu_wrapper { width:100%; height: 15%; position:relative;}
 +
.content_wrapper {width:100%; margin-left:0px;}
 +
.column.half_size {width:100%; }
 +
.column img { width: 100%; padding: 5px 0px;}
 +
.icon {display:block;}
 +
.highlight {padding:15px 5px;}
 +
}
 +
 
 +
</style>
 +
 
 +
 
 +
 
 +
 
 +
<!--- THIS IS WHERE THE HTML BEGINS --->
 +
 
 +
 
 +
<!-- This tells the browser that your page is responsive -->
 +
 
 +
<head>
 +
<meta name="viewport" content="width=device-width, initial-scale=1">
 +
</head>
 +
 
 +
 
 +
 
 +
 
 +
<div class="menu_wrapper" >
 +
 
 +
 
 +
 
 +
 
 +
<div class="collapsable_menu_control"> MENU ▤ </div>
 +
 
 +
<ul id="accordion" class="accordion">
 +
 
 +
<li class="menu_item"> <a href="https://2016.igem.org/Team:Dundee_Schools">HOME </a> </li>
 +
 
 +
 
 +
<li class="menu_item"> <div class="icon plus"></div> TEAM
 +
<ul class="submenu">
 +
<li> <a href=" https://2016.igem.org/Team:Dundee_Schools/Team"> Meet the Agents </a> </li>
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Collaborations"> Collaborations </a> </li>
 +
                    </ul>
 +
                </li>
 +
 
 +
<li class="menu_item"> <div class="icon plus"></div> PROJECT 
 +
<ul class="submenu">
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Description">   Description </a></li>
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Design"> Design </a></li>
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Experiments"> Experiments </a></li>
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Proof"> Proof of Concept </a></li>
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Results"> Results </a></li>
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Notebook"> Notebook </a></li>
 +
                    </ul>
 +
                </li>
 +
 
 +
<li class="menu_item"> <div class="icon plus"></div> PARTS  
 +
<ul class="submenu">
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Parts">Parts </a></li>
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Basic_Part"> Basic Parts </a></li>
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Composite_Part"> Composite Parts </a></li>
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Part_Collection"> Part Collection </a></li>
 +
                    </ul>
 +
                </li>
 +
 
 +
 
 +
<li class="menu_item"> <a href="https://2016.igem.org/Team:Dundee_Schools/Safety"> SAFETY </a> </li>
 +
 
 +
 
 +
<li class="menu_item"> <a href="https://2016.igem.org/Team:Dundee_Schools/Attributions"> ATTRIBUTIONS </a></li>
 +
 
 +
 
 +
<li class="menu_item"> <div class="icon plus"></div> HUMAN PRACTICES
 +
<ul class="submenu">
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Human_Practices"> Human Practices </a></li>
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/HP/Silver"> Silver </a></li>
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/HP/Gold">Gold </a></li>
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Integrated_Practices"> Integrated Practices </a></li>
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Engagement"> Engagement </a></li>
 +
                    </ul>
 +
                </li>
 +
 
 +
 
 +
<li class="menu_item"> <div class="icon plus"></div> AWARDS
 +
<ul class="submenu">
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Model">Modelling </a></li>
 +
<li> <a href="https://2016.igem.org/Team:Dundee_Schools/Medals">Medals</a></li>
 +
                    </ul>
 +
                </li>
 +
</ul>
  
 
</div>
 
</div>
Line 91: Line 427:
  
