Difference between revisions of "Team:Alverno CA/InterLab"

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<head>
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    <link href=
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<title>Alverno iGEM 2016</title>
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    "https://static.igem.org/mediawiki/2016/thumb/5/58/T--Alverno_CA--Alverno_iGEM_2016_Logo.png/600px-T--Alverno_CA--Alverno_iGEM_2016_Logo.png"
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<link rel="icon" href="https://static.igem.org/mediawiki/2016/thumb/5/58/T--Alverno_CA--Alverno_iGEM_2016_Logo.png/600px-T--Alverno_CA--Alverno_iGEM_2016_Logo.png">
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    rel="icon"><br>
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</head>
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    <br>
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<body>
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<br>
 
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<br>
 
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<center><img src="https://static.igem.org/mediawiki/2016/thumb/5/58/T--Alverno_CA--Alverno_iGEM_2016_Logo.png/600px-T--Alverno_CA--Alverno_iGEM_2016_Logo.png" alt="Alverno iGEM Logo" style="width:300px;"></center>
 
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<br>
 
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<h1><center>Interlab Study</center></h1>
 
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<h2><center>Quantifying different sources of variation in gene expression using
 
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fluorescent transformed E. coli bacteria</center></h2>
 
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</body>
 
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        <div class="demo" id="container">
 
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<center>            <ul>
 
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              <br></br>
 
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                <li>
 
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  <img style="height:215px;width:215px;" src="https://static.igem.org/mediawiki/2016/6/6c/T--Alverno_CA--Interlab1.jpg" title="<b>Our team</b><br></br>asdf"/>
 
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  </li>
 
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  <li>
 
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  <img style="height:215px;width:215px;" src="https://static.igem.org/mediawiki/2016/9/9a/T--Alverno_CA--Interlab2.jpg" title="<b>Our team</b><br></br>asdf"/>
 
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  </li>
 
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  <li>
 
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  <img style="height:215px;width:215px;" src="https://static.igem.org/mediawiki/2016/2/25/T--Alverno_CA--Interlab3.jpg" title="<b>Our team</b><br></br>asdf"/>
 
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  </li>
 
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                <li>
 
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  <img style="height:215px;width:215px;" src="https://static.igem.org/mediawiki/2016/f/f5/T--Alverno_CA--Interlab4.jpg" title="<b>Our team</b><br></br>asdf"/>
 
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  </li>
 
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  <li>
 
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  <img style="height:215px;width:215px;" src="https://static.igem.org/mediawiki/2016/8/83/T--Alverno_CA--Interlab5.jpg" title="<b>Our team</b><br></br>asdf"/>
 
−
  </li>
 
−
  <li>
 
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  <img style="height:215px;width:215px;" src="https://static.igem.org/mediawiki/2016/e/e8/T--Alverno_CA--Interlab6.jpg" title="<b>Our team</b><br></br>asdf"/>
 
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  </li>
 
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                <li>
 
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  <img style="height:215px;width:215px;" src="https://static.igem.org/mediawiki/2016/8/83/T--Alverno_CA--Interlab7.jpg" title="<b>Our team</b><br></br>asdf"/>
 
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  </li>
 
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  <li>
 
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  <img style="height:215px;width:215px;" src="https://static.igem.org/mediawiki/2016/4/49/T--Alverno_CA--Interlab8.jpg" title="<b>Our team</b><br></br>asdf"/>
 
−
  </li>
 
−
  <li>
 
−
  <img style="height:215px;width:215px;" src="https://static.igem.org/mediawiki/2016/8/8c/T--Alverno_CA--Interlab9.jpg" title="<b>Our team</b><br></br>asdf"/>
 
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  </li>
 
  
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     </ul></center></div>
+
     <center>
 +
        <img alt="Alverno iGEM Logo" src=
 +
        "https://static.igem.org/mediawiki/2016/thumb/5/58/T--Alverno_CA--Alverno_iGEM_2016_Logo.png/600px-T--Alverno_CA--Alverno_iGEM_2016_Logo.png"
 +
        style="width:300px;">
 +
    </center>
 +
    <br>
  
