Difference between revisions of "Team:Hong Kong UCCKE/Parts"

Line 1: Line 1:
{{Hong_Kong_UCCKE}}
+
{{Hong_Kong_UCCKE/CSS/reset.css}} {{Hong_Kong_UCCKE/CSS/bootstrap.css}} {{Hong_Kong_UCCKE/CSS/style.css}} {{Hong_Kong_UCCKE/CSS/latofonts.css}} {{Hong_Kong_UCCKE/CSS/font-awesome.css}} {{Hong_Kong_UCCKE/CSS/jcarousel.responsive.css}} {{Hong_Kong_UCCKE/CSS/bootstrap.toc.css}}
 
<html>
 
<html>
  
 +
<link rel="stylesheet" href="https://2016.igem.org/Team:Leiden/libraries/font-awesome-4-6-3/css/font-awesome-min?action=raw&amp;ctype=text/css" type="text/css" />
 +
<meta name="viewport" content="width=device-width, initial-scale=1">
 +
<div class="wholehead">
  
 +
</html>
 +
{{Hong_Kong_UCCKE/crazyheader}}
 +
<html>
 +
<div class="header" id="header">
 +
    <div class="container">
  
 +
        <div class="row">
 +
            <div class="col-sm-12 page_header-text">
 +
                <div>
 +
                    <h1 data-toc-skip>UCCKE / Safety</h1>
 +
                    <p>offendit malis arbitror appellat o arbitror nisi nam quamquam illustriora do se appellat praetermissum.</p>
 +
                </div>
 +
            </div>
 +
            <div class="col-sm-12" style="text-align:center;">
 +
                <a href="#normalsec" class="no-text-dec">
 +
                    <i class="fa fa-angle-down header-down" aria-hidden="true" style="font-size:40px; margin-bottom:10px;"></i>
 +
                </a>
 +
            </div>
 +
        </div>
  
 +
    </div>
 +
</div>
 +
</div>
 +
<style>
 +
.normalsec h2 {
 +
padding-top:0;
 +
}
 +
</style>
 +
<div class="normalsec" id="normalsec" style="text-align:left !important;">
 +
    <div class="container">
 +
        <div class="row">
 +
            <div class="col-sm-9 col-xs-12">
  
 +
                <h2 style="margin-top:0; padding-top:0;">Safety Checklist</h2>
 +
                <p style="text-align:left !important; font-size: 15px !important;">
 +
                    <ul style="list-style-position: outside; list-style-image: url('https://static.igem.org/mediawiki/2016/5/57/T--Hong_Kong_UCCKE--bullet-image.png'); font-size: 15px !important;">
 +
                        <li>Read about Safe Project Design, Safe Lab Work, and Safe Shipment</li>
 +
                        <li>Notice the few hard-and-fast rules we have: don't use organisms from Risk Group 3 or 4, and don't release our project into the wild</li>
 +
                        <li>Know our local guidelines: talk to our team instructors and our institution's biosafety officers</li>
 +
                        <li>Ask for help: email safety (at) igem (dot) org, or join the iGEM team for Virtual Open Office Hours</li>
 +
                    </ul>
 +
                </p>
 +
            </div>
 +
            <div class="col-sm-4 col-xs-12">
 +
                <script src="https://2016.igem.org/Template:Hong_Kong_UCCKE/JS/bootstraptoc?action=raw&ctype=text/javascript" type="text/javascript"></script>
 +
            </div>
  
<div class="column full_size">
+
            <div class="col-sm-9 col-xs-12">
  
 +
                <h2>Safe Organisms</h2>
  
<p>Each team will make new parts during iGEM and will submit them to the Registry of Standard Biological Parts. The iGEM software provides an easy way to present the parts your team has created. The <code>&lt;groupparts&gt;</code> tag (see below) will generate a table with all of the parts that your team adds to your team sandbox.</p>
+
                <p style="text-align:left !important;">We use two kinds of organisms, Escherichia coli and Caenorhabditis elegans in our experiments. E.coli is categorized as a Risk Group 1 organism <sup><a href="#ref1b" id="ref1a">[1]</a></sup> while C.elegans is on the whitelist <sup><a href="#ref2b" id="ref2a">[2]</a></sup>. According to the official iGEM description, “Risk Group 1 organisms do not cause disease in healthy adult humans.” and organisms on the whitelist “do not cause any threat to the environment”. To make sure that everything is safe enough to use, we have always been talking to our lab technician, Mr. Ho xx, about the proper usage, storage and disposal methods.</p>
<p>Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without needing to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.</p>
+
            </div>
 +
            <div class="col-sm-4 col-xs-12"></div>
  