  
 +
 +
<div class="content_wrapper">
 +
 +
 +
 +
<h1 id="team_name">  </h1>
 +
<h4 id="page_name">  </h4>
 +
 +
<img class="full_size" src="https://static.igem.org/mediawiki/2016/d/d5/T--Dundee_Schools--Homepage_header.png"/>
 +
 +
<h2>Abstract</h2>
 +
<p>Welcome to Scotland’s first ever high school iGEM team! For our project, we have assigned our special agent spiRNA on a mission to target <i>Vibrio cholerae</i> and <i>Shigella flexneri</i> - two waterborne bacteria that cause the diseases Cholera and Shigellosis, often proving fatal in developing countries. To achieve this, we’ve created a fusion protein which will allow our spiRNA to hitch a ride out of <i>E. coli</i>. Our agent will sneak its way into the target pathogen and complete its mission by preventing the pathogen from causing an infection.</p>
 +
<p>We’re targeting Cholera and Shigella specifically because they are both a major cause of fatalities in developing countries, due to treatments not being readily available or affordable. Therefore, we aim for our spiRNA to be a cheaper, more effective and more accessible alternative to current treatments; in other words, for it to FIGHT BACTERIAL INFECTIONS!</p>
 +
 +
</div>
 +
 +
</body>
  
 
<script>
 
<script>
−
if( ($(location).attr('href')).indexOf("submit") >= 0  ) {
+
 
−
$(".menu_wrapper").css( { "position": "absolute", "height": "auto"});
+
// This is the jquery part of your template.  Try not modify any of this code since it makes your menu work.
−
$("#wpTextbox1").css( 'margin-top', '440px');
+
 
 +
$(document).ready(function() {
 +
 
 +
$("#HQ_page").attr('id','');
 +
 +
 
 +
if ( wgPageName.substring( 0,  8) == "Template") {  // if the page is a template it displays the full name in a single line
 +
$("#team_name").html( wgPageName );  
 
}
 
}
 +
 +
else if (  ( (wgPageName.match(/\//g) || []).length ) == 0 ) {  // if it is the home page , just print the team's name
 +
$("#team_name").html( wgPageName.substring( 5, wgPageName.length ) );
 +
}
 +
 +
else {
 +
// this adds the team's name as an h1
 +
$("#team_name").html( wgPageName.substring( 5 , wgPageName.indexOf("/")  ) );
 +
 +
// this adds the page's title as an h4
 +
$("#page_name").html (    ( wgPageName.substring( wgPageName.indexOf("/") + 1, wgPageName.length ) ).replace( /\/|_/g , " ")  );
 +
}
 +
 +
 +
 +
 +
$('#accordion').find('.menu_item').click(function(){
 +
 +
//Expand or collapse this panel
 +
submenu = $(this).find('.submenu');
 +
submenu.toggle();
 +
 +
icon = $(this).find('.icon');
 +
 +
if ( !$( submenu ).is(':visible') ) {
 +
icon.removeClass("less").addClass("plus");
 +
}
 +
else {
 +
icon.removeClass("plus").addClass("less");
 +
}
 +
 +
//Hide the other panels
 +
$(".submenu").not(submenu).hide();
 +
$(".icon").not(icon).removeClass("less").addClass("plus");
 +
});
 +
 +
 +
$(".collapsable_menu_control").click(function() {
 +
$(".menu_item").toggle();
 +
});
 +
 +
$( window ).resize(function() {
 +
$(".menu_item").show();
 +
});
 +
 +
 +
});
 +
 +
 +
 +
 
</script>
 
</script>
  
 
</html>
 
</html>

Latest revision as of 03:39, 20 October 2016

MENU ▤

Abstract

Welcome to Scotland’s first ever high school iGEM team! For our project, we have assigned our special agent spiRNA on a mission to target Vibrio cholerae and Shigella flexneri - two waterborne bacteria that cause the diseases Cholera and Shigellosis, often proving fatal in developing countries. To achieve this, we’ve created a fusion protein which will allow our spiRNA to hitch a ride out of E. coli. Our agent will sneak its way into the target pathogen and complete its mission by preventing the pathogen from causing an infection.

We’re targeting Cholera and Shigella specifically because they are both a major cause of fatalities in developing countries, due to treatments not being readily available or affordable. Therefore, we aim for our spiRNA to be a cheaper, more effective and more accessible alternative to current treatments; in other words, for it to FIGHT BACTERIAL INFECTIONS!