Difference between revisions of "Team:William and Mary"

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{{William_and_Mary}}
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{{Team:William_and_Mary/CSS_RESET}}
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<html>
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<head>
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<html lang="en">
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<link href="https://fonts.googleapis.com/css?family=Open+Sans" rel="stylesheet">
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<cfheader name="X-XSS-Protection" value="1">
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</head>
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    <head>
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        <meta charset="utf-8" />
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        <link rel="icon" type="image/png" href="assets/img/favicon.ico">
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        <meta http-equiv="X-UA-Compatible" content="IE=edge,chrome=1" />
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        <title>William & Mary</title>
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        <meta content='width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=0' name='viewport' />
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        <link href="https://2016.igem.org/Team:William_and_Mary/bootstrap?action=raw&amp;ctype=text/css" rel="stylesheet" />
 +
<link href="https://2016.igem.org/Team:William_and_Mary/fixbootstrap?action=raw&amp;ctype=text/css" rel="stylesheet" type="text/css"/>
 +
        <link href="https://2016.igem.org/Team:William_and_Mary/rubik?action=raw&amp;ctype=text/css" rel="stylesheet"/>
 +
        <link href="https://2016.igem.org/Team:William_and_Mary/demo?action=raw&amp;ctype=text/css" rel="stylesheet"/>
 +
        <link href="https://2016.igem.org/Team:William_and_Mary/jsquerybxslidercss?action=raw&amp;ctype=text/css" rel="stylesheet"/>
 +
 +
        <!--    Fonts and icons    -->
 +
        <link href="https://2016.igem.org/Team:William_and_Mary/font-awesome?action=raw&amp;ctype=text/css" rel="stylesheet"/>
 +
        <link href='https://2016.igem.org/Team:William_and_Mary/droid-serif?action=raw&amp;ctype=text/css' rel='stylesheet' type='text/css'/>
 +
        <link href="https://2016.igem.org/Team:William_and_Mary/pe-icon-7stroke?action=raw&amp;ctype=text/css" rel="stylesheet"/>
 +
        <link href="https://2016.igem.org/Team:William_and_Mary/Rubik-Fonts?action=raw&amp;ctype=text/css" rel="stylesheet" />
 +
       
 +
<!-- the wiki settings in the section immediately below are from UC San Diego 2015 -->
 +
<!-- fixed by J-Mitch of W&M -->
  
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<div class = "column full_size">
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<style type="text/css">
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<h2> Project Description </h2>
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/* WIKI SETTINGS*/
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<p><b>WM iGEM 2016 Presents: The Circuit Control Toolbox.</b></p>
+
−
<p>Genetic circuits can be described according to their input-output relation by using a Transfer Function, which plots the concentration of output protein with respect to concentrations of input molecule. Such functions are well-modeled by Hill Functions, and as such have three parameters: the hill coefficient n, the half-max concentration K, and the saturation level V. These mathematical parameters correspond to the physical circuit properties of response steepness, input sensitivity, and maximal response level, respectively, in addition to the emergent properties which arise from their combinatorial modification.</p>
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/* Hide first heading */
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<p>We present a toolbox of BioBrick parts that will allow for the modification of the Transfer Functions of arbitrary circuits via the incorporation of these parts into the final steps of the circuit. These parts include Decoy Binding Arrays, which buffer the sensitivity of the circuit to low levels of input concentration, promoters driven by synthetic enhancers to allow the circuit to reach up to four levels of discrete output levels, and a suite of ribosome binding sites to modulate the circuit's total output level. Our parts are all buffered by the inclusion of characterized ribozymes downstream of the promoter, in order to insulate the specific circuit component's transfer function from the choice of expressed protein, allowing for greater orthogonality and modularity in our toolbox components.</p>
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.firstHeading {
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<p>In addition to creating, characterizing, and submitting these Toolbox parts to the Registry, we will also create a Circuit Toolbox Calculator which experimenters can use to navigate the high-dimensional space of possible Transfer Function modifications. Experimenters who have built a genetic circuit will input two transfer functions: their empirical observations of the circuit's response at different input molecule concentrations, and a desired transfer function for their modified circuit. The calculator then finds the optimal match to the target function by iterating through the possible modifications to the empirical transfer function through the parts in our Toolbox, returning to the user a list of Toolbox parts and small-molecule inducer concentrations that will replicate this best-match function <i>in vitro</i>. These calculations will be based on both theoretical and observational insights from mechanistic models and kinetic simulations of the interactions between our Toolbox components and arbitrary genetic circuits.</p>
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display: none;
 +
}
 +
/* Visited hyperlinks */
 +
                        a:visited{
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                                color: #393d31;
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                        }
  