 +
            <div class="col-sm-9 col-xs-12">
  
</div>
+
                <h2>Safe Project Design</h2>
  
 +
                <p style="text-align:left !important;">Safety is always our first priority when carrying out the program. Although the only species we use is E.coli and C.elegans, which are only organisms which do not cause harm to human when used properly, we believe that there is still a danger when our bacteria is released into the public environment, especially to children and elderlies. For example, it may cause bacteria to develop antibiotics resistance and make more diseases incurable <sup><a href="#ref3b" id="ref3a">[3]</a></sup>. Therefore, we make sure that no bacteria or organism carrying our modified genes will be released out of the laboratory. To achieve this, the bacteria will always remain inside the laboratory; we always bring worms into the laboratory but not our bacteria outside the laboratory into the public environment. While doing any experiment with e.coli, we ensure the bacteria do not expose to the environment by setting up a sterile space using a Bunsen burner and working in the heated area. Also to keep the bacteria away from the open environment, we seal every used petri dishes with parafilm before long term storage.</p>
 +
            </div>
 +
            <div class="col-sm-4 col-xs-12"></div>
  
 +
            <div class="col-sm-9 col-xs-12">
  
 +
                <h2>Safe Lab Work</h2>
  
 +
                <p style="text-align:left !important;">Besides of ensuring a safe project design, we are solicitous about our biosafety and general safety in our lab work. All secondary schools use biology laboratories with biosafety level 1 <sup><a href="#ref4b" id="ref4a">[4]</a></sup>. We also believe that safe lab practices are important, so we emphasize safety through maintaining a high level of personal hygiene and apply good microbiology techniques <sup><a href="#ref5b" id="ref5a">[5]</a></sup>. We wear lab coats and gloves while doing any experiment and wash our hands with soap before leaving the laboratory. To prevent any bacteria being left on the bench after experiments, we always use alcohol to wipe the bench thoroughly before we leave. (While doing any experiment with e.coli, we ensure the bacteria do not expose to the environment by setting up a sterile space using a Bunsen burner and working in the heated area. Also to keep the bacteria away from the open environment, we seal every used petri dishes with parafilm before long term storage.) We received safety training when joining the team, topics include risk assessment, general precautions, fire precautions, handling chemical spills, disposal of chemical wastes and experiments on biotechnology. Details of the training can be found in <a href="http://cd1.edb.hkedcity.net/cd/science/laboratory/safety/SafetyHandbook2013_English.pdf">here</a>. which we follow to the letter.</p>
 +
            </div>
 +
            <div class="col-sm-4 col-xs-12"></div>
  
<div class="column half_size">
+
            <div class="col-sm-9 col-xs-12">
<div class="highlight">
+
<h5>Note</h5>
+
<p>Note that parts must be documented on the <a href="http://parts.igem.org/Main_Page"> Registry</a>. This page serves to <i>showcase</i> the parts you have made. Future teams and other users and are much more likely to find parts by looking in the Registry than by looking at your team wiki.</p>
+
</div>
+
</div>
+
  
 +
                <h2>Safe Shipment</h2>
  
 +
                <p style="text-align:left !important;">123</p>
 +
            </div>
 +
            <div class="col-sm-4 col-xs-12"></div>
  
 +
            <div class="col-sm-9 col-xs-12" style="text-align:left !important;">
  
