Difference between revisions of "Team:USTC-Software"

 
(26 intermediate revisions by 5 users not shown)
Line 21: Line 21:
 
                         <li><a href="https://2016.igem.org/Team:USTC-Software/Description">Description</a></li>
 
                         <li><a href="https://2016.igem.org/Team:USTC-Software/Description">Description</a></li>
 
                         <li><a href="https://2016.igem.org/Team:USTC-Software/Video">Video</a></li>
 
                         <li><a href="https://2016.igem.org/Team:USTC-Software/Video">Video</a></li>
 +
                        <li><a href="https://2016.igem.org/Team:USTC-Software/Technology">Technology</a></li>
 
                         <li><a href="https://2016.igem.org/Team:USTC-Software/Proof">Proof</a></li>
 
                         <li><a href="https://2016.igem.org/Team:USTC-Software/Proof">Proof</a></li>
 +
                        <li><a href="https://2016.igem.org/Team:USTC-Software/Installation">Installation</a></li>
 
                     </ul>
 
                     </ul>
 
                 </li>
 
                 </li>
Line 28: Line 30:
 
                 </li>
 
                 </li>
 
                 <li>
 
                 <li>
−
                     <a href="https://2016.igem.org/Team:USTC-Software/Requirements">Requirments</a>
+
                     <a href="https://2016.igem.org/Team:USTC-Software/Requirements">Requirements</a>
 
                     <ul class="menu vertical">
 
                     <ul class="menu vertical">
 
                         <li><a href="https://2016.igem.org/Team:USTC-Software/Medals">Medals</a></li>
 
                         <li><a href="https://2016.igem.org/Team:USTC-Software/Medals">Medals</a></li>
Line 67: Line 69:
 
                         <a href="https://2016.igem.org/Team:USTC-Software/Project">Project</a>
 
                         <a href="https://2016.igem.org/Team:USTC-Software/Project">Project</a>
 
                         <ul class="menu vertical">
 
                         <ul class="menu vertical">
−
                            <li><a href="https://2016.igem.org/Team:USTC-Software/Description">Description</a></li>
+
                        <li><a href="https://2016.igem.org/Team:USTC-Software/Description">Description</a></li>
−
                            <li><a href="https://2016.igem.org/Team:USTC-Software/Video">Video</a></li>
+
                        <li><a href="https://2016.igem.org/Team:USTC-Software/Video">Video</a></li>
−
                            <li><a href="https://2016.igem.org/Team:USTC-Software/Proof">Proof</a></li>
+
                        <li><a href="https://2016.igem.org/Team:USTC-Software/Technology">Technology</a></li>
 +
                        <li><a href="https://2016.igem.org/Team:USTC-Software/Proof">Proof</a></li>
 +
                        <li><a href="https://2016.igem.org/Team:USTC-Software/Installation">Installation</a></li>
 
                         </ul>
 
                         </ul>
 
                     </li>
 
                     </li>
Line 76: Line 80:
 
                     </li>
 
                     </li>
 
                     <li>
 
                     <li>
−
                         <a href="https://2016.igem.org/Team:USTC-Software/Requirements">Requirments</a>
+
                         <a href="https://2016.igem.org/Team:USTC-Software/Requirements">Requirements</a>
 
                         <ul class="menu vertical">
 
                         <ul class="menu vertical">
 
                             <li><a href="https://2016.igem.org/Team:USTC-Software/Medals">Medals</a></li>
 
                             <li><a href="https://2016.igem.org/Team:USTC-Software/Medals">Medals</a></li>
Line 110: Line 114:
 