 +
/*-- Remove borders, float content left and remove padding/margin */
 +
#globalWrapper, #content{
 +
background-color: transparent;
 +
border: none;
 +
float: center;
 +
                                width: 100.15%; /* found to be the magic number (: */
 +
margin-left: -3px;
 +
margin-top: -8px;
 +
padding: auto;
 +
}
  
−
<div class="column full_size" >
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/*left align Black Menu Bar */
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<img src="http://placehold.it/800x300/d3d3d3/f2f2f2">
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#top_menu_inside {
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</div>
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margin-left: 0px;
 +
}
 +
.centerImage
 +
{
 +
text-align:center;
 +
display:block;
 +
}
 +
.wraptocenter {
 +
  display: table-cell;
 +
  text-align: center;
 +
  vertical-align: middle;
 +
  width: 200px;
 +
  height: 200px;
 +
  background-color: #999;
 +
}
 +
.wraptocenter * {
 +
  vertical-align: middle;
 +
}
 +
</style>
  
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<div class="column full_size" >
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    </head>
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<h2> Welcome to iGEM 2016! </h2>
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    <body class="landing-page">
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<p>Your team has been approved and you are ready to start the iGEM season! </p>
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<!--
 +
        <div class="loading ">
 +
            <div class="loading-container">
 +
                <p>loading...</p>
 +
                <img class="loader" src="assets/img/rubik.svg"/>
 +
            </div>
 +
        </div>
 +
-->
 +
        <nav class="navbar navbar-default navbar-transparent navbar-fixed-top" role="navigation">
 +
            <!-- if you want to keep the navbar hidden you can add this class to the navbar "navbar-burger"-->
 +
            <div class="container">
 +
                <div class="navbar-header">
 +
                    <button id="menu-toggle" type="button" class="navbar-toggle" data-toggle="collapse" data-target="#example">
 +
                    <span class="sr-only">Toggle navigation</span>
 +
                    <span class="icon-bar bar1"></span>
 +
                    <span class="icon-bar bar2"></span>
 +
                    <span class="icon-bar bar3"></span>
 +
                    </button>
 +
                    <a class="navbar-brand">
 +
                    William & Mary
 +
                    </a>
 +
                </div>
 +
                <div class="collapse navbar-collapse">
 +
                    <ul class="nav navbar-nav navbar-right navbar-uppercase">
 +
                        <li class="social-links">
 +
                            <a href="https://www.facebook.com/WMiGEM16/?fref=ts">
 +
                            <i class="fa fa-facebook"></i>
 +
                            </a>
 +
                            <a href="https://twitter.com/wmigem">
 +
                            <i class="fa fa-twitter"></i>
 +
</a>
 +
<!--
 +
                            <a href="#">
 +
                            <i class="fa fa-instagram"></i>
 +
                            </a>
 +
-->
 +
                        </li>
 +
                        <li>
 +
                            <a href="template.html">
 +
                            Overview
 +
                            </a>
 +
                        </li>
 +
                        <li>
 +
                            <a href="description.html">
 +
                            Description
 +
                            </a>
 +
                        </li>
 +
                        <li>
 +
                            <a href="" data-scroll="true" data-id="#projects">
 +
                            Parts
 +
                            </a>
 +
                        </li>
 +
                        <li>
 +
                            <a href="" data-scroll="true" data-id="#clients">
 +
                            Results
 +
                            </a>
 +
                        </li>
 +
                        <li>
 +
                            <a href="" data-scroll="true" data-id="#team">
 +
                            Modeling
 +
                            </a>
 +
                        </li>
 +
                        <li>
 +
                            <a href="" data-scroll="true" data-id="#numbers">
 +
                            Collaboration
 +
                            </a>
 +
                        </li>
 +
                        <li>
 +
                            <a href="" data-scroll="true" data-id="#contact">
 +
                            Team
 +
                            </a>
 +
                        </li>
 +
                    </ul>
 +
                </div>
 +
            </div>
 +
        </nav>
 +
       
