Difference between revisions of "Team:USTC-Software"

 
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        <div class="title-bar-title">USTC-Software</div>
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                         <a href="#">USTC-Software</a>
 
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                            <h3>Logic</h3>
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                         <li><a href="https://2016.igem.org/Team:USTC-Software/Proof">Proof</a></li>
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                            <h3>Analysis</h3>
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                            <h3>DNA</h3>
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                         <a href="https://2016.igem.org/Team:USTC-Software/HumanPractices">Human Practices</a>
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                        <a href="https://2016.igem.org/Team:USTC-Software/Requirements">Requirements</a>
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                        <a href="https://2016.igem.org/Team:USTC-Software/Notebook">Notebook</a>
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                        <a href="https://2016.igem.org/Team:USTC-Software/Team">Team</a>
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                            <li><a href="https://2016.igem.org/Team:USTC-Software/Members">Members</a></li>
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                <h2 style="text-align:center;color:#3883d8;">An Extendable Platform For Synthetic Biology Researchers</h2>
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                <p>Welcome to Biohub! This is a open and fantastic platform with practical functions for synthetic biologists. For scientists whose goal is to make discoveries in biology, steps using bioinformatics can be seen as the most basic but rather troublesome part. To solve this, our team created Biohub.</p>
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                <p>Biohub is a platform with several plug-ins, which means that users can not only employ the functions we provide, but also develop new and useful ones which can meet their special needs, without caring for servers and network transmission.Others include Pathway_finder, which means find the correlation among genes, Pano, meaning designing genetic circuits like an artist, Simulation, which can imitate real experimental circumstances, and other splendid functions.</p>
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            </div>
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            <div class="small-12 large-6 columns inner-text-container slide-in-right" id="animation1">
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                <img src="imgs/animation1.png">
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                <h3 class="inner-text">some image</h3>
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         </div>
 
         </div>
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         <div class="row" id="link2" data-magellan-target="link2">
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         <div data-sticky-container id="sticky-wrapper">
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            <div class="small-12 columns">
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            <nav class="top-bar show-for-large sticky" id="navbar-head" data-sticky data-top-anchor="sticky-wrapper" data-stick-to="top" data-margin-top="0">
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                <h2 style="text-align:center;color:#38ced7"><span>Pathway Finder</span></h2>
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                <div class="top-bar-title">
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                    <ul class="menu">
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            <div class="small-12 columns">
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                        <li class="menu-text" id="nav-top">
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                <p>Biltong pastrami kielbasa short ribs, turducken shoulder pork chop boudin ground round speck cow. Fatback leberkas shank hamburger, tail pork belly tongue bresaola short ribs corned beef speck tri-tip ribeye. Filet mignon shoulder speck pastrami. Ham hock turducken corned beef shankle. Meatloaf shankle sausage boudin, shank flank turducken tenderloin pancetta ball tip. Biltong boudin jowl drumstick pig.</p>
+
                            <a href="#">USTC-Software</a>
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                <p>Sirloin venison bresaola andouille pastrami short ribs. Short loin cow capicola tail ham hock leberkas. Frankfurter meatloaf capicola, swine ball tip jerky pork loin pork belly cow ribeye brisket strip steak jowl beef ribs ham hock. Pastrami ham hock rump turkey, pork belly capicola jerky. Turkey chuck beef, bresaola filet mignon jerky tri-tip pastrami. Bacon capicola jowl fatback short ribs. Speck shankle bacon chuck.</p>
+
                        </li>
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                <p>Pork loin tail pork belly shank ham. Kielbasa venison ham, short loin ham hock beef ribs tri-tip ball tip pork belly. Ribeye sirloin sausage tenderloin hamburger. Strip steak tongue turkey, andouille bacon beef ribs venison. T-bone ball tip bresaola fatback, ground round meatball chicken sausage tongue pork chop leberkas sirloin jerky shank bacon. Turducken sirloin cow shankle pig, leberkas venison boudin pastrami.</p>
+
                    </ul>
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                <p>Cow fatback short loin, hamburger speck jowl turducken capicola ham hock. Hamburger corned beef strip steak shank filet mignon, jerky capicola chicken jowl ribeye pork ham hock ground round bresaola. Jowl ribeye kielbasa drumstick pork belly leberkas. Spare ribs fatback shankle, hamburger meatloaf sausage pork loin andouille pork kielbasa. Pancetta shank tongue, leberkas turducken shoulder rump meatball pork belly pig hamburger brisket biltong. Tenderloin short ribs pig, rump tail chuck turducken.
+
                </div>
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                </p>
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                <div class="top-bar-right">
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                <p>Cow tri-tip pork loin salami corned beef. T-bone turkey ham frankfurter, brisket cow chicken bacon rump sirloin. Pancetta ribeye salami leberkas speck shank. Ribeye prosciutto swine venison speck beef.</p>
+
                    <ul class="menu" data-magellan>
−
                <p>Biltong pastrami kielbasa short ribs, turducken shoulder pork chop boudin ground round speck cow. Fatback leberkas shank hamburger, tail pork belly tongue bresaola short ribs corned beef speck tri-tip ribeye. Filet mignon shoulder speck pastrami. Ham hock turducken corned beef shankle. Meatloaf shankle sausage boudin, shank flank turducken tenderloin pancetta ball tip. Biltong boudin jowl drumstick pig.</p>
+
                        <li id="nav-link1"><a href="#link1">Welcome</a></li>
−
            </div>
+
                        <li id="nav-link2"><a href="#link2">Simulation</a></li>
−
             <!-- slides-->
+
                        <li id="nav-link3"><a href="#link3">Pathway Finder</a></li>
 +
                        <li id="nav-link4"><a href="#link4">BioBrick</a></li>
 +
                        <li id="nav-link5"><a href="#link5">ABACUS</a></li>
 +
                        <li id="nav-link6"><a href="#link6">Blast</a></li>
 +
                    </ul>
 +
                </div>
 +
             </nav>
 