                 <div class="top-bar-right">
 
                 <div class="top-bar-right">
 
                     <ul class="menu" data-magellan>
 
                     <ul class="menu" data-magellan>
−
                         <li id="nav-link1"><a href="#link1">Logic</a></li>
+
                         <li id="nav-link1"><a href="#link1">Welcome</a></li>
−
                         <li id="nav-link2"><a href="#link2">Gene Network</a></li>
+
                         <li id="nav-link2"><a href="#link2">Simulation</a></li>
−
                         <li id="nav-link3"><a href="#link3">Simulation</a></li>
+
                         <li id="nav-link3"><a href="#link3">Pathway Finder</a></li>
−
                         <li id="nav-link4"><a href="#link4">Analysis</a></li>
+
                         <li id="nav-link4"><a href="#link4">BioBrick</a></li>
−
                         <li id="nav-link5"><a href="#link5">DNA</a></li>
+
                         <li id="nav-link5"><a href="#link5">ABACUS</a></li>
 +
                        <li id="nav-link6"><a href="#link6">Blast</a></li>
 
                     </ul>
 
                     </ul>
 
                 </div>
 
                 </div>
Line 121: Line 126:
 
         <section id="main-section">
 
         <section id="main-section">
 
             <div class="row animation" id="link1" data-magellan-target="link1">
 
             <div class="row animation" id="link1" data-magellan-target="link1">
−
                <div class="small-12 columns">
 
−
                    <h2 style="text-align:center;color:#3883d8;font-family:'Raleway';">Welcome to BioHub!</h2>
 
−
                </div>
 
 
                 <div class="small-12 large-5 columns silde-in-left" id="text1">
 
                 <div class="small-12 large-5 columns silde-in-left" id="text1">
 +
                    <h2 style="text-align:center;color:#3883d8;">Welcome to BioHub!</h2>
 
                     <p>Biohub is a software tool for synthetic biologists developed by USTC-Software. It aims at helping synthetic biologists to deal with data from different types such as regulatory proteins, regulatory elements in gene expression.</p>
 
                     <p>Biohub is a software tool for synthetic biologists developed by USTC-Software. It aims at helping synthetic biologists to deal with data from different types such as regulatory proteins, regulatory elements in gene expression.</p>
−
<p>Biohub is done using an extensive plug-in system with some handy utility such as pathway-finding, one key blast and quick query. Users can have their own personalized Biohub according to their need.</p>
+
                    <p>Biohub is done using an extensive plug-in system with some handy utility such as pathway-finding, one key blast and quick query. Users can have their own personalized Biohub according to their need.</p>
−
              <a href="about.html" class="button">Learn More</a>
+
                    <a href="https://2016.igem.org/Team:USTC-Software/Description#Overview">Learn More</a>
−
 
+
 
                 </div>
 
                 </div>
 
                 <div class="small-12 large-6 columns inner-text-container slide-in-right" id="animation1">
 
                 <div class="small-12 large-6 columns inner-text-container slide-in-right" id="animation1">
Line 135: Line 137:
 
                 </div>
 
                 </div>
 
             </div>
 
             </div>
−
             <div class="row" id="link2" data-magellan-target="link2">
+
             <div class="row animation" id="link2" data-magellan-target="link2">
−
                 <div class="small-12 columns">
+
                 <div class="small-12 large-6 columns inner-text-container slide-in-right">
−
                     <h2 style="text-align:center;color:#38ced7"><span>See the detailed structure of a designed gene circuit</span></h2>
+
                     <img src="https://static.igem.org/mediawiki/2016/thumb/d/dd/T--USTC-Software--CurveFitting.png/699px-T--USTC-Software--CurveFitting.png">
 +
                    <h3 class="inner-text">some image</h3>
 