 +
       
 +
       
 +
       
 +
       
 +
       
 +
        <div class="wrapper">
 +
       
 +
<!--PRESENTATION PAGE INFORMATION BEGINS HERE-->
  
−
</div>  
+
<div class="section section-header" id="overview">
 +
<div class="parallax pattern-image filter filter-gradient-purple" data-color="gold">
 +
<img alt="..." src="https://static.igem.org/mediawiki/2016/c/ce/T--William_and_Mary--rubik-background.jpg">
 +
<div class="container">
 +
<div class="content">
 +
<p class="section-header h1WM" style="font-family:Slim-Joe; margin: 30px 0 15px;">Circuit Control</p>
 +
<div class="separator-container">
 +
<div class="separator line-separator">✻</div>
 +
</div>
 +
<h5>creating a toolbox allowing for precision circuit control</h5>
 +
</div>
 +
</div>
 +
</div>
 +
<a href="" data-scroll="true" data-id="#description" class="scroll-arrow hidden-xs hidden-sm">
 +
<i class="fa fa-angle-down"></i>
 +
</a>
 +
</div>
  
−
<div class="column half_size" >
+
<div class="section section-we-are-1" id="description">
−
<h5>Before you start: </h5>
+
<div class="text-area">
−
<p> Please read the following pages:</p>
+
<div class="container">
−
<ul>
+
<div class="row">
−
<li> <a href="https://2016.igem.org/Requirements">Requirements page </a> </li>
+
<div class="title">
−
<li> <a href="https://2016.igem.org/Wiki_How-To">Wiki Requirements page</a></li>
+
<p class="h2WM">Project "abstract" here</p>
−
<li> <a href="https://2016.igem.org/Resources/Template_Documentation"> Template Documentation </a></li>
+
<div class="separator-container">
−
</ul>
+
<div class="separator line-separator">✻</div>
−
</div>
+
</div>
 +
<p class="large">
 +
What have we done this year, + pictures that can be scrolled through
 +
in the 'carousel' below.
 +
</p>
 +
</div>
 +
</div>
 +
</div>
 +
</div>
 +
<div id="carousel">
 +
<div id="section-we-are-1" class="carousel slide add-animation-stopped-1" data-interval="20000">
 +
<!-- Wrapper for slides -->
 +
<div class="carousel-inner pattern-image animate">
 +
<div class="item  active">
 +
<img alt="..." class="full-image" src="assets/img/builder/projects/project.jpg">
 +
</div>
 +
<div class="item">
 +
<img alt="..." class="full-image" src="assets/img/builder/projects/project.jpg">
 +
</div>
 +
</div>
 +
<!-- Controls -->
 +
<a class="left carousel-control" href="#section-we-are-1" data-slide="prev"><span class="fa fa-angle-left hidden-md hidden-lg"></span></a>     
 +
<a class="right carousel-control" href="#section-we-are-1" data-slide="next"><span class="fa fa-angle-right hidden-ms hidden-lg"></span></a>    
 +
</div>
 +
</div>
 +
</div>
  