         </div>
 
         </div>
−
         <div class="row animation" id="link3" data-magellan-target="link3">
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         <section id="main-section">
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            <div class="small-12 columns">
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            <div class="row animation" id="link1" data-magellan-target="link1">
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                <h2 style="text-align:center;color:#22d659">Simulation</h2>
+
                <div class="small-12 large-5 columns silde-in-left" id="text1">
 +
                    <h2 style="text-align:center;color:#3883d8;">Welcome to BioHub!</h2>
 +
                    <p>Biohub is a software tool for synthetic biologists developed by USTC-Software. It aims at helping synthetic biologists to deal with data from different types such as regulatory proteins, regulatory elements in gene expression.</p>
 +
                    <p>Biohub is done using an extensive plug-in system with some handy utility such as pathway-finding, one key blast and quick query. Users can have their own personalized Biohub according to their need.</p>
 +
                    <a href="https://2016.igem.org/Team:USTC-Software/Description#Overview">Learn More</a>
 +
                </div>
 +
                <div class="small-12 large-6 columns inner-text-container slide-in-right" id="animation1">
 +
                    <img src="https://static.igem.org/mediawiki/2016/1/18/T--USTC-Software--MainPage_Welcome.png">
 +
                    <h3 class="inner-text">some image</h3>
 +
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             </div>
 
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             <div class="small-12 large-6 columns inner-text-container" id="animation2">
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             <div class="row animation" id="link2" data-magellan-target="link2">
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                <img src="imgs/animation1.png">
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                <div class="small-12 large-6 columns inner-text-container slide-in-right">
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                <h3 class="inner-text">some image</h3>
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                    <img src="https://static.igem.org/mediawiki/2016/thumb/d/dd/T--USTC-Software--CurveFitting.png/699px-T--USTC-Software--CurveFitting.png">
 +
                    <h3 class="inner-text">some image</h3>
 +
                </div>
 +
                <div class="small-12 large-5 columns silde-in-left">
 +
                    <h2 style="text-align:center;color:#38ced7;"><span>Simulation</span></h2>
 +
                    <p>See the detailed structure of a designed gene circuit.</p>
 +
                    <p>Simulation for biology processes, especially unstable ones, and making everything beautiful and clear.</p>
 +
                    <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_Simulation">Learn More</a>
 +
                </div>
 