                 </div>
 
                 </div>
−
                 <div class="small-12 columns">
+
                 <div class="small-12 large-5 columns silde-in-left">
−
                     <p>Biltong pastrami kielbasa short ribs, turducken shoulder pork chop boudin ground round speck cow. Fatback leberkas shank hamburger, tail pork belly tongue bresaola short ribs corned beef speck tri-tip ribeye. Filet mignon shoulder speck pastrami. Ham hock turducken corned beef shankle. Meatloaf shankle sausage boudin, shank flank turducken tenderloin pancetta ball tip. Biltong boudin jowl drumstick pig.</p>
+
                     <h2 style="text-align:center;color:#38ced7;"><span>Simulation</span></h2>
−
                    <p>Sirloin venison bresaola andouille pastrami short ribs. Short loin cow capicola tail ham hock leberkas. Frankfurter meatloaf capicola, swine ball tip jerky pork loin pork belly cow ribeye brisket strip steak jowl beef ribs ham hock. Pastrami ham hock rump turkey, pork belly capicola jerky. Turkey chuck beef, bresaola filet mignon jerky tri-tip pastrami. Bacon capicola jowl fatback short ribs. Speck shankle bacon chuck.</p>
+
                     <p>See the detailed structure of a designed gene circuit.</p>
−
                     <p>Pork loin tail pork belly shank ham. Kielbasa venison ham, short loin ham hock beef ribs tri-tip ball tip pork belly. Ribeye sirloin sausage tenderloin hamburger. Strip steak tongue turkey, andouille bacon beef ribs venison. T-bone ball tip bresaola fatback, ground round meatball chicken sausage tongue pork chop leberkas sirloin jerky shank bacon. Turducken sirloin cow shankle pig, leberkas venison boudin pastrami.</p>
+
                     <p>Simulation for biology processes, especially unstable ones, and making everything beautiful and clear.</p>
−
                     <p>Cow fatback short loin, hamburger speck jowl turducken capicola ham hock. Hamburger corned beef strip steak shank filet mignon, jerky capicola chicken jowl ribeye pork ham hock ground round bresaola. Jowl ribeye kielbasa drumstick pork belly leberkas. Spare ribs fatback shankle, hamburger meatloaf sausage pork loin andouille pork kielbasa. Pancetta shank tongue, leberkas turducken shoulder rump meatball pork belly pig hamburger brisket biltong. Tenderloin short ribs pig, rump tail chuck turducken.
+
                     <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_Simulation">Learn More</a>
−
                    </p>
+
−
                     <p>Cow tri-tip pork loin salami corned beef. T-bone turkey ham frankfurter, brisket cow chicken bacon rump sirloin. Pancetta ribeye salami leberkas speck shank. Ribeye prosciutto swine venison speck beef.</p>
+
−
                    <p>Biltong pastrami kielbasa short ribs, turducken shoulder pork chop boudin ground round speck cow. Fatback leberkas shank hamburger, tail pork belly tongue bresaola short ribs corned beef speck tri-tip ribeye. Filet mignon shoulder speck pastrami. Ham hock turducken corned beef shankle. Meatloaf shankle sausage boudin, shank flank turducken tenderloin pancetta ball tip. Biltong boudin jowl drumstick pig.</p>
+
 
                 </div>
 
                 </div>
 
             </div>
 
             </div>
 
             <div class="row animation" id="link3" data-magellan-target="link3">
 
             <div class="row animation" id="link3" data-magellan-target="link3">
−
                 <div class="small-12 columns">
+
                 <div class="small-12 large-5 columns">
−
                     <h2 style="text-align:center;color:#22d659">Get concentration-time simulation results</h2>
+
                     <h2 style="text-align:center;color:#22d659">Pathway Finder</h2>
 +
                    <p>Pathway finder is a module integrated in the pano to provide faster and more convenient ways to find paths from a specific source node to another target node, select appropriate paths, and add them to the pano.</p>
 +
                    <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_Pathway_finder">Learn More</a>
 
                 </div>
 
                 </div>
−
                 <div class="small-12 large-6 columns inner-text-container" id="animation2">
+
                 <div class="small-12 large-6 columns inner-text-container">
−
                     <img src="https://static.igem.org/mediawiki/2016/5/54/T--USTC-Software--ManPageABACUS.jpg">
+
                    <img src="https://static.igem.org/mediawiki/2016/thumb/6/68/T--USTC-Software--MainPagePathWay.png/730px-T--USTC-Software--MainPagePathWay.png">
 +
                    <h3 class="inner-text">some image</h3>
 +
                </div>
 +
            </div>
 +
            <div class="row animation" id="link4" data-magellan-target="link4">
 +
                <div class="small-12 large-6 columns inner-text-container slide-in-right">
 +
                     <img src="https://static.igem.org/mediawiki/2016/7/7f/T--USTC-Software--MainPageBioBrick.png">
 