−
<div class="column half_size" >
+
<!-- Section "What We do" example 4: Big Title & 4 columns icons -->
−
<div class="highlight">
+
<div class="section section-we-do-2" id="workflow2">
−
<h5> Styling your wiki </h5>
+
<div class="container">
−
<p>You may style this page as you like or you can simply leave the style as it is. You can easily keep the styling and edit the content of these default wiki pages with your project information and completely fulfill the requirement to document your project.</p>
+
<div class="row">
−
<p>While you may not win Best Wiki with this styling, your team is still eligible for all other awards. This default wiki meets the requirements, it improves navigability and ease of use for visitors, and you should not feel it is necessary to style beyond what has been provided.</p>  
+
<div class="title">
−
</div>
+
<h5 class="text-gray">Big Title &amp; 4 Columns Icons</h5>
−
</div>
+
<h2>filler title</h2>
 +
<div class="separator-container">
 +
<div class="separator line-separator">✻</div>
 +
</div>
 +
<p>
 +
I don't know what can go here, something cool I guess
 +
</p>
 +
</div>
 +
<div class="col-md-3">
 +
<div class="card">
 +
<div class="icon">
 +
<i class="pe-7s-piggy"></i>
 +
</div>
 +
<h3>section</h3>
 +
<p>text below that section</p>
 +
</div>
 +
</div>
 +
<div class="col-md-3">
 +
<div class="card">
 +
<div class="icon">
 +
<i class="pe-7s-headphones"></i>
 +
</div>
 +
<h3>ugh</h3>
 +
<p>so much filler text wow</p>
 +
</div>
 +
</div>
 +
<div class="col-md-3">
 +
<div class="card">
 +
<div class="icon">
 +
<i class="pe-7s-pen"></i>
 +
</div>
 +
<h3>kvndkvkldsv</h3>
 +
<p>ipsum lorem dolor</p>
 +
</div>
 +
</div>
 +
<div class="col-md-3">
 +
<div class="card">
 +
<div class="icon">
 +
<i class="pe-7s-plugin"></i>
 +
</div>
 +
<h3>:(</h3>
 +
<p>:-) :-) :-)</p>
 +
</div>
 +
</div>
 +
</div>
 +
</div>
 +
</div>
 +
<!-- End Section "What We do" example 3: Small Title & 3 columns icons -->
  
−
<div class="column full_size" >
+
<!-- Section "Our Projects" example 5: Single Line Photos -->
−
<h5> Wiki template information </h5>
+
<div class="section section-we-made-2 section-with-hover" id="projects2">
−
<p>We have created these wiki template pages to help you get started and to help you think about how your team will be evaluated. You can find a list of all the pages tied to awards here at the <a href="https://2016.igem.org/Judging/Pages_for_Awards/Instructions">Pages for awards</a> link. You must edit these pages to be evaluated for medals and awards, but ultimately the design, layout, style and all other elements of your team wiki is up to you!</p>
+
<div class="projects" style="overflow: hidden;">
−
 
+
<div class="text-area">
−
</div>  
+
<div class="title">
−
 
+
<h5 class="text-gray">Example No.5</h5>
−
 
+
<h2>Projects section</h2>
−
 
+
<div class="separator-container">
−
 
+
<div class="separator line-separator">✻</div>
−
<div class="column half_size" >
+
</div>
−
<h5> Editing your wiki </h5>
+
</div>
−
<p>On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world! </p>  
+
</div>
−
<p> <a href="https://2016.igem.org/wiki/index.php?title=Team:Example&action=edit"> </a>Use WikiTools - Edit in the black menu bar to edit this page</p>
+
<div class="info">
−
 
+
<p class="text-center text-gray">more project stuff yay</p>
−
</div>
+
</div>
−
 
+
<div class="row scroller" style="transform: translateX(-597px);">
−
 
+
<div class="col-lg-3 col-md-6 col-sm-6">
−
<div class="column half_size" >
+
<div class="project">
−
<h5>Tips</h5>
+
<img alt="..." src="assets/img/builder/projects/project.jpg">
−
<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
+
</div>
−
<ul>
+
</div>
−
<li>State your accomplishments! Tell people what you have achieved from the start. </li>
+
<div class="col-lg-3 col-md-6 col-sm-6">
−
<li>Be clear about what you are doing and how you plan to do this.</li>
+
<div class="project">
−
<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
+
<img alt="..." src="assets/img/builder/projects/project.jpg">
−
<li>Make sure information is easy to find; nothing should be more than 3 clicks away.  </li>
+
</div>
−
<li>Avoid using very small fonts and low contrast colors; information should be easy to read.  </li>
+
</div>
−
<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="https://2016.igem.org/Calendar">iGEM 2016 calendar</a> </li>
+
<div class="col-lg-3 col-md-6 col-sm-6">
−
<li>Have lots of fun! </li>
+
<div class="project">
−
</ul>  
+
<img alt="..." src="assets/img/builder/projects/project.jpg">
−
</div>
+
</div>
−
 
