Difference between revisions of "Team:Edinburgh OG/Collaborations"

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<p>As part of our collaboration, we characterized two biobricks from the Newcastle team (whom we met in person at the iGEM Scotland and Northern England meet-up). BBa_K1895000, also known as “Electrically induced promoter system v1” consists of the heat shock promoter BBa_J45504 driving expression of a two-gene operon made up of the rpoH Sigma-32 transcription factor and superfolded GFP. BBa_K1895001, also known as rpoH, is the wild-type RBS for the rpoH Sigma-32 transcription factor.</p>
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<p>Colonies were picked and grown overnight at 37 °C, 250 RPM in 50 mL conical tubes in 10 mL of LB medium containing 34 ug/mL chloramphenicol. Cell density was measured in a Jenway 7305 spectrophotometer and the obtained data was processed using Excel. Cells were then subcultured into opaque-walled 96 well plates and adjusted to OD600 0.05 in 290 µl of LB medium supplemented with relevant antibiotics.</p>
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<p>Plates were then placed in the Fluostar omega microplate reader from BMG labtech, and grown at 37 °C for 20 hours at 300 RPM. Aside from monitoring OD600, fluorescence was determined by measuring emission wavelengths using a fixed excitation filter (485nm) and a fixed emission filter (538nm) every 30 minutes. Six replicates were performed. The data is presented in relative fluorescence units. </p>
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<img src="https://static.igem.org/mediawiki/2016/9/9b/EdinburghOGgraphsnewcastle.png" width="100%">
  
  

Revision as of 23:28, 19 October 2016

As part of our collaboration, we characterized two biobricks from the Newcastle team (whom we met in person at the iGEM Scotland and Northern England meet-up). BBa_K1895000, also known as “Electrically induced promoter system v1” consists of the heat shock promoter BBa_J45504 driving expression of a two-gene operon made up of the rpoH Sigma-32 transcription factor and superfolded GFP. BBa_K1895001, also known as rpoH, is the wild-type RBS for the rpoH Sigma-32 transcription factor.

Colonies were picked and grown overnight at 37 °C, 250 RPM in 50 mL conical tubes in 10 mL of LB medium containing 34 ug/mL chloramphenicol. Cell density was measured in a Jenway 7305 spectrophotometer and the obtained data was processed using Excel. Cells were then subcultured into opaque-walled 96 well plates and adjusted to OD600 0.05 in 290 µl of LB medium supplemented with relevant antibiotics.

Plates were then placed in the Fluostar omega microplate reader from BMG labtech, and grown at 37 °C for 20 hours at 300 RPM. Aside from monitoring OD600, fluorescence was determined by measuring emission wavelengths using a fixed excitation filter (485nm) and a fixed emission filter (538nm) every 30 minutes. Six replicates were performed. The data is presented in relative fluorescence units.

Sharing and collaboration are core values of iGEM. We encourage you to reach out and work with other teams on difficult problems that you can more easily solve together.

Which other teams can we work with?

You can work with any other team in the competition, including software, hardware, high school and other tracks. You can also work with non-iGEM research groups, but they do not count towards the iGEM team collaboration silver medal criterion.

In order to meet the silver medal criteria on helping another team, you must complete this page and detail the nature of your collaboration with another iGEM team.

Here are some suggestions for projects you could work on with other teams:

  • Improve the function of another team's BioBrick Part or Device
  • Characterize another team's part
  • Debug a construct
  • Model or simulating another team's system
  • Test another team's software
  • Help build and test another team's hardware project
  • Mentor a high-school team