Difference between revisions of "Team:ASIJ Tokyo/Results"
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The goal of our project was to construct a biobrick capable of plastic degradation. We created three biobrick constructs. Each of these constructs contained PETase, ChloroR, osmY, and an Andersen Promoter. The principal difference between three these constructs was the strength of the Andersen promoter incorporated in the construct. Depending on their predicted ability to promote the secretion of the enzyme PETase by the <i>E. coli</i> bacterium, these Andersen promoters were labelled as weak, moderately-strong, or strong. | The goal of our project was to construct a biobrick capable of plastic degradation. We created three biobrick constructs. Each of these constructs contained PETase, ChloroR, osmY, and an Andersen Promoter. The principal difference between three these constructs was the strength of the Andersen promoter incorporated in the construct. Depending on their predicted ability to promote the secretion of the enzyme PETase by the <i>E. coli</i> bacterium, these Andersen promoters were labelled as weak, moderately-strong, or strong. | ||
Revision as of 01:31, 18 October 2016
Results
Overview
The goal of our project was to construct a biobrick capable of plastic degradation. We created three biobrick constructs. Each of these constructs contained PETase, ChloroR, osmY, and an Andersen Promoter. The principal difference between three these constructs was the strength of the Andersen promoter incorporated in the construct. Depending on their predicted ability to promote the secretion of the enzyme PETase by the E. coli bacterium, these Andersen promoters were labelled as weak, moderately-strong, or strong.
Our experiment was ineffectual in demonstrating a substantial degradation of PET plastic. The differences in mass measurements of PET after allowing the E. coli bacterium to secrete PETase into the system were insignificant. We believe human errors, such as our failure to feed the E. colicells at appropriate intervals, were a main cause of experimental inaccuracies. In addition, time constraints prevented further data collection.
We are unsure regarding whether our PETase construct was successfully secreted into the system. One way we could test this would be to tag PETase with c-myc, and perform a Western Blot test.
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Analysis/Conclusion and Future Works
Analysis/Conclusion
After analyzing our data, we have concluded that our experiment was ineffectual in demonstrating a substantial degradation of PET plastic with the Andersen promoters we chose. However, because we tested the strength of our promoters prior to the degradation phase of our experiment, we have concluded that our promoters were not the cause of the lack in measurable PET plastic degradation.
We believe that our lack of conclusive data stems from several human errors. During our experiment, we failed to provide the e. Coli cells with sufficient nutrition at the appropriate times. Moreover, due to time constraints, we did not assay for a secreted PETase in the growth medium. Therefore, we are not sure if our PETase construct was successfully secreted. We would have assayed this by using a c-Myc tag on our PETase construct and by performing a Western Blot. Finally, the large differences in PET film mass for our control group suggest two possible errors: either that our PET film was inexplicably polymerized in one of the groups and degraded in the other, or that there was an error in measurement.
Overall, our data gives us little meaningful information about PET degradation by our constructs due to a lack of significant change and lots of haphazard experimental practice. If our team had more time to complete our experiment, we would consider our previous errors more carefully. In particular, we would establish set time periods during which we need to change the growth media—LB broth, in our case—for each e.Coli colony. We would also make sure to replenish the nutrient stock of the e.Coli within a three day time period, rather than our previous five to six day period. Finally, we would allow the PET plastic degradation phase to run for longer than 13 days (our current established time allotted for degradation) in order to produce more accurate results.
Future Works
If the team was to carry out this experiment again, perhaps we would gain more significant evidence than we did. We would check for successful expression of our PETase construct, better tend our E. coli, and gather more data over a longer period of time. This data would then help us decide which promoter is best used to optimize the degradation of PET plastic and know that a PETase construct successfully being secreted by the bacteria. Such a conclusion and results could help us determine the next few steps to take in helping our Earth. Of course, we would still have to determine the implications and consequences of using our bioengineered e. Coli and PETase (such as whether or not there would be any acidic waste products, etc.), but knowing which promoter to use to degrade PET plastic more efficiently would be the first step towards applying our lab to the real world.