+
</div>
−
 
+
<div class="col-lg-3 col-md-6 col-sm-6">
−
<div class="column half_size" >
+
<div class="project">
−
<h5>Inspiration</h5>
+
<img alt="..." src="assets/img/builder/projects/project.jpg">
−
<p> You can also view other team wikis for inspiration! Here are some examples:</p>
+
<a class="over-area color-black" href="#" target="_blank">
−
<ul>
+
<div class="content">
−
<li> <a href="https://2014.igem.org/Team:SDU-Denmark/"> 2014 SDU Denmark </a> </li>
+
<h4>this is</h4>
−
<li> <a href="https://2014.igem.org/Team:Aalto-Helsinki">2014 Aalto-Helsinki</a> </li>
+
<p>a really cool website I think</p>
−
<li> <a href="https://2014.igem.org/Team:LMU-Munich">2014 LMU-Munich</a> </li>
+
</div>
−
<li> <a href="https://2014.igem.org/Team:Michigan"> 2014 Michigan</a></li>
+
</a>
−
<li> <a href="https://2014.igem.org/Team:ITESM-Guadalajara">2014 ITESM-Guadalajara </a></li>
+
</div>
−
<li> <a href="https://2014.igem.org/Team:SCU-China"> 2014 SCU-China </a></li>
+
</div>
−
</ul>
+
</div>
−
</div>
+
</div>
−
 
+
</div>
−
<div class="column half_size" >
+
<!-- End Section "Our Projects" example 5: Single Line Photos -->
−
<h5> Uploading pictures and files </h5>
+
−
<p> You can upload your pictures and files to the iGEM 2016 server. Remember to keep all your pictures and files within your team's namespace or at least include your team's name in the file name. <br />
+
−
When you upload, set the "Destination Filename" to <br><code>T--YourOfficialTeamName--NameOfFile.jpg</code>. (If you don't do this, someone else might upload a different file with the same "Destination Filename", and your file would be erased!)</p>
+
−
 
+
−
 
+
−
<div class="button_click"  onClick=" parent.location= 'https://2016.igem.org/Special:Upload '">
+
−
UPLOAD FILES
+
−
</div>
+
−
 