  
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</div></div><!---->
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    <center>
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<br>
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        <h1>Interlab Study</h1>
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<br>
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    </center>
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<br>
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<br>
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<br>
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<br>
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<br>
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<br>
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<body>
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−
<p><h3>Summary:</h3> </p>
+
−
<p>As part of the 2016 iGEM Interlab Study, we tested 3 different fluorescent protein expression plasmids, J23101, J23106, and J23117 with positive and negative controls. We transformed the parts with iGEM's transformation protocol. Our bacteria were cultured on a LB agar plate and cultured in LB broth. To measure the differences in fluorescence expressed by different strength plasmids, we used a plate reader with an OD600 reference point and FITC standard curve.
+
  
−
</p>
 
  
−
<p><h3>Project Description:</h3></p>
+
    <center>
−
<p>The 2016 iGEM Interlab Study aims to compare results obtained by various teams in order to quantify the expression of 5 different constructs using fluorescence, which provides a useful insight into expression levels that can be monitored without disrupting cells. Each device used in the study is in the pSB1C3 plasmid backbone and are fluorescent protein expression plasmids of different strength promoters. The devices we tested were J23101, J23106, J23117 (Test Devices 1, 2, and 3). We used positive control I20270 and negative control R0040. J23101, with a strong promoter, showed the highest amount of fluorescence. J23117, with a weak promoter, showed the lowest amount of fluorescence, and J23106, with the medium strength promoter, showed fluorescence amounts between the other two. Our test devices were inserted into DH5alpha E. coli, which were transformed according to the iGEM transformation protocol. Our transformed cells were plated on LB plates with chloramphenicol and incubated overnight at 37° C. Two colonies were picked from each plate (with the exception of Test Device 3, with which there was only one) and were inoculated in 15mL test tubes. These devices were diluted, and then measured in a plate reader with an excitation wavelength of 35nm, according to iGEM’s measurement protocol.
+
        <h2>Quantifying different sources of variation in gene expression using
−
<p>
+
        fluorescent transformed E. coli bacteria</h2>
 +
    </center>
  
−
<p><h3>Protocol:</h3> </p>
 
−
<p><a href="https://static.igem.org/mediawiki/2016/c/c5/InterLab_iGEM2016_Plate_Reader_Protocol_Updated_July.pdf">Plate Reader Protocol</a></p>
 
−
<p><a href="https://static.igem.org/mediawiki/parts/6/67/IGEM_Registry_-_Transformation_Protocol.pdf">Transformation Protocol</a></p>
 
  
−
<p><h3>Results:</h3></p>
+
    <div class="demo" id="container">
−
<center><table class="image">
+
        <center>
−
<tr><td><img src="http://i.imgur.com/lWwA42t.png" alt="Placeholder Image" style="width:800px;"></td></tr>
+
            <ul>
−
<tr><td class="caption">FITC Fluorescence standard curve. Row A had pipetting errors and so is different from the other curves.</td></tr>
+
                <li style="list-style: none"><br>
 +
                <br>
 +
                </li>
  
−
<center><table class="image">
 
−
<tr><td><img src="http://i.imgur.com/FcVrzL0.png" alt="Placeholder Image" style="width:800px;"></td></tr>
 
−
<tr><td class="caption">Graph of Absorbance (600) over a 6 hour time period</td></tr>
 
−
</table></center>
 
−
<center><table class="image">
 
−
<tr><td><img src="http://i.imgur.com/eKgjQDe.png" alt="Placeholder Image" style="width:800px;"></td></tr>
 
−
<tr><td class="caption">Graph of Fluorescence in AU over a 6 hour time period</td></tr>
 
