Difference between revisions of "Template:UPMC-Paris/Test"

 
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<li class="menu_item"> <div class="icon plus"></div> Competent Cells :
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<li class="menu_item"> <div class="icon plus"></div> Competent Cells
 
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<h>Preparation of Bacillus subtilis competent cells</h>
 
<h>Preparation of Bacillus subtilis competent cells</h>
  
<ol>1.Streak out the strain to be made competent on an LB agar plate as a large patch and incubate overnight at 30°C</ol>
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<ol><li>Streak out the strain to be made competent on an LB agar plate as a large patch and incubate overnight at 30°C</li>
  
<ol>2. The following morning scrape the cell growth off the plate and use to inoculate fresh, pre-warmed, SpC medium (20 ml) to give an OD600 reading of about 0.5. </ol>
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<li>The following morning scrape the cell growth off the plate and use to inoculate fresh, pre-warmed, SpC medium (20 ml) to give an OD600 reading of about 0.5. </li>
  
<ol>3. Incubate the culture at 37°C with vigorous aeration and take periodic OD readings (OD600) to assess cell growth.</ol>
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<li>Incubate the culture at 37°C with vigorous aeration and take periodic OD readings (OD600) to assess cell growth.</li>
 
   
 
   
<ol>4. When the rate of cell growth is seen to depart from exponential (i.e. no significant change in cell density over 20-30 min) inoculate 200 ml of pre-warmed, SpII medium with 2 ml of stationary-phase culture and continue incubation at 37°C with slower aeration </ol>
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<li>When the rate of cell growth is seen to depart from exponential (i.e. no significant change in cell density over 20-30 min) inoculate 200 ml of pre-warmed, SpII medium with 2 ml of stationary-phase culture and continue incubation at 37°C with slower aeration </li>
  
<ol>5. After 90 min incubation, pellet the cells by centrifugation (8,000 g, 5min) at room temperature.</ol>
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<li>After 90 min incubation, pellet the cells by centrifugation (8,000 g, 5min) at room temperature.</li>
  
<ol>6. Carefully decant the supernatant into a sterile container and save.</ol>
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<li>Carefully decant the supernatant into a sterile container and save.</li>
  
<ol>7. Gently resuspended the cell pellet in 18 ml of the saved supernatant and add 2 ml of sterile glycerol; mix gently </ol>
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<li>Gently resuspended the cell pellet in 18 ml of the saved supernatant and add 2 ml of sterile glycerol; mix gently </li>
  
<ol>8. Aliquot the competent cell (0.5 ml) in sterile tubes, freeze rapidly in liquid nitrogen or a dry-iced/ethanol bath or ice/isopropanol bath and store -70.</ol>
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<li>Aliquot the competent cell (0.5 ml) in sterile tubes, freeze rapidly in liquid nitrogen or a dry-iced/ethanol bath or ice/isopropanol bath and store -70.</li></ol>
  
 
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<li class="menu_item"> <div class="icon plus"></div> Transformation :
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<li class="menu_item"> <div class="icon plus"></div> Transformation
 
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<h class="h2">Preparation</h>
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<h>Cells Preparation :</h>
  
<ol>1. Thaw competent cells rapidly by immersing frozen tubes in a 37°C water bath</ol>
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<ol><li>Thaw competent cells rapidly by immersing frozen tubes in a 37°C water bath</li>
  
<ol>2. Immediately, add one volume of SpII + EGTA to the Thawed cells; mix gently </ol>
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<li>Immediately, add one volume of SpII + EGTA to the Thawed cells; mix gently </li>
  
<ol>3. In a sterile test tube add competent cell (0.2~0.5 ml) to the DNA solution (<0.1 ml) and incubate in a roller drum at 37.</ol>
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<li>In a sterile test tube add competent cell (0.2~0.5 ml) to the DNA solution (<0.1 ml) and incubate in a roller drum at 37.</li>
  
<ol>4. Dilute the transformed cells as appropriate in T base containing 0.5% glucose and plate immediately onto selective media. </ol>
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<li>Dilute the transformed cells as appropriate in T base containing 0.5% glucose and plate immediately onto selective media. </li></ol>
  
 
<p align="center"><img src="https://static.igem.org/mediawiki/igem.org/d/d3/Transfo_pic_1.png" width="400px"/></p>
 
<p align="center"><img src="https://static.igem.org/mediawiki/igem.org/d/d3/Transfo_pic_1.png" width="400px"/></p>
 
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<h>Digestion</h>
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<h>Digestion :</h>
<ol><li>1. Select restriction enzymes to digest your plasmid. Determine an appropriate reaction buffer by reading the instructions for your enzyme. </li>
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<ol><li>Select restriction enzymes to digest your plasmid. Determine an appropriate reaction buffer by reading the instructions for your enzyme. </li>
 
<p>In a 1.5mL tube combine the following:</p>
 
<p>In a 1.5mL tube combine the following:</p>
<ul><li> - DNA </li>
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<ul><li>DNA </li>
<li>- Restriction Enzyme(s)</li>  
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<li>Restriction Enzyme(s)</li>  
<li>- Buffer </li>
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<li>Buffer </li>
<li>- dH2O up to total volume</li> </ul>
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<li>dH2O up to total volume</li> </ul>
 
<p>Mix gently by pipetting. </p>
 
<p>Mix gently by pipetting. </p>
  
<li>2. Incubate tube at appropriate temperature (usually 37°C) for 1 hour. </li>
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<li>Incubate tube at appropriate temperature (usually 37°C) for 1 hour. </li>
  
<li>3. Always follow the manufacturer’s instructions. </li>
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<li>Always follow the manufacturer’s instructions. </li>
  
<li>4. To visualize the results of your digest, conduct gel electrophoresis</li>
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<li>To visualize the results of your digest, conduct gel electrophoresis</li></ol>
 
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<h>Vector Preparation</h>
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<h>Vector Preparation :</h>
 
<p>Combine the following in a PCR or Eppendorf tube:</p>
 
<p>Combine the following in a PCR or Eppendorf tube:</p>
<ol>- 25ng Vector DNA</ol>
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<ul><li>25ng Vector DNA</li>
<ol>- 75ng Insert DNA</ol>
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<li>75ng Insert DNA</li>
<ol>- Ligase Buffer (1μL/10μL reaction for 10X buffer, and 2μL/10μL reaction for 5X buffer)</ol>
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<li>Ligase Buffer (1μL/10μL reaction for 10X buffer, and 2μL/10μL reaction for 5X buffer)</li>
<ol>- 0.5-1μL T4 DNA Ligase</ol>
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<li>0.5-1μL T4 DNA Ligase</li>
<ol>- H20 to a total of 10μL</ol>
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<li>H20 to a total of 10μL</li></ul>
 
<p>Incubate at room temperature for 2hr, or at 16°C overnight (following the manufacturer’s instructions).</p>
 
<p>Incubate at room temperature for 2hr, or at 16°C overnight (following the manufacturer’s instructions).</p>
  
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<li class="menu_item"> <div class="icon plus"></div> Deletion :
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<li class="menu_item"> <div class="icon plus"></div> Deletion
 
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<li class="menu_item"> <div class="icon plus"></div> Other :
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<li class="menu_item"> <div class="icon plus"></div> Other
 
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Latest revision as of 15:07, 29 July 2016

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