<div class="column half_size">
+
                <h2>Other Safety Concerns</h2>
  
<h5>Adding parts to the registry</h5>
+
                <p style="text-align:left !important;">Some steps of our experiments require the use of UV light, whereupon exposure to UV radiation may result in sunburn, pigmentation of skin and slight discomfort <sup><a href="#ref7b" id="ref7a">[7]</a></sup>. To ensure our safety, we make sure that any parts of our body won’t be directly exposed to UV radiation; we will place a UV filter board <sup><a href="#ref8b" id="ref8a">[8]</a></sup> between us and the source of UV radiation so that it will be blocked from us.</p>
<p>You can add parts to the Registry at our <a href="http://parts.igem.org/Add_a_Part_to_the_Registry">Add a Part to the Registry</a> link.</p>
+
<p>We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better you will remember all the details about your parts. Remember, you don't need to send us the DNA sample before you create an entry for a part on the Registry. (However, you <b>do</b> need to send us the DNA sample before the Jamboree. If you don't send us a DNA sample of a part, that part will not be eligible for awards and medal criteria.)</p>
+
</div>
+
  
 +
<style>
 +
.ref-text-left {
 +
text-align:left !important;
 +
}
 +
</style>
 +
<p style="margin-top:20px;"><span class="label label-primary" style="font-size:20px;">Reference</span></p>
 +
                <p id="ref1b" class="ref-text-left">
 +
<a href="#ref1a">[1]</a>: iGEM. (2016). Safety/Risk Groups. Available: https://2016.igem.org/Safety/Risk_Groups. Last accessed 26th Aug 2016.</p>
 +
<p id="ref2b" class="ref-text-left"><a href="#ref2a">[2]</a>: iGEM. (2016). Safety/White List. Available: https://2016.igem.org/Safety/White_List. Last accessed 26th Aug 2016.</p>
 +
<p id="ref3b" class="ref-text-left"><a href="#ref3a">[3]</a>: University of Minnesota. (2003). Genetically Modified Organisms (GMO). Available: http://enhs.umn.edu/current/5103/gm/harmful.html. Last accessed 26th Aug 2016.</p>
 +
<p id="ref4b" class="ref-text-left"><a href="#ref4a">[4]</a>: World Health Organisation (2004). Laboratory Biosafety Manual. 3rd ed. Geneva: World Health Organisation. p2-3,9-19.</p>
 +
<p id="ref5b" class="ref-text-left"><a href="#ref5a">[5]</a>: World Health Organisation (2004). Laboratory Biosafety Manual. 3rd ed. Geneva: World Health Organisation. P69-93.</p>
 +
<p id="ref6b" class="ref-text-left"><a href="#ref6a">[6]</a>: World Health Organisation (2004). Laboratory Biosafety Manual. 3rd ed. Geneva: World Health Organisation. P94-95.</p>
 +
<p id="ref7b" class="ref-text-left"><a href="#ref7a">[7]</a>: Paolo Vecchia, Maila Hietanen, Bruce E. Stuck Emilie van Deventer, Shengli Niu (2007). Protecting Workers from Ultraviolet Radiation. Germany: International Commission on Non-Ionizing Radiation Protection. P17-28.</p>
 +
<p id="ref8b" class="ref-text-left"><a href="#ref8a">[8]</a>: Paolo Vecchia, Maila Hietanen, Bruce E. Stuck Emilie van Deventer, Shengli Niu (2007). Protecting Workers from Ultraviolet Radiation. Germany: International Commission on Non-Ionizing Radiation Protection. p65.</p>
  
  
  
  
<div class="column half_size">
+
                <!--
  
<h5>What information do I need to start putting my parts on the Registry?</h5>
 
<p>The information needed to initially create a part on the Registry is:</p>
 
<ul>
 
<li>Part Name</li>
 
<li>Part type</li>
 
<li>Creator</li>
 
<li>Sequence</li>
 
<li>Short Description (60 characters on what the DNA does)</li>
 
<li>Long Description (Longer description of what the DNA does)</li>
 
<li>Design considerations</li>
 
</ul>
 
  
<p>
+
 
We encourage you to put up <em>much more</em> information as you gather it over the summer. If you have images, plots, characterization data and other information, please also put it up on the part page. </p>
+
 
 +
<br><br><br><br><br><br><br><br><br>
 +
 
 +
 
 +
 
 +
 
 +
<div class="column full_size">
 +
 
 +
 
 +
<p>Please visit <a href="https://2016.igem.org/Safety">the main Safety page</a> to find this year's safety requirements & deadlines, and to learn about safe & responsible research in iGEM.</p>
 +
 