−
</table></center>
 
−
<center><table class="image">
 
−
<tr><td><img src="http://i.imgur.com/oyXnJRE.png" alt="Placeholder Image" style="width:800px;"></td></tr>
 
−
<tr><td class="caption">Graph of Fluorescence/Absorbance in AU over a 6 hour time period</td></tr>
 
−
</table></center>
 
  
 +
                <li><img src=
 +
                "https://static.igem.org/mediawiki/2016/6/6c/T--Alverno_CA--Interlab1.jpg"
 +
                style="height:215px;width:215px;" title=
 +
                "&lt;b&gt;Our team&lt;/b&gt;&lt;br&gt;&lt;/br&gt;asdf">
 +
                </li>
  
−
</body>
 
  
−
<script>$("#container").sliphover();
+
                <li><img src=
−
$(".sliphover-container").css('z-index','99');
+
                "https://static.igem.org/mediawiki/2016/9/9a/T--Alverno_CA--Interlab2.jpg"
−
$("#menuContainer").css('z-index','99');
+
                style="height:215px;width:215px;" title=
−
</script>
+
                "&lt;b&gt;Our team&lt;/b&gt;&lt;br&gt;&lt;/br&gt;asdf">
 +
                </li>
 +
 
 +
 
 +
                <li><img src=
 +
                "https://static.igem.org/mediawiki/2016/2/25/T--Alverno_CA--Interlab3.jpg"
 +
                style="height:215px;width:215px;" title=
 +
                "&lt;b&gt;Our team&lt;/b&gt;&lt;br&gt;&lt;/br&gt;asdf">
 +
                </li>
 +
 
 +
 
 +
                <li><img src=
 +
                "https://static.igem.org/mediawiki/2016/f/f5/T--Alverno_CA--Interlab4.jpg"
 +
                style="height:215px;width:215px;" title=
 +
                "&lt;b&gt;Our team&lt;/b&gt;&lt;br&gt;&lt;/br&gt;asdf">
 +
                </li>
 +
 
 +
 
 +
                <li><img src=
 +
                "https://static.igem.org/mediawiki/2016/8/83/T--Alverno_CA--Interlab5.jpg"
 +
                style="height:215px;width:215px;" title=
 +
                "&lt;b&gt;Our team&lt;/b&gt;&lt;br&gt;&lt;/br&gt;asdf">
 +
                </li>
 +
 
 +
 
 +
                <li><img src=
 +
                "https://static.igem.org/mediawiki/2016/e/e8/T--Alverno_CA--Interlab6.jpg"
 +
                style="height:215px;width:215px;" title=
 +
                "&lt;b&gt;Our team&lt;/b&gt;&lt;br&gt;&lt;/br&gt;asdf">
 +
                </li>
 +
 
 +
 
 +
                <li><img src=
 +
                "https://static.igem.org/mediawiki/2016/8/83/T--Alverno_CA--Interlab7.jpg"
 +
                style="height:215px;width:215px;" title=
 +
                "&lt;b&gt;Our team&lt;/b&gt;&lt;br&gt;&lt;/br&gt;asdf">
 +
                </li>
 +
 
 +
 
 +
                <li><img src=
 +
                "https://static.igem.org/mediawiki/2016/4/49/T--Alverno_CA--Interlab8.jpg"
 +
                style="height:215px;width:215px;" title=
 +
                "&lt;b&gt;Our team&lt;/b&gt;&lt;br&gt;&lt;/br&gt;asdf">
 +
                </li>
 +
 
 +
 
 +
                <li><img src=
 +
                "https://static.igem.org/mediawiki/2016/8/8c/T--Alverno_CA--Interlab9.jpg"
 +
                style="height:215px;width:215px;" title=
 +
                "&lt;b&gt;Our team&lt;/b&gt;&lt;br&gt;&lt;/br&gt;asdf">
 +
                </li>
 +
            </ul>
 +
        </center>
 +
    </div>
 +
    <!---->
 +
    <br>
 +
    <br>
 +
    <br>
 +
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 +
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 +
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 +
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 +
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 +
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 +
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 +
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 +
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 +
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 +
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 +
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 +
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 +
    <br>
 +
    <br>
 +
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 +
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 +
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 +
    <br>
 +
    <br>
 +
    <br>
 +
    <br>
 +
    <br>
 +
    <br>
 +
    <br>
 +
 
