Difference between revisions of "Team:USTC-Software"

 
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                         <li id="nav-link2"><a href="#link2">Simulation</a></li>
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                            <h3>Logic</h3>
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                    <h2 style="text-align:center;color:#3883d8;">From a truth table to abstract logic circuits.</h2>
 
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                     <p> In BioBLESS a truth table dialog box will be displayed for users to input Boolean numbers 0/1. All you need to do is to click Boolean buttons and then “Create”. </p>
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                     <h2 style="text-align:center;color:#3883d8;">Welcome to BioHub!</h2>
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                     <p>The corresponding designed logic circuits with different predicted performances will be automatically generated and displayed in order. You can immediately and clearly see the configuration of a designed logic circuit, which in most
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                     <p>Biohub is a software tool for synthetic biologists developed by USTC-Software. It aims at helping synthetic biologists to deal with data from different types such as regulatory proteins, regulatory elements in gene expression.</p>
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                        cases is supposed to be a compli- cated multi-input circuit.</p>
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                     <p>Biohub is done using an extensive plug-in system with some handy utility such as pathway-finding, one key blast and quick query. Users can have their own personalized Biohub according to their need.</p>
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                     <p>According to the perturbation ratio you input, such as 20% or 30%, the concentration-time curves of inputs and outputs will be shown toge- ther to shed light on the robustness of a designed gene circuit. Moreover, data processing and
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                    <a href="https://2016.igem.org/Team:USTC-Software/Description#Overview">Learn More</a>
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                        demonstration will help users to better understand the robustness of designed gene circuits.</p>
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                     <h2 style="text-align:center;color:#38ced7"><span>See the detailed structure of a designed gene circuit</span></h2>
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                     <p>Biltong pastrami kielbasa short ribs, turducken shoulder pork chop boudin ground round speck cow. Fatback leberkas shank hamburger, tail pork belly tongue bresaola short ribs corned beef speck tri-tip ribeye. Filet mignon shoulder
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                     <h2 style="text-align:center;color:#38ced7;"><span>Simulation</span></h2>
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                        speck pastrami. Ham hock turducken corned beef shankle. Meatloaf shankle sausage boudin, shank flank turducken tenderloin pancetta ball tip. Biltong boudin jowl drumstick pig.</p>
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                     <p>See the detailed structure of a designed gene circuit.</p>
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                    <p>Sirloin venison bresaola andouille pastrami short ribs. Short loin cow capicola tail ham hock leberkas. Frankfurter meatloaf capicola, swine ball tip jerky pork loin pork belly cow ribeye brisket strip steak jowl beef ribs ham hock.
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                     <p>Simulation for biology processes, especially unstable ones, and making everything beautiful and clear.</p>
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                        Pastrami ham hock rump turkey, pork belly capicola jerky. Turkey chuck beef, bresaola filet mignon jerky tri-tip pastrami. Bacon capicola jowl fatback short ribs. Speck shankle bacon chuck.</p>
+
                     <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_Simulation">Learn More</a>
−
                     <p>Pork loin tail pork belly shank ham. Kielbasa venison ham, short loin ham hock beef ribs tri-tip ball tip pork belly. Ribeye sirloin sausage tenderloin hamburger. Strip steak tongue turkey, andouille bacon beef ribs venison. T-bone
+
−
                        ball tip bresaola fatback, ground round meatball chicken sausage tongue pork chop leberkas sirloin jerky shank bacon. Turducken sirloin cow shankle pig, leberkas venison boudin pastrami.</p>
+
−
                     <p>Cow fatback short loin, hamburger speck jowl turducken capicola ham hock. Hamburger corned beef strip steak shank filet mignon, jerky capicola chicken jowl ribeye pork ham hock ground round bresaola. Jowl ribeye kielbasa drumstick
+
−
                        pork belly leberkas. Spare ribs fatback shankle, hamburger meatloaf sausage pork loin andouille pork kielbasa. Pancetta shank tongue, leberkas turducken shoulder rump meatball pork belly pig hamburger brisket biltong. Tenderloin
+
−
                        short ribs pig, rump tail chuck turducken.
+
−
                    </p>
+
−
                     <p>Cow tri-tip pork loin salami corned beef. T-bone turkey ham frankfurter, brisket cow chicken bacon rump sirloin. Pancetta ribeye salami leberkas speck shank. Ribeye prosciutto swine venison speck beef.</p>
+
−
                    <p>Biltong pastrami kielbasa short ribs, turducken shoulder pork chop boudin ground round speck cow. Fatback leberkas shank hamburger, tail pork belly tongue bresaola short ribs corned beef speck tri-tip ribeye. Filet mignon shoulder
+
−
                        speck pastrami. Ham hock turducken corned beef shankle. Meatloaf shankle sausage boudin, shank flank turducken tenderloin pancetta ball tip. Biltong boudin jowl drumstick pig.</p>
+
 