             </div>
 
             </div>
−
             <div class="small-12 large-6 columns" id="text2">
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             <div class="row animation" id="link3" data-magellan-target="link3">
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                <p>Cow fatback short loin, hamburger speck jowl turducken capicola ham hock. Hamburger corned beef strip steak shank filet mignon, jerky capicola chicken jowl ribeye pork ham hock ground round bresaola. Jowl ribeye kielbasa drumstick pork belly leberkas. Spare ribs fatback shankle, hamburger meatloaf sausage pork loin andouille pork kielbasa. Pancetta shank tongue, leberkas turducken shoulder rump meatball pork belly pig hamburger brisket biltong. Tenderloin short ribs pig, rump tail chuck turducken.</p>
+
                <div class="small-12 large-5 columns">
−
                <p>Cow tri-tip pork loin salami corned beef. T-bone turkey ham frankfurter, brisket cow chicken bacon rump sirloin. Pancetta ribeye salami leberkas speck shank. Ribeye prosciutto swine venison speck beef.</p>
+
                    <h2 style="text-align:center;color:#22d659">Pathway Finder</h2>
−
                 <p>Sirloin venison bresaola andouille pastrami short ribs. Short loin cow capicola tail ham hock leberkas. Frankfurter meatloaf capicola, swine ball tip jerky pork loin pork belly cow ribeye brisket strip steak jowl beef ribs ham hock. Pastrami ham hock rump turkey, pork belly capicola jerky. Turkey chuck beef, bresaola filet mignon jerky tri-tip pastrami. Bacon capicola jowl fatback short ribs. Speck shankle bacon chuck.</p>
+
                    <p>Pathway finder is a module integrated in the pano to provide faster and more convenient ways to find paths from a specific source node to another target node, select appropriate paths, and add them to the pano.</p>
 +
                    <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_Pathway_finder">Learn More</a>
 +
                 </div>
 +
                <div class="small-12 large-6 columns inner-text-container">
 +
                    <img src="https://static.igem.org/mediawiki/2016/thumb/6/68/T--USTC-Software--MainPagePathWay.png/730px-T--USTC-Software--MainPagePathWay.png">
 +
                    <h3 class="inner-text">some image</h3>
 +
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        </div>
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                <div class="small-12 large-6 columns inner-text-container slide-in-right">
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            <div class="small-12 columns">
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                    <img src="https://static.igem.org/mediawiki/2016/7/7f/T--USTC-Software--MainPageBioBrick.png">
−
                 <h2 style="text-align:center;color:#953543">ABACUS</h2>
+
                    <h3 class="inner-text">some image</h3>
 +
                 </div>
 +
                <div class="small-12 large-5 columns silde-in-left">
 +
                    <h2 style="text-align:center;color:#953543">BioBrick</h2>
 +
                    <p>Good searching engine, for good Bricks. Searching with various kinds of keywords.</p>
 +
                    <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_Biobrick_manager">Learn More</a>
 +
                </div>
 