 +
<p>On this page of your wiki, you should write about how you are addressing any safety issues in your project. The wiki is a place where you can <strong>go beyond the questions on the safety forms</strong>, and write about whatever safety topics are most interesting in your project. (You do not need to copy your safety forms onto this wiki page.)</p>
  
 
</div>
 
</div>
  
  
<div class="column half_size">
+
<div class="column full_size">
 +
<h5>Safe Project Design</h5>
  
<h5>Inspiration</h5>
+
<p>Does your project include any safety features? Have you made certain decisions about the design to reduce risks? Write about them here! For example:</p>
<p>We have a created  a <a href="http://parts.igem.org/Well_Documented_Parts">collection of well documented parts</a> that can help you get started.</p>
+
  
<p> You can also take a look at how other teams have documented their parts in their wiki:</p>
 
 
<ul>
 
<ul>
<li><a href="https://2014.igem.org/Team:MIT/Parts"> 2014 MIT </a></li>
+
<li>Choosing a non-pathogenic chassis</li>
<li><a href="https://2014.igem.org/Team:Heidelberg/Parts"> 2014 Heidelberg</a></li>
+
<li>Choosing parts that will not harm humans / animals / plants</li>
<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Parts">2014 Tokyo Tech</a></li>
+
<li>Substituting safer materials for dangerous materials in a proof-of-concept experiment</li>
 +
<li>Including an "induced lethality" or "kill-switch" device</li>
 
</ul>
 
</ul>
 +
 
</div>
 
</div>
  
<div class="column full_size">
+
<div class="column half_size">
<h5>Part Table </h5>
+
<h5>Safe Lab Work</h5>
<div class="highlight">
+
  
 +
<p>What safety procedures do you use every day in the lab? Did you perform any unusual experiments, or face any unusual safety issues? Write about them here!</p>
  
</html>
 
<groupparts>iGEM2016 Hong_Kong_UCCKE</groupparts>
 
<html>
 
</div>
 
 
</div>
 
</div>
  
 +
<div class="column half_size">
 +
<h5>Safe Shipment</h5>
  
 +
<p>Did you face any safety problems in sending your DNA parts to the Registry? How did you solve those problems?</p>
 +
</div>
 +
-->
 +
            </div>
 +
            <div class="col-sm-4 col-xs-12"></div>
  
 +
 +
            <style>
 +
                nav[data-toggle='toc'] .nav .active .nav {
 +
                    display: none;
 +
                }
 +
               
 +
                #toc {
 +
                    background-color: initial;
 +
                    border: none;
 +
                }
 +
            </style>
 +
            <nav id="toc"></nav>
 +
            <script>
 +
                $(function () {
 +
                    var navSelector = '#toc';
 +
                    var $myNav = $(navSelector);
 +
                    Toc.init($myNav);
 +
                    $('body').scrollspy({
 +
                        target: navSelector
 +
                    });
 +
                });
 +
            </script>
 +
            <script>
 +
                var fixmeTop = $('.normalsec').offset().top;
 +
                $(window).scroll(function () {
 +
                    if (window.innerWidth < 768) {
 +
                        $('#toc').css({
 +
                            position: 'relative'
 +
                            , display: 'none'
 +
                        });
 +
                    } else {
 +
                        var scrollTop = $(".normalsec").offset().top - $(window).scrollTop();
 +
                        var currentScroll = $(window).scrollTop();
 +
                        if (currentScroll >= fixmeTop) {
 +
                            $('#toc').css({
 +
                                position: 'relative'
 +
                                , top: scrollTop * -1
 +
                            });
 +
                        } else {
 +
                            $('#toc').css({
 +
                                position: 'static'
 +
                            });
 +
                        }
 +
                    }
 +
                });
 +
            </script>
 +
        </div>
 +
    </div>
 +
</div>
  
 
</html>
 
</html>
 +
{{Hong_Kong_UCCKE/heyfooter}}
 +
{{Hong_Kong_UCCKE/illbeback}}

Revision as of 12:48, 26 September 2016

Safety Checklist

  • Read about Safe Project Design, Safe Lab Work, and Safe Shipment
  • Notice the few hard-and-fast rules we have: don't use organisms from Risk Group 3 or 4, and don't release our project into the wild
  • Know our local guidelines: talk to our team instructors and our institution's biosafety officers
  • Ask for help: email safety (at) igem (dot) org, or join the iGEM team for Virtual Open Office Hours

Safe Organisms

We use two kinds of organisms, Escherichia coli and Caenorhabditis elegans in our experiments. E.coli is categorized as a Risk Group 1 organism [1] while C.elegans is on the whitelist [2]. According to the official iGEM description, “Risk Group 1 organisms do not cause disease in healthy adult humans.” and organisms on the whitelist “do not cause any threat to the environment”. To make sure that everything is safe enough to use, we have always been talking to our lab technician, Mr. Ho xx, about the proper usage, storage and disposal methods.