                     <h3 class="inner-text">some image</h3>
 
                     <h3 class="inner-text">some image</h3>
 
                 </div>
 
                 </div>
−
                 <div class="small-12 large-5 columns" id="text2">
+
                 <div class="small-12 large-5 columns silde-in-left">
−
                     <p>Cow fatback short loin, hamburger speck jowl turducken capicola ham hock. Hamburger corned beef strip steak shank filet mignon, jerky capicola chicken jowl ribeye pork ham hock ground round bresaola. Jowl ribeye kielbasa drumstick pork belly leberkas. Spare ribs fatback shankle, hamburger meatloaf sausage pork loin andouille pork kielbasa. Pancetta shank tongue, leberkas turducken shoulder rump meatball pork belly pig hamburger brisket biltong. Tenderloin short ribs pig, rump tail chuck turducken.</p>
+
                     <h2 style="text-align:center;color:#953543">BioBrick</h2>
−
                     <p>Cow tri-tip pork loin salami corned beef. T-bone turkey ham frankfurter, brisket cow chicken bacon rump sirloin. Pancetta ribeye salami leberkas speck shank. Ribeye prosciutto swine venison speck beef.</p>
+
                     <p>Good searching engine, for good Bricks. Searching with various kinds of keywords.</p>
−
                     <p>Sirloin venison bresaola andouille pastrami short ribs. Short loin cow capicola tail ham hock leberkas. Frankfurter meatloaf capicola, swine ball tip jerky pork loin pork belly cow ribeye brisket strip steak jowl beef ribs ham hock. Pastrami ham hock rump turkey, pork belly capicola jerky. Turkey chuck beef, bresaola filet mignon jerky tri-tip pastrami. Bacon capicola jowl fatback short ribs. Speck shankle bacon chuck.</p>
+
                     <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_Biobrick_manager">Learn More</a>
 
                 </div>
 
                 </div>
 
             </div>
 
             </div>
−
             <div class="row" id="link4" data-magellan-target="link4">
+
             <div class="row animation" id="link5" data-magellan-target="link5">
−
                 <div class="small-12 columns">
+
                 <div class="small-12 large-5 columns">
−
                     <h2 style="text-align:center;color:#953543">Get robustness and sensitivity analysis</h2>
+
                     <h2 style="text-align:center;">ABACUS</h2>
 +
                    <p>Design better new protein,and rescue biologists from repetitive and useless experiments.</p>
 +
                    <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_ABACUS">Learn More</a>
 