             </div>
 
             </div>
−
             <div class="small-12 columns">
+
             <div class="row animation" id="link5" data-magellan-target="link5">
−
                <p>Sirloin venison bresaola andouille pastrami short ribs. Short loin cow capicola tail ham hock leberkas. Frankfurter meatloaf capicola, swine ball tip jerky pork loin pork belly cow ribeye brisket strip steak jowl beef ribs ham hock. Pastrami ham hock rump turkey, pork belly capicola jerky. Turkey chuck beef, bresaola filet mignon jerky tri-tip pastrami. Bacon capicola jowl fatback short ribs. Speck shankle bacon chuck.</p>
+
                <div class="small-12 large-5 columns">
−
                <p>Pork loin tail pork belly shank ham. Kielbasa venison ham, short loin ham hock beef ribs tri-tip ball tip pork belly. Ribeye sirloin sausage tenderloin hamburger. Strip steak tongue turkey, andouille bacon beef ribs venison. T-bone ball tip bresaola fatback, ground round meatball chicken sausage tongue pork chop leberkas sirloin jerky shank bacon. Turducken sirloin cow shankle pig, leberkas venison boudin pastrami.</p>
+
                    <h2 style="text-align:center;">ABACUS</h2>
−
                <p>Cow fatback short loin, hamburger speck jowl turducken capicola ham hock. Hamburger corned beef strip steak shank filet mignon, jerky capicola chicken jowl ribeye pork ham hock ground round bresaola. Jowl ribeye kielbasa drumstick pork belly leberkas. Spare ribs fatback shankle, hamburger meatloaf sausage pork loin andouille pork kielbasa. Pancetta shank tongue, leberkas turducken shoulder rump meatball pork belly pig hamburger brisket biltong. Tenderloin short ribs pig, rump tail chuck turducken.
+
                    <p>Design better new protein,and rescue biologists from repetitive and useless experiments.</p>
−
                 </p>
+
                    <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_ABACUS">Learn More</a>
−
                 <p>Cow tri-tip pork loin salami corned beef. T-bone turkey ham frankfurter, brisket cow chicken bacon rump sirloin. Pancetta ribeye salami leberkas speck shank. Ribeye prosciutto swine venison speck beef.</p>
+
                 </div>
−
                <p>Biltong pastrami kielbasa short ribs, turducken shoulder pork chop boudin ground round speck cow. Fatback leberkas shank hamburger, tail pork belly tongue bresaola short ribs corned beef speck tri-tip ribeye. Filet mignon shoulder speck pastrami. Ham hock turducken corned beef shankle. Meatloaf shankle sausage boudin, shank flank turducken tenderloin pancetta ball tip. Biltong boudin jowl drumstick pig.</p>
+
                 <div class="small-12 large-6 columns inner-text-container">
−
                 <p>Sirloin venison bresaola andouille pastrami short ribs. Short loin cow capicola tail ham hock leberkas. Frankfurter meatloaf capicola, swine ball tip jerky pork loin pork belly cow ribeye brisket strip steak jowl beef ribs ham hock. Pastrami ham hock rump turkey, pork belly capicola jerky. Turkey chuck beef, bresaola filet mignon jerky tri-tip pastrami. Bacon capicola jowl fatback short ribs. Speck shankle bacon chuck.</p>
+
                    <img src="https://static.igem.org/mediawiki/2016/thumb/5/5c/T--USTC-Software--MainPageABACUS.png/600px-T--USTC-Software--MainPageABACUS.png.jpeg">
 +
                    <h3 class="inner-text">some image</h3>
 +
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             </div>
 
             </div>
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        </div>
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            <div class="row animation" id="link6" data-magellan-target="link6">
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        <div class="row" id="link5" data-magellan-target="link5">
+
                <div class="small-12 large-6 columns inner-text-container slide-in-right">
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            <div class="small-12 columns">
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                    <img src="https://static.igem.org/mediawiki/2016/e/ef/T--USTC-Software--blast0.jpg">
−
                 <h2 style="text-align:center;">Unit Test</h2>
+
                    <h3 class="inner-text">some image</h3>
 +
                 </div>
 +
                <div class="small-12 large-5 columns silde-in-left">
 +
                    <h2 style="text-align:center;color:#953543">Blast</h2>
 +
                    <p>Blast Give You An Enjoyable Experience</p>
 +
                    <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_BLAST">Learn More</a>
 +
                </div>
 