                 </div>
 
                 </div>
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                <!-- slides-->
 
−
            </div>
 
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            <div class="orbit" role="region" aria-label="Some Pictures" data-orbit data-options="animInFromLeft:fade-in; animInFromRight:fade-in; animOutToLeft:fade-out; animOutToRight:fade-out;">
 
−
                <ul class="orbit-container">
 
−
                    <button class="orbit-previous"><span class="show-for-sr">Previous Slide</span>&#9664;&#xFE0E;</button>
 
−
                    <button class="orbit-next"><span class="show-for-sr">Next Slide</span>&#9654;&#xFE0E;</button>
 
−
                    <li class="is-active orbit-slide">
 
−
                        <img class="orbit-image" src="http://placehold.it/1440x700" alt="image">
 
−
                        <figcaption class="orbit-caption">image, the final frontier.</figcaption>
 
−
                    </li>
 
−
                    <li class="orbit-slide">
 
−
                        <img class="orbit-image" src="http://placehold.it/1440x700" alt="image">
 
−
                        <figcaption class="orbit-caption">Lets Rocket!</figcaption>
 
−
                    </li>
 
−
                    <li class="orbit-slide">
 
−
                        <img class="orbit-image" src="http://placehold.it/1440x700" alt="image">
 
−
                        <figcaption class="orbit-caption">Encapsulating</figcaption>
 
−
                    </li>
 
−
                    <li class="orbit-slide">
 
−
                        <img class="orbit-image" src="http://placehold.it/1440x700" alt="image">
 
−
                        <figcaption class="orbit-caption">Outta This World</figcaption>
 
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                    </li>
 
−
                </ul>
 
−
                <nav class="orbit-bullets">
 
−
                    <button class="is-active" data-slide="0"><span class="show-for-sr">First slide details.</span><span class="show-for-sr">Current Slide</span></button>
 
−
                    <button data-slide="1"><span class="show-for-sr">Second slide details.</span></button>
 
−
                    <button data-slide="2"><span class="show-for-sr">Third slide details.</span></button>
 
−
                    <button data-slide="3"><span class="show-for-sr">Fourth slide details.</span></button>
 
−
                </nav>
 
 
             </div>
 
             </div>
 
             <div class="row animation" id="link3" data-magellan-target="link3">
 
             <div class="row animation" id="link3" data-magellan-target="link3">
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                 <div class="small-12 columns">
+
                 <div class="small-12 large-5 columns">
−
                     <h2 style="text-align:center;color:#22d659">Get concentration-time simulation results</h2>
+
                     <h2 style="text-align:center;color:#22d659">Pathway Finder</h2>
 +
                    <p>Pathway finder is a module integrated in the pano to provide faster and more convenient ways to find paths from a specific source node to another target node, select appropriate paths, and add them to the pano.</p>
 +
                    <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_Pathway_finder">Learn More</a>
 
                 </div>
 
                 </div>
−
                 <div class="small-12 large-7 columns inner-text-container" id="animation2">
+
                 <div class="small-12 large-6 columns inner-text-container">
−
                     <img src="http://placehold.it/500x300">
+
                     <img src="https://static.igem.org/mediawiki/2016/thumb/6/68/T--USTC-Software--MainPagePathWay.png/730px-T--USTC-Software--MainPagePathWay.png">
 