 +
 
 +
    <p>
 +
    </p>
 +
 
 +
 
 +
    <h3>Summary:</h3>
 +
    <p></p>
 +
 
 +
    <p>As part of the 2016 iGEM Interlab Study, we tested 3 different
 +
    fluorescent protein expression plasmids, J23101, J23106, and J23117 with
 +
    positive and negative controls. We transformed the parts with iGEM's
 +
    transformation protocol. Our bacteria were cultured on a LB agar plate and
 +
    cultured in LB broth. To measure the differences in fluorescence expressed
 +
    by different strength plasmids, we used a plate reader with an OD600
 +
    reference point and FITC standard curve.</p>
 +
 
 +
 
 +
    <p>
 +
    </p>
 +
 
 +
 
 +
    <h3>Project Description:</h3>
 +
    <p></p>
 +
 
 +
    <p>The 2016 iGEM Interlab Study aims to compare results obtained by various
 +
    teams in order to quantify the expression of 5 different constructs using
 +
    fluorescence, which provides a useful insight into expression levels that
 +
    can be monitored without disrupting cells. Each device used in the study is
 +
    in the pSB1C3 plasmid backbone and are fluorescent protein expression
 +
    plasmids of different strength promoters. The devices we tested were
 +
    J23101, J23106, J23117 (Test Devices 1, 2, and 3). We used positive control
 +
    I20270 and negative control R0040. J23101, with a strong promoter, showed
 +
    the highest amount of fluorescence. J23117, with a weak promoter, showed
 +
    the lowest amount of fluorescence, and J23106, with the medium strength
 +
    promoter, showed fluorescence amounts between the other two. Our test
 +
    devices were inserted into DH5alpha E. coli, which were transformed
 +
    according to the iGEM transformation protocol. Our transformed cells were
 +
    plated on LB plates with chloramphenicol and incubated overnight at 37° C.
 +
    Two colonies were picked from each plate (with the exception of Test Device
 +
    3, with which there was only one) and were inoculated in 15mL test tubes.
 +
    These devices were diluted, and then measured in a plate reader with an
 +
    excitation wavelength of 35nm, according to iGEM’s measurement
 +
    protocol.</p>
 +
 
 +
 
 +
    <p>
 +
    </p>
 +
 
 +
 
 +
    <p>
 +
    </p>
 +
 
 +
 
 +
    <h3>Protocol:</h3>
 +
    <p></p>
 +
 
 +
    <p><a href=
 +
    "https://static.igem.org/mediawiki/2016/c/c5/InterLab_iGEM2016_Plate_Reader_Protocol_Updated_July.pdf">
 +
    Plate Reader Protocol</a>
 +
    </p>
 +
 
 +
 
 +
    <p><a href=
 +
    "https://static.igem.org/mediawiki/parts/6/67/IGEM_Registry_-_Transformation_Protocol.pdf">
 +
    Transformation Protocol</a>
 +
    </p>
 +
 
 +
 
 +
    <p>
 +
    </p>
 +
 
 +
 
 +
    <h3>Results:</h3>
 +
    <p></p>
 +
 
 +
    <center>
 +
        <center>
 +
            <table class="image">
 +
                <tr>
 +
                    <td><img alt="Placeholder Image" src=
 +
                    "http://i.imgur.com/FcVrzL0.png" style="width:800px;">
 +
                    </td>
 +
                </tr>
 +
 
 +
 
 +
                <tr>
 +
                    <td class="caption">Graph of Absorbance (600) over a 6 hour
 +
                    time period</td>
 +
                </tr>
 +
            </table>
 +
        </center>
 +
 