             </div>
 
             </div>
−
             <div class="col-md-10">
+
             <div class="row animation" id="link7" data-magellan-target="link7">
−
                 <p>Pork loin tail pork belly shank ham. Kielbasa venison ham, short loin ham hock beef ribs tri-tip ball tip pork belly. Ribeye sirloin sausage tenderloin hamburger. Strip steak tongue turkey, andouille bacon beef ribs venison. T-bone ball tip bresaola fatback, ground round meatball chicken sausage tongue pork chop leberkas sirloin jerky shank bacon. Turducken sirloin cow shankle pig, leberkas venison boudin pastrami.</p>
+
                 <div class="small-12 large-12 columns silde-in-left">
−
                <p>Cow fatback short loin, hamburger speck jowl turducken capicola ham hock. Hamburger corned beef strip steak shank filet mignon, jerky capicola chicken jowl ribeye pork ham hock ground round bresaola. Jowl ribeye kielbasa drumstick pork belly leberkas. Spare ribs fatback shankle, hamburger meatloaf sausage pork loin andouille pork kielbasa. Pancetta shank tongue, leberkas turducken shoulder rump meatball pork belly pig hamburger brisket biltong. Tenderloin short ribs pig, rump tail chuck turducken.
+
                    <a href="https://2016.igem.org/Team:USTC-Software/Installation"><h2 style="text-align:center">Try It Now!</h2></a>
−
                </p>
+
                 </div>
−
                 <p>Cow tri-tip pork loin salami corned beef. T-bone turkey ham frankfurter, brisket cow chicken bacon rump sirloin. Pancetta ribeye salami leberkas speck shank. Ribeye prosciutto swine venison speck beef.</p>
+
 
             </div>
 
             </div>
−
        </div>
+
            <footer class="row">
−
    </section>
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                <div class="column small-8 small-offset-2 large-4 large-offset-2 ar1">
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</main>
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                    <h2>Links</h2>
−
<script type="text/javascript" src="https://2016.igem.org/Template:USTC-Software/js/foundationjs?
+
                    <p><a href="http://www.ustc.edu.cn">USTC</a></p>
 +
                    <p><a href="https://2014.igem.org/Team:USTC-Software">Biopano</a></p>
 +
                    <p>&nbsp;</p>
 +
                </div>
 +
                <div class="column small-8 small-offset-2 large-4 large-offset-0 end ar2">
 +
                    <h2>Contact Us</h2>
 +
                    <p>96, Jinzhai RD.</p>
 +
                    <p>Baohe DST.</p>
 +
                    <p>Hefei, Anhui, PRC</p>
 +
                    <p>&nbsp;</p>
 +
                </div>
 +
            </footer>
 +
        </section>
 +
    </main>
 +
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<script type="text/javascript" src="https://2016.igem.org/Template:USTC-Software/js/velocity?
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<script type="text/javascript" src="https://2016.igem.org/Template:USTC-Software/js/velocityui?
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<script type="text/javascript" src="https://2016.igem.org/Template:USTC-Software/js/mainpage?
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Latest revision as of 03:56, 20 October 2016

Menu

Welcome to BioHub!

Biohub is a software tool for synthetic biologists developed by USTC-Software. It aims at helping synthetic biologists to deal with data from different types such as regulatory proteins, regulatory elements in gene expression.

Biohub is done using an extensive plug-in system with some handy utility such as pathway-finding, one key blast and quick query. Users can have their own personalized Biohub according to their need.

Learn More

some image

some image

Simulation

See the detailed structure of a designed gene circuit.

Simulation for biology processes, especially unstable ones, and making everything beautiful and clear.

Learn More

Pathway Finder

Pathway finder is a module integrated in the pano to provide faster and more convenient ways to find paths from a specific source node to another target node, select appropriate paths, and add them to the pano.

Learn More

some image

some image

BioBrick

Good searching engine, for good Bricks. Searching with various kinds of keywords.

Learn More

ABACUS

Design better new protein,and rescue biologists from repetitive and useless experiments.

Learn More

some image

some image

Blast

Blast Give You An Enjoyable Experience

Learn More

Links

USTC

Biopano

 

Contact Us

96, Jinzhai RD.

Baohe DST.

Hefei, Anhui, PRC