                     <h3 class="inner-text">some image</h3>
 
                     <h3 class="inner-text">some image</h3>
 
                 </div>
 
                 </div>
−
                 <div class="small-12 large-5 columns" id="text2">
+
            </div>
−
                     <p>Cow fatback short loin, hamburger speck jowl turducken capicola ham hock. Hamburger corned beef strip steak shank filet mignon, jerky capicola chicken jowl ribeye pork ham hock ground round bresaola. Jowl ribeye kielbasa drumstick
+
            <div class="row animation" id="link4" data-magellan-target="link4">
−
                        pork belly leberkas. Spare ribs fatback shankle, hamburger meatloaf sausage pork loin andouille pork kielbasa. Pancetta shank tongue, leberkas turducken shoulder rump meatball pork belly pig hamburger brisket biltong. Tenderloin
+
                 <div class="small-12 large-6 columns inner-text-container slide-in-right">
−
                        short ribs pig, rump tail chuck turducken.</p>
+
                    <img src="https://static.igem.org/mediawiki/2016/7/7f/T--USTC-Software--MainPageBioBrick.png">
−
                     <p>Cow tri-tip pork loin salami corned beef. T-bone turkey ham frankfurter, brisket cow chicken bacon rump sirloin. Pancetta ribeye salami leberkas speck shank. Ribeye prosciutto swine venison speck beef.</p>
+
                     <h3 class="inner-text">some image</h3>
−
                     <p>Sirloin venison bresaola andouille pastrami short ribs. Short loin cow capicola tail ham hock leberkas. Frankfurter meatloaf capicola, swine ball tip jerky pork loin pork belly cow ribeye brisket strip steak jowl beef ribs ham hock.
+
                </div>
−
                        Pastrami ham hock rump turkey, pork belly capicola jerky. Turkey chuck beef, bresaola filet mignon jerky tri-tip pastrami. Bacon capicola jowl fatback short ribs. Speck shankle bacon chuck.</p>
+
                <div class="small-12 large-5 columns silde-in-left">
 +
                    <h2 style="text-align:center;color:#953543">BioBrick</h2>
 +
                     <p>Good searching engine, for good Bricks. Searching with various kinds of keywords.</p>
 +
                     <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_Biobrick_manager">Learn More</a>
 
                 </div>
 
                 </div>
 
             </div>
 
             </div>
−
             <div class="row" id="link4" data-magellan-target="link4">
+
             <div class="row animation" id="link5" data-magellan-target="link5">
−
                 <div class="small-12 columns">
+
                 <div class="small-12 large-5 columns">
−
                     <h2 style="text-align:center;color:#953543">Get robustness and sensitivity analysis</h2>
+
                     <h2 style="text-align:center;">ABACUS</h2>
 +
                    <p>Design better new protein,and rescue biologists from repetitive and useless experiments.</p>
 +
                    <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_ABACUS">Learn More</a>
 