+
−
</div>
+
  
 +
<!-- Section "Team" example 1: Title & Full Image -->
 +
<div class="section section-team-1" id="team1">
 +
<div class="container">
 +
<div class="text-area">
 +
<div class="title">
 +
<h2>Meet the Team</h2>
 +
<div class="separator-container">
 +
<div class="separator line-separator">✻</div>
 +
</div>
 +
<p>insert text here about our team, image will go below like this one I stole :-)</p>
 +
</div>
 +
</div>
 +
</div>
 +
<div class="full-image gradient-image">
 +
<img alt="..." src="assets/img/team/team1.jpg">
 +
</div>
 +
</div>
 +
<!-- End Section "Team" example 1: Description & Full Image -->
 +
 +
<!-- BEGIN FOOTER-->
 +
<footer class="footer footer-big footer-color-black" data-color="black">
 +
<div class="container">
 +
<div class="row">
 +
<div class="col-md-2 col-sm-3">
 +
<div class="info animation-1 add-animation animate">
 +
<h5 class="title">Company</h5>
 +
<nav>
 +
<ul>
 +
<li>
 +
<a href="#" data-scroll="true" data-id="#overview">
 +
Top
 +
</a>
 +
</li>
 +
<li>
 +
<a href="#">
 +
something
 +
</a>
 +
</li>
 +
</ul>
 +
</nav>
 +
</div>
 +
</div>
 +
<div class="col-md-3 col-md-offset-1 col-sm-3">
 +
<div class="info animation-2 add-animation animate">
 +
<h5 class="title"> category</h5>
 +
<nav>
 +
<ul>
 +
<li>
 +
<a href="#">
 +
Contact Us
 +
</a>
 +
</li>
 +
</ul>
 +
</nav>
 +
</div>
 +
</div>
 +
<div class="col-md-3 col-sm-3">
 +
<div class="info animation-3 add-animation animate">
 +
<h5 class="title add-animation animate">Latest News</h5>
 +
<nav>
 +
<ul>
 +
<li>
 +
<a href="#">
 +
<i class="fa fa-twitter"></i> <b>Experiment</b>
 +
Curious what our project is about?  Check out this short video...
 +
<hr class="hr-small">
 +
</a>
 +
</li>
 +
<li>
 +
<a href="#">
 +
<i class="fa fa-twitter"></i>
 +
Looking to collaborate this year?  Sign up for our <b>pen pal</b> program...
 +
</a>
 +
</li>
 +
</ul>
 +
</nav>
 +
</div>
 +
</div>
 +
<div class="col-md-2 col-md-offset-1 col-sm-3">
 +
<div class="info animation-4 add-animation animate">
 +
<h5 class="title add-animation animate">Follow us on</h5>
 +
<nav>
 +
<ul>
 +
<li>
 +
<a href="#" class="btn btn-social btn-facebook btn-simple">
 +
<i class="fa fa-facebook-square"></i> Facebook
 +
</a>
 +
</li>
 +
<li>
 +
<a href="#" class="btn btn-social btn-twitter btn-simple">
 +
<i class="fa fa-twitter"></i> Twitter
 +
</a>
 +
</li>
 +
</ul>
 +
</nav>
 +
</div>
 +
</div>
 +
</div>
 +
<hr>
 +
<div class="copyright">
 +
2016 William and Mary iGEM
 +
</div>
 +
</div>
 +
</footer>
  
 +
       
 +
       
 +
        </div>
 +
       
 +
<!-- END OF WRAPPER DIV-->
  
 +
        <div class="body-layer"></div>
 +
    </body>
 +
   
 +
   
 +
   
 +
    <!--  core js files    -->
 +
    <script src="https://2016.igem.org/Team:William_and_Mary/jquery1-12?action=raw&amp;" type="text/javascript"></script>
 +
    <script src="https://2016.igem.org/Team:William_and_Mary/bootstrapjs?action=raw&amp;" type="text/javascript"></script>
 +
    <script type="text/javascript" src="https://2016.igem.org/Team:William_and_Mary/bootstrapswitch?action=raw&amp;"></script>
 +
    <script type="text/javascript" src="https://2016.igem.org/Team:William_and_Mary/jquerybxsliderjs?action=raw&amp;"></script>
  
 +
    <!--  file for adding vertical points where we activate the elements animation  -->
 +
    <script type="text/javascript" src="https://2016.igem.org/Team:William_and_Mary/waypoints?action=raw&amp;"></script>
  
 +
    <!--  js library for devices recognition -->
 +
    <script type="text/javascript" src="https://2016.igem.org/Team:William_and_Mary/modernizr?action=raw&amp;"></script>
  
 +
    <!--  script for google maps  -->
 +
    <!--script type="text/javascript" src="https://maps.googleapis.com/maps/api/js?sensor=false"></script-->
  
 +
    <!--  file where we handle all the script from the Rubik page  -->
 +
<script type="text/javascript" src="https://2016.igem.org/Team:William_and_Mary/rubikjs?action=raw&ctype=text/javascript"></script>
 +
   
 
</html>
 
</html>

Revision as of 01:24, 5 October 2016

William & Mary

...

Circuit Control

✻
creating a toolbox allowing for precision circuit control

Project "abstract" here

✻

What have we done this year, + pictures that can be scrolled through in the 'carousel' below.

Big Title & 4 Columns Icons

filler title

✻

I don't know what can go here, something cool I guess

section

text below that section

ugh

so much filler text wow

kvndkvkldsv

ipsum lorem dolor

:(

:-) :-) :-)

Example No.5

Projects section

✻

more project stuff yay

...
...
...
...

this is

a really cool website I think

Meet the Team

✻

insert text here about our team, image will go below like this one I stole :-)

...