Difference between revisions of "Team:IIT Kharagpur"

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{{IIT_Kharagpur}}
 
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<h1 class="text-center"><b>PROJECT DESCRIPTION</b></h1>
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<h5 class="text-center" > Our this year project idea is production of spider silk from <b>E.coli</b></h5>
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<div class="well">
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<h4 class="text-left"><b>SPIDER SILK</b></h4>
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<p> Humans and silk have been intertwined together for a long time now. We have seen it
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around nearly everywhere, be it in your clothes or be it from Spiderman’s web shooters!
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This silk has immense potential hidden in its threads. We are all familiar with silkworm
 +
silk. It’s a well­studied and developed industry. What we are concentrating on however
 +
is spider silk. Spider silk has many applications. Its unique properties of strength, elasticity and well as being lightweight allow it to be an excellent biomaterial. It can beused to forge artificial tendons and ligaments, or even bridge cables. It’s the stuff that can be used to make air bags, cords for parachute or even body armour. Along with
 +
this, spider silk has low immunogenicity, thus making it an ideal candidate for
 +
biomedical applications such as drug delivery systems and scaffolds for tissue
 +
engineering. Cultivating silkworms may not be such a headache but these spiders put
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up a lot of fight. So we need some way in which this can be done on an industrial scale.
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</p>
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<h4 class="text-left"><b>BACTERIAL SILK</b></h4>
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<p>
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As we are all aware, the microbes that grow on everything around us can grow at
 +
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amazing rate. Not only that, but they can be made to synthesize proteins of our interest
 +
 +
with a little genetic tweaking. This brings us to our project. We aim at synthesizing
 +
 +
recombinant spider silk protein (MaSp2) in E. coli along with a system to effectively
 +
 +
deliver it outside the cell. There have been advances in synthesizing spider silk in
 +
 +
bacteria. Some of them by previous iGEM teams themselves. But the successful ideas
 +
 +
have involved lysis of the bacterial cells to get to the protein. We would like to combine
 +
 +
one of these successful efforts with a secretion system. This will allow us to produce the
 +
 +
silk protein, and then reuse the cells for more of the same.
 +
</p>
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<h4 class="text-center "> <b>OUR IDEA</b> </h4>
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<p>
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Our idea hinges upon the use of a site specific retroviral protease. We aim at
 +
 +
synthesizing recombinant spider silk protein (MaSp2) in E. coli and anchoring it to the
 +
 +
outer cell membrane, followed by the cleavage of the same using a HIV1 aspartyl
 +
 +
protease. The silk protein will be fused to a fragment of OmpA protein that will display it
 +
 +
on outer surface of the E. coli. A HIV protease cleavage site will be introduced between
 +
 +
the OmpA fragment and the silk protein assembly. A second construct containing the
 +
 +
cleavage site and the HIV protease will be fused to the OmpA fragment. Induction of the
 +
 +
second protein construct will initiate cleavage by the protease in cis that will release the
 +
 +
protease and allow it to cleave in trans and release the spider silk protein.
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</p>
 
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<h5> Editing your wiki </h5>
 
<h5> Editing your wiki </h5>
 
<p>On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world! </p>  
 
<p>On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world! </p>  
<p> <a href="https://2016.igem.org/wiki/index.php?title=Team:Example&action=edit"> Click here to edit this page! </a></p>
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<p> <a href="https://2016.igem.org/wiki/index.php?title=Team:Example&action=edit"> </a>Use WikiTools - Edit in the black menu bar to edit this page</p>
  
 
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<h5> Uploading pictures and files </h5>
 
<h5> Uploading pictures and files </h5>
 
<p> You can upload your pictures and files to the iGEM 2016 server. Remember to keep all your pictures and files within your team's namespace or at least include your team's name in the file name. <br />
 
<p> You can upload your pictures and files to the iGEM 2016 server. Remember to keep all your pictures and files within your team's namespace or at least include your team's name in the file name. <br />
When you upload, set the "Destination Filename" to <code>Team:YourOfficialTeamName/NameOfFile.jpg</code>. (If you don't do this, someone else might upload a different file with the same "Destination Filename", and your file would be erased!)</p>
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When you upload, set the "Destination Filename" to <br><code>T--YourOfficialTeamName--NameOfFile.jpg</code>. (If you don't do this, someone else might upload a different file with the same "Destination Filename", and your file would be erased!)</p>
  