                 </div>
 
                 </div>
−
                 <div class="small-12 columns">
+
                 <div class="small-12 large-6 columns inner-text-container">
−
                     <p>Sirloin venison bresaola andouille pastrami short ribs. Short loin cow capicola tail ham hock leberkas. Frankfurter meatloaf capicola, swine ball tip jerky pork loin pork belly cow ribeye brisket strip steak jowl beef ribs ham hock.
+
                     <img src="https://static.igem.org/mediawiki/2016/thumb/5/5c/T--USTC-Software--MainPageABACUS.png/600px-T--USTC-Software--MainPageABACUS.png.jpeg">
−
                        Pastrami ham hock rump turkey, pork belly capicola jerky. Turkey chuck beef, bresaola filet mignon jerky tri-tip pastrami. Bacon capicola jowl fatback short ribs. Speck shankle bacon chuck.</p>
+
                     <h3 class="inner-text">some image</h3>
−
                    <p>Pork loin tail pork belly shank ham. Kielbasa venison ham, short loin ham hock beef ribs tri-tip ball tip pork belly. Ribeye sirloin sausage tenderloin hamburger. Strip steak tongue turkey, andouille bacon beef ribs venison. T-bone
+
−
                        ball tip bresaola fatback, ground round meatball chicken sausage tongue pork chop leberkas sirloin jerky shank bacon. Turducken sirloin cow shankle pig, leberkas venison boudin pastrami.</p>
+
−
                    <p>Cow fatback short loin, hamburger speck jowl turducken capicola ham hock. Hamburger corned beef strip steak shank filet mignon, jerky capicola chicken jowl ribeye pork ham hock ground round bresaola. Jowl ribeye kielbasa drumstick
+
−
                        pork belly leberkas. Spare ribs fatback shankle, hamburger meatloaf sausage pork loin andouille pork kielbasa. Pancetta shank tongue, leberkas turducken shoulder rump meatball pork belly pig hamburger brisket biltong. Tenderloin
+
−
                        short ribs pig, rump tail chuck turducken.
+
−
                    </p>
+
−
                    <p>Cow tri-tip pork loin salami corned beef. T-bone turkey ham frankfurter, brisket cow chicken bacon rump sirloin. Pancetta ribeye salami leberkas speck shank. Ribeye prosciutto swine venison speck beef.</p>
+
−
                     <p>Biltong pastrami kielbasa short ribs, turducken shoulder pork chop boudin ground round speck cow. Fatback leberkas shank hamburger, tail pork belly tongue bresaola short ribs corned beef speck tri-tip ribeye. Filet mignon shoulder
+
−
                        speck pastrami. Ham hock turducken corned beef shankle. Meatloaf shankle sausage boudin, shank flank turducken tenderloin pancetta ball tip. Biltong boudin jowl drumstick pig.</p>
+
−
                    <p>Sirloin venison bresaola andouille pastrami short ribs. Short loin cow capicola tail ham hock leberkas. Frankfurter meatloaf capicola, swine ball tip jerky pork loin pork belly cow ribeye brisket strip steak jowl beef ribs ham hock.
+
−
                        Pastrami ham hock rump turkey, pork belly capicola jerky. Turkey chuck beef, bresaola filet mignon jerky tri-tip pastrami. Bacon capicola jowl fatback short ribs. Speck shankle bacon chuck.</p>
+
 
                 </div>
 
                 </div>
 
             </div>
 
             </div>
−
             <div class="row" id="link5" data-magellan-target="link5">
+
             <div class="row animation" id="link6" data-magellan-target="link6">
−
                 <div class="small-12 columns">
+
                 <div class="small-12 large-6 columns inner-text-container slide-in-right">
−
                     <h2 style="text-align:center;">Get the DNA sequence!</h2>
+
                     <img src="https://static.igem.org/mediawiki/2016/e/ef/T--USTC-Software--blast0.jpg">
 +
                    <h3 class="inner-text">some image</h3>
 
                 </div>
 
                 </div>
−
                 <div class="col-md-10">
+
                 <div class="small-12 large-5 columns silde-in-left">
−
                     <p>Pork loin tail pork belly shank ham. Kielbasa venison ham, short loin ham hock beef ribs tri-tip ball tip pork belly. Ribeye sirloin sausage tenderloin hamburger. Strip steak tongue turkey, andouille bacon beef ribs venison. T-bone
+
                     <h2 style="text-align:center;color:#953543">Blast</h2>
−
                        ball tip bresaola fatback, ground round meatball chicken sausage tongue pork chop leberkas sirloin jerky shank bacon. Turducken sirloin cow shankle pig, leberkas venison boudin pastrami.</p>
+
                     <p>Blast Give You An Enjoyable Experience</p>
−
                     <p>Cow fatback short loin, hamburger speck jowl turducken capicola ham hock. Hamburger corned beef strip steak shank filet mignon, jerky capicola chicken jowl ribeye pork ham hock ground round bresaola. Jowl ribeye kielbasa drumstick
+
                     <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_BLAST">Learn More</a>
−
                        pork belly leberkas. Spare ribs fatback shankle, hamburger meatloaf sausage pork loin andouille pork kielbasa. Pancetta shank tongue, leberkas turducken shoulder rump meatball pork belly pig hamburger brisket biltong. Tenderloin
+
−
                        short ribs pig, rump tail chuck turducken.
+
−
                    </p>
+
−
                     <p>Cow tri-tip pork loin salami corned beef. T-bone turkey ham frankfurter, brisket cow chicken bacon rump sirloin. Pancetta ribeye salami leberkas speck shank. Ribeye prosciutto swine venison speck beef.</p>
+
 