Safe Project Design

Safety is always our first priority when carrying out the program. Although the only species we use is E.coli and C.elegans, which are only organisms which do not cause harm to human when used properly, we believe that there is still a danger when our bacteria is released into the public environment, especially to children and elderlies. For example, it may cause bacteria to develop antibiotics resistance and make more diseases incurable [3]. Therefore, we make sure that no bacteria or organism carrying our modified genes will be released out of the laboratory. To achieve this, the bacteria will always remain inside the laboratory; we always bring worms into the laboratory but not our bacteria outside the laboratory into the public environment. While doing any experiment with e.coli, we ensure the bacteria do not expose to the environment by setting up a sterile space using a Bunsen burner and working in the heated area. Also to keep the bacteria away from the open environment, we seal every used petri dishes with parafilm before long term storage.

Safe Lab Work

Besides of ensuring a safe project design, we are solicitous about our biosafety and general safety in our lab work. All secondary schools use biology laboratories with biosafety level 1 [4]. We also believe that safe lab practices are important, so we emphasize safety through maintaining a high level of personal hygiene and apply good microbiology techniques [5]. We wear lab coats and gloves while doing any experiment and wash our hands with soap before leaving the laboratory. To prevent any bacteria being left on the bench after experiments, we always use alcohol to wipe the bench thoroughly before we leave. (While doing any experiment with e.coli, we ensure the bacteria do not expose to the environment by setting up a sterile space using a Bunsen burner and working in the heated area. Also to keep the bacteria away from the open environment, we seal every used petri dishes with parafilm before long term storage.) We received safety training when joining the team, topics include risk assessment, general precautions, fire precautions, handling chemical spills, disposal of chemical wastes and experiments on biotechnology. Details of the training can be found in here. which we follow to the letter.

Safe Shipment

123

Other Safety Concerns

Some steps of our experiments require the use of UV light, whereupon exposure to UV radiation may result in sunburn, pigmentation of skin and slight discomfort [7]. To ensure our safety, we make sure that any parts of our body won’t be directly exposed to UV radiation; we will place a UV filter board [8] between us and the source of UV radiation so that it will be blocked from us.

Reference

[1]: iGEM. (2016). Safety/Risk Groups. Available: https://2016.igem.org/Safety/Risk_Groups. Last accessed 26th Aug 2016.

[2]: iGEM. (2016). Safety/White List. Available: https://2016.igem.org/Safety/White_List. Last accessed 26th Aug 2016.

[3]: University of Minnesota. (2003). Genetically Modified Organisms (GMO). Available: http://enhs.umn.edu/current/5103/gm/harmful.html. Last accessed 26th Aug 2016.

[4]: World Health Organisation (2004). Laboratory Biosafety Manual. 3rd ed. Geneva: World Health Organisation. p2-3,9-19.

[5]: World Health Organisation (2004). Laboratory Biosafety Manual. 3rd ed. Geneva: World Health Organisation. P69-93.

[6]: World Health Organisation (2004). Laboratory Biosafety Manual. 3rd ed. Geneva: World Health Organisation. P94-95.

[7]: Paolo Vecchia, Maila Hietanen, Bruce E. Stuck Emilie van Deventer, Shengli Niu (2007). Protecting Workers from Ultraviolet Radiation. Germany: International Commission on Non-Ionizing Radiation Protection. P17-28.

[8]: Paolo Vecchia, Maila Hietanen, Bruce E. Stuck Emilie van Deventer, Shengli Niu (2007). Protecting Workers from Ultraviolet Radiation. Germany: International Commission on Non-Ionizing Radiation Protection. p65.