                 </div>
 
                 </div>
−
                 <div class="small-12 columns">
+
                 <div class="small-12 large-6 columns inner-text-container">
−
                     <p>Sirloin venison bresaola andouille pastrami short ribs. Short loin cow capicola tail ham hock leberkas. Frankfurter meatloaf capicola, swine ball tip jerky pork loin pork belly cow ribeye brisket strip steak jowl beef ribs ham hock. Pastrami ham hock rump turkey, pork belly capicola jerky. Turkey chuck beef, bresaola filet mignon jerky tri-tip pastrami. Bacon capicola jowl fatback short ribs. Speck shankle bacon chuck.</p>
+
                     <img src="https://static.igem.org/mediawiki/2016/thumb/5/5c/T--USTC-Software--MainPageABACUS.png/600px-T--USTC-Software--MainPageABACUS.png.jpeg">
−
                    <p>Pork loin tail pork belly shank ham. Kielbasa venison ham, short loin ham hock beef ribs tri-tip ball tip pork belly. Ribeye sirloin sausage tenderloin hamburger. Strip steak tongue turkey, andouille bacon beef ribs venison. T-bone ball tip bresaola fatback, ground round meatball chicken sausage tongue pork chop leberkas sirloin jerky shank bacon. Turducken sirloin cow shankle pig, leberkas venison boudin pastrami.</p>
+
                     <h3 class="inner-text">some image</h3>
−
                    <p>Cow fatback short loin, hamburger speck jowl turducken capicola ham hock. Hamburger corned beef strip steak shank filet mignon, jerky capicola chicken jowl ribeye pork ham hock ground round bresaola. Jowl ribeye kielbasa drumstick pork belly leberkas. Spare ribs fatback shankle, hamburger meatloaf sausage pork loin andouille pork kielbasa. Pancetta shank tongue, leberkas turducken shoulder rump meatball pork belly pig hamburger brisket biltong. Tenderloin short ribs pig, rump tail chuck turducken.
+
−
                    </p>
+
−
                    <p>Cow tri-tip pork loin salami corned beef. T-bone turkey ham frankfurter, brisket cow chicken bacon rump sirloin. Pancetta ribeye salami leberkas speck shank. Ribeye prosciutto swine venison speck beef.</p>
+
−
                     <p>Biltong pastrami kielbasa short ribs, turducken shoulder pork chop boudin ground round speck cow. Fatback leberkas shank hamburger, tail pork belly tongue bresaola short ribs corned beef speck tri-tip ribeye. Filet mignon shoulder speck pastrami. Ham hock turducken corned beef shankle. Meatloaf shankle sausage boudin, shank flank turducken tenderloin pancetta ball tip. Biltong boudin jowl drumstick pig.</p>
+
−
                    <p>Sirloin venison bresaola andouille pastrami short ribs. Short loin cow capicola tail ham hock leberkas. Frankfurter meatloaf capicola, swine ball tip jerky pork loin pork belly cow ribeye brisket strip steak jowl beef ribs ham hock. Pastrami ham hock rump turkey, pork belly capicola jerky. Turkey chuck beef, bresaola filet mignon jerky tri-tip pastrami. Bacon capicola jowl fatback short ribs. Speck shankle bacon chuck.</p>
+
 
                 </div>
 
                 </div>
 
             </div>
 
             </div>
−
             <div class="row" id="link5" data-magellan-target="link5">
+
             <div class="row animation" id="link6" data-magellan-target="link6">
−
                 <div class="small-12 columns">
+
                 <div class="small-12 large-6 columns inner-text-container slide-in-right">
−
                     <h2 style="text-align:center;">Get the DNA sequence!</h2>
+
                     <img src="https://static.igem.org/mediawiki/2016/e/ef/T--USTC-Software--blast0.jpg">
 +
                    <h3 class="inner-text">some image</h3>
 
                 </div>
 
                 </div>
−
                 <div class="col-md-10">
+
                 <div class="small-12 large-5 columns silde-in-left">
−
                     <p>Pork loin tail pork belly shank ham. Kielbasa venison ham, short loin ham hock beef ribs tri-tip ball tip pork belly. Ribeye sirloin sausage tenderloin hamburger. Strip steak tongue turkey, andouille bacon beef ribs venison. T-bone ball tip bresaola fatback, ground round meatball chicken sausage tongue pork chop leberkas sirloin jerky shank bacon. Turducken sirloin cow shankle pig, leberkas venison boudin pastrami.</p>
+
                     <h2 style="text-align:center;color:#953543">Blast</h2>
−
                     <p>Cow fatback short loin, hamburger speck jowl turducken capicola ham hock. Hamburger corned beef strip steak shank filet mignon, jerky capicola chicken jowl ribeye pork ham hock ground round bresaola. Jowl ribeye kielbasa drumstick pork belly leberkas. Spare ribs fatback shankle, hamburger meatloaf sausage pork loin andouille pork kielbasa. Pancetta shank tongue, leberkas turducken shoulder rump meatball pork belly pig hamburger brisket biltong. Tenderloin short ribs pig, rump tail chuck turducken.
+
                     <p>Blast Give You An Enjoyable Experience</p>
−
                    </p>
+
                     <a href="https://2016.igem.org/Team:USTC-Software/Description#Module_BLAST">Learn More</a>
−
                     <p>Cow tri-tip pork loin salami corned beef. T-bone turkey ham frankfurter, brisket cow chicken bacon rump sirloin. Pancetta ribeye salami leberkas speck shank. Ribeye prosciutto swine venison speck beef.</p>
+
 