                 </div>
 
                 </div>
 
             </div>
 
             </div>
−
             <div class="img-fixed-position content-container" style="background-image:url(http://placehold.it/1080x600);">
+
             <div class="row animation" id="link7" data-magellan-target="link7">
 +
                <div class="small-12 large-12 columns silde-in-left">
 +
                    <a href="https://2016.igem.org/Team:USTC-Software/Installation"><h2 style="text-align:center">Try It Now!</h2></a>
 +
                </div>
 
             </div>
 
             </div>
−
             <div class="row">
+
             <footer class="row">
−
                <div class="small-12 columns">
+
                <div class="column small-8 small-offset-2 large-4 large-offset-2 ar1">
−
                     <p>Biltong pastrami kielbasa short ribs, turducken shoulder pork chop boudin ground round speck cow. Fatback leberkas shank hamburger, tail pork belly tongue bresaola short ribs corned beef speck tri-tip ribeye. Filet mignon shoulder
+
                     <h2>Links</h2>
−
                        speck pastrami. Ham hock turducken corned beef shankle. Meatloaf shankle sausage boudin, shank flank turducken tenderloin pancetta ball tip. Biltong boudin jowl drumstick pig.</p>
+
                     <p><a href="http://www.ustc.edu.cn">USTC</a></p>
−
                     <p>Sirloin venison bresaola andouille pastrami short ribs. Short loin cow capicola tail ham hock leberkas. Frankfurter meatloaf capicola, swine ball tip jerky pork loin pork belly cow ribeye brisket strip steak jowl beef ribs ham hock.
+
                     <p><a href="https://2014.igem.org/Team:USTC-Software">Biopano</a></p>
−
                        Pastrami ham hock rump turkey, pork belly capicola jerky. Turkey chuck beef, bresaola filet mignon jerky tri-tip pastrami. Bacon capicola jowl fatback short ribs. Speck shankle bacon chuck.</p>
+
                     <p>&nbsp;</p>
−
                     <p> Users have the freedom to drag specific BioBricks on our canvas and combine them into a functional gene circuit. Then the DNA sequence and other information of the designed circuit are available for users to check and download.</p>
+
−
                     <p>
+
−
                        Wet lab protocols are partly incorporated into our DNA sequences which may make the design better and applicable in laboratories.
+
−
                    </p>
+
 
                 </div>
 
                 </div>
−
            </div>
+
                <div class="column small-8 small-offset-2 large-4 large-offset-0 end ar2">
 +
                    <h2>Contact Us</h2>
 +
                    <p>96, Jinzhai RD.</p>
 +
                    <p>Baohe DST.</p>
 +
                    <p>Hefei, Anhui, PRC</p>
 +
                    <p>&nbsp;</p>
 +
                </div>
 +
            </footer>
 
         </section>
 
         </section>
 
     </main>
 
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Latest revision as of 03:56, 20 October 2016

Menu

Welcome to BioHub!

Biohub is a software tool for synthetic biologists developed by USTC-Software. It aims at helping synthetic biologists to deal with data from different types such as regulatory proteins, regulatory elements in gene expression.

Biohub is done using an extensive plug-in system with some handy utility such as pathway-finding, one key blast and quick query. Users can have their own personalized Biohub according to their need.

Learn More

some image

some image

Simulation

See the detailed structure of a designed gene circuit.

Simulation for biology processes, especially unstable ones, and making everything beautiful and clear.

Learn More

Pathway Finder

Pathway finder is a module integrated in the pano to provide faster and more convenient ways to find paths from a specific source node to another target node, select appropriate paths, and add them to the pano.

Learn More

some image

some image

BioBrick

Good searching engine, for good Bricks. Searching with various kinds of keywords.

Learn More

ABACUS

Design better new protein,and rescue biologists from repetitive and useless experiments.

Learn More

some image

some image

Blast

Blast Give You An Enjoyable Experience

Learn More

Links

USTC

Biopano

 

Contact Us

96, Jinzhai RD.

Baohe DST.

Hefei, Anhui, PRC