  
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Revision as of 19:58, 30 June 2016

PROJECT DESCRIPTION

Our this year project idea is production of spider silk from E.coli

SPIDER SILK

Humans and silk have been intertwined together for a long time now. We have seen it around nearly everywhere, be it in your clothes or be it from Spiderman’s web shooters! This silk has immense potential hidden in its threads. We are all familiar with silkworm silk. It’s a well­studied and developed industry. What we are concentrating on however is spider silk. Spider silk has many applications. Its unique properties of strength, elasticity and well as being lightweight allow it to be an excellent biomaterial. It can beused to forge artificial tendons and ligaments, or even bridge cables. It’s the stuff that can be used to make air bags, cords for parachute or even body armour. Along with this, spider silk has low immunogenicity, thus making it an ideal candidate for biomedical applications such as drug delivery systems and scaffolds for tissue engineering. Cultivating silkworms may not be such a headache but these spiders put up a lot of fight. So we need some way in which this can be done on an industrial scale.

BACTERIAL SILK

As we are all aware, the microbes that grow on everything around us can grow at amazing rate. Not only that, but they can be made to synthesize proteins of our interest with a little genetic tweaking. This brings us to our project. We aim at synthesizing recombinant spider silk protein (MaSp2) in E. coli along with a system to effectively deliver it outside the cell. There have been advances in synthesizing spider silk in bacteria. Some of them by previous iGEM teams themselves. But the successful ideas have involved lysis of the bacterial cells to get to the protein. We would like to combine one of these successful efforts with a secretion system. This will allow us to produce the silk protein, and then reuse the cells for more of the same.

OUR IDEA

Our idea hinges upon the use of a site specific retroviral protease. We aim at synthesizing recombinant spider silk protein (MaSp2) in E. coli and anchoring it to the outer cell membrane, followed by the cleavage of the same using a HIV1 aspartyl protease. The silk protein will be fused to a fragment of OmpA protein that will display it on outer surface of the E. coli. A HIV protease cleavage site will be introduced between the OmpA fragment and the silk protein assembly. A second construct containing the cleavage site and the HIV protease will be fused to the OmpA fragment. Induction of the second protein construct will initiate cleavage by the protease in cis that will release the protease and allow it to cleave in trans and release the spider silk protein.

Welcome to iGEM 2016!

Your team has been approved and you are ready to start the iGEM season!

Before you start:

Please read the following pages:

Styling your wiki

You may style this page as you like or you can simply leave the style as it is. You can easily keep the styling and edit the content of these default wiki pages with your project information and completely fulfill the requirement to document your project.

While you may not win Best Wiki with this styling, your team is still eligible for all other awards. This default wiki meets the requirements, it improves navigability and ease of use for visitors, and you should not feel it is necessary to style beyond what has been provided.

Wiki template information

We have created these wiki template pages to help you get started and to help you think about how your team will be evaluated. You can find a list of all the pages tied to awards here at the Pages for awards link. You must edit these pages to be evaluated for medals and awards, but ultimately the design, layout, style and all other elements of your team wiki is up to you!

Editing your wiki

On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world!

Use WikiTools - Edit in the black menu bar to edit this page

Tips

This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started:

  • State your accomplishments! Tell people what you have achieved from the start.
  • Be clear about what you are doing and how you plan to do this.
  • You have a global audience! Consider the different backgrounds that your users come from.
  • Make sure information is easy to find; nothing should be more than 3 clicks away.
  • Avoid using very small fonts and low contrast colors; information should be easy to read.
  • Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the iGEM 2016 calendar
  • Have lots of fun!
Inspiration

You can also view other team wikis for inspiration! Here are some examples:

Uploading pictures and files

You can upload your pictures and files to the iGEM 2016 server. Remember to keep all your pictures and files within your team's namespace or at least include your team's name in the file name.
When you upload, set the "Destination Filename" to
T--YourOfficialTeamName--NameOfFile.jpg. (If you don't do this, someone else might upload a different file with the same "Destination Filename", and your file would be erased!)

UPLOAD FILES