                 </div>
 
                 </div>
 
             </div>
 
             </div>
−
             <div class="img-fixed-position content-container" style="background-image:url(http://placehold.it/1080x600);">
+
             <div class="row animation" id="link7" data-magellan-target="link7">
−
            </div>
+
                 <div class="small-12 large-12 columns silde-in-left">
−
            <div class="row">
+
                     <a href="https://2016.igem.org/Team:USTC-Software/Installation"><h2 style="text-align:center">Try It Now!</h2></a>
−
                 <div class="small-12 columns">
+
−
                     <p>Biltong pastrami kielbasa short ribs, turducken shoulder pork chop boudin ground round speck cow. Fatback leberkas shank hamburger, tail pork belly tongue bresaola short ribs corned beef speck tri-tip ribeye. Filet mignon shoulder speck pastrami. Ham hock turducken corned beef shankle. Meatloaf shankle sausage boudin, shank flank turducken tenderloin pancetta ball tip. Biltong boudin jowl drumstick pig.</p>
+
−
                    <p>Sirloin venison bresaola andouille pastrami short ribs. Short loin cow capicola tail ham hock leberkas. Frankfurter meatloaf capicola, swine ball tip jerky pork loin pork belly cow ribeye brisket strip steak jowl beef ribs ham hock. Pastrami ham hock rump turkey, pork belly capicola jerky. Turkey chuck beef, bresaola filet mignon jerky tri-tip pastrami. Bacon capicola jowl fatback short ribs. Speck shankle bacon chuck.</p>
+
−
                    <p> Users have the freedom to drag specific BioBricks on our canvas and combine them into a functional gene circuit. Then the DNA sequence and other information of the designed circuit are available for users to check and download.</p>
+
−
                    <p>
+
−
                        Wet lab protocols are partly incorporated into our DNA sequences which may make the design better and applicable in laboratories.
+
−
                    </p>
+
 
                 </div>
 
                 </div>
 
             </div>
 
             </div>
 +
            <footer class="row">
 +
                <div class="column small-8 small-offset-2 large-4 large-offset-2 ar1">
 +
                    <h2>Links</h2>
 +
                    <p><a href="http://www.ustc.edu.cn">USTC</a></p>
 +
                    <p><a href="https://2014.igem.org/Team:USTC-Software">Biopano</a></p>
 +
                    <p>&nbsp;</p>
 +
                </div>
 +
                <div class="column small-8 small-offset-2 large-4 large-offset-0 end ar2">
 +
                    <h2>Contact Us</h2>
 +
                    <p>96, Jinzhai RD.</p>
 +
                    <p>Baohe DST.</p>
 +
                    <p>Hefei, Anhui, PRC</p>
 +
                    <p>&nbsp;</p>
 +
                </div>
 +
            </footer>
 
         </section>
 
         </section>
 
     </main>
 
     </main>

Latest revision as of 03:56, 20 October 2016

Menu

Welcome to BioHub!

Biohub is a software tool for synthetic biologists developed by USTC-Software. It aims at helping synthetic biologists to deal with data from different types such as regulatory proteins, regulatory elements in gene expression.

Biohub is done using an extensive plug-in system with some handy utility such as pathway-finding, one key blast and quick query. Users can have their own personalized Biohub according to their need.

Learn More

some image

some image

Simulation

See the detailed structure of a designed gene circuit.

Simulation for biology processes, especially unstable ones, and making everything beautiful and clear.

Learn More

Pathway Finder

Pathway finder is a module integrated in the pano to provide faster and more convenient ways to find paths from a specific source node to another target node, select appropriate paths, and add them to the pano.

Learn More

some image

some image

BioBrick

Good searching engine, for good Bricks. Searching with various kinds of keywords.

Learn More

ABACUS

Design better new protein,and rescue biologists from repetitive and useless experiments.

Learn More

some image

some image

Blast

Blast Give You An Enjoyable Experience

Learn More

Links

USTC

Biopano

 

Contact Us

96, Jinzhai RD.

Baohe DST.

Hefei, Anhui, PRC