 +
 
 +
        <center>
 +
            <table class="image">
 +
                <tr>
 +
                    <td><img alt="Placeholder Image" src=
 +
                    "http://i.imgur.com/eKgjQDe.png" style="width:800px;">
 +
                    </td>
 +
                </tr>
 +
 
 +
 
 +
                <tr>
 +
                    <td class="caption">Graph of Fluorescence in AU over a 6
 +
                    hour time period</td>
 +
                </tr>
 +
            </table>
 +
        </center>
 +
 
 +
 
 +
        <center>
 +
            <table class="image">
 +
                <tr>
 +
                    <td><img alt="Placeholder Image" src=
 +
                    "http://i.imgur.com/oyXnJRE.png" style="width:800px;">
 +
                    </td>
 +
                </tr>
 +
 
 +
 
 +
                <tr>
 +
                    <td class="caption">Graph of Fluorescence/Absorbance in AU
 +
                    over a 6 hour time period</td>
 +
                </tr>
 +
            </table>
 +
        </center>
 +
 
 +
 
 +
        <table class="image">
 +
            <tr>
 +
                <td><img alt="Placeholder Image" src=
 +
                "http://i.imgur.com/lWwA42t.png" style="width:800px;">
 +
                </td>
 +
            </tr>
 +
 
 +
 
 +
            <tr>
 +
                <td class="caption">FITC Fluorescence standard curve. Row A had
 +
                pipetting errors and so is different from the other
 +
                curves.</td>
 +
            </tr>
 +
        </table>
 +
        <script>
 +
        $("#container").sliphover();
 +
        $(".sliphover-container").css('z-index','99');
 +
        $("#menuContainer").css('z-index','99');
 +
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Revision as of 18:10, 17 October 2016

<!DOCTYPE html> Alverno iGEM 2016 {{Alverno_CA}}

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Interlab Study

Quantifying different sources of variation in gene expression using fluorescent transformed E. coli bacteria































Summary:

As part of the 2016 iGEM Interlab Study, we tested 3 different fluorescent protein expression plasmids, J23101, J23106, and J23117 with positive and negative controls. We transformed the parts with iGEM's transformation protocol. Our bacteria were cultured on a LB agar plate and cultured in LB broth. To measure the differences in fluorescence expressed by different strength plasmids, we used a plate reader with an OD600 reference point and FITC standard curve.

Project Description:

The 2016 iGEM Interlab Study aims to compare results obtained by various teams in order to quantify the expression of 5 different constructs using fluorescence, which provides a useful insight into expression levels that can be monitored without disrupting cells. Each device used in the study is in the pSB1C3 plasmid backbone and are fluorescent protein expression plasmids of different strength promoters. The devices we tested were J23101, J23106, J23117 (Test Devices 1, 2, and 3). We used positive control I20270 and negative control R0040. J23101, with a strong promoter, showed the highest amount of fluorescence. J23117, with a weak promoter, showed the lowest amount of fluorescence, and J23106, with the medium strength promoter, showed fluorescence amounts between the other two. Our test devices were inserted into DH5alpha E. coli, which were transformed according to the iGEM transformation protocol. Our transformed cells were plated on LB plates with chloramphenicol and incubated overnight at 37° C. Two colonies were picked from each plate (with the exception of Test Device 3, with which there was only one) and were inoculated in 15mL test tubes. These devices were diluted, and then measured in a plate reader with an excitation wavelength of 35nm, according to iGEM’s measurement protocol.

Protocol:

Plate Reader Protocol

Transformation Protocol

Results:

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Graph of Absorbance (600) over a 6 hour time period
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Graph of Fluorescence in AU over a 6 hour time period
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Graph of Fluorescence/Absorbance in AU over a 6 hour time period
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FITC Fluorescence standard curve. Row A had pipetting errors and so is different from the other curves.