Difference between revisions of "Team:Northwestern/08 17"

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   <article>
 
   <article>
 
     <h1>Wednesday, August 17<sup>th</sup></h3>
 
     <h1>Wednesday, August 17<sup>th</sup></h3>
 
+
  <h2>Results:</h2>
 +
    <h3>Sequencing:</h3>
 +
    <p>saCas9 Gibson Assembly was correctly assembled.</p>
 +
    <div class="row">
 +
      <div class="col-sm-8"><img src="https://static.igem.org/mediawiki/2016/9/98/T--Northwestern--08_17_1.png" width="1921" height="1877" alt=""></div>
 +
    </div>
 +
    <h3>Transformation:</h3>
 +
    <p>The Gibson assemblies of signal sequences into Cas9 were unsuccessful.</p>
 +
    <div class="row">
 +
      <div class="col-sm-6"><img src="https://static.igem.org/mediawiki/2016/b/b5/T--Northwestern--08_17_2.png" width="2447" height="2553" alt=""/>
 +
        <p><strong>Figure 1:</strong> Transformation positive control</p>
 +
      </div>
 +
      <div class="col-sm-6"><img src="https://static.igem.org/mediawiki/2016/7/72/T--Northwestern--08_17_3.png" width="2443" height="2685" alt=""/>
 +
        <p><strong>Figure 2:</strong> Transformation negative control</p>
 +
      </div>
 +
    </div>
 +
    <div class="row">
 +
      <div class="col-sm-6"><img src="https://static.igem.org/mediawiki/2016/2/26/T--Northwestern--08_17_4.png" width="2447" height="2553" alt=""/>
 +
        <p><strong>Figure 3:</strong> Gibson assembly positive control</p>
 +
      </div>
 +
      <div class="col-sm-6"><img src="https://static.igem.org/mediawiki/2016/3/3d/T--Northwestern--08_17_5.png" width="2365" height="2409" alt=""/>
 +
        <p><strong>Figure 4:</strong> No enzyme negative control</p>
 +
      </div>
 +
    </div>
 +
    <div class="row">
 +
      <div class="col-sm-6"><img src="https://static.igem.org/mediawiki/2016/e/e2/T--Northwestern--08_17_6.png" width="2447" height="2553" alt=""/>
 +
        <p><strong>Figure 5:</strong> gRNA + mRFP Gibson</p>
 +
      </div>
 +
      <div class="col-sm-6"><img src="https://static.igem.org/mediawiki/2016/c/cf/T--Northwestern--08_17_7.png" width="2443" height="2685" alt=""/>
 +
        <p><strong>Figure 6:</strong> INP + Cas9 Gibson</p>
 +
      </div>
 +
    </div>
 +
    <div class="row">
 +
      <div class="col-sm-6"><img src="https://static.igem.org/mediawiki/2016/a/ac/T--Northwestern--08_17_8.png" width="2447" height="2553" alt=""/>
 +
        <p><strong>Figure 7:</strong> TorA + Cas9 Gibson</p>
 +
      </div>
 +
</div>
 +
    <h2>Tasks:</h2>
 +
    <div class="row">
 +
      <div class="col-sm-2">
 +
        <p>Jordan</p>
 +
      </div>
 +
      <div class="col-sm-10">
 +
        <ul>
 +
          <li>Wrote a lab note for the Experiment page</li>
 +
          <li>Reserved room for another outreach discussion</li>
 +
        </ul>
 +
      </div>
 +
    </div>
 +
    <div class="row">
 +
      <div class="col-sm-2">
 +
        <p>Michelle</p>
 +
      </div>
 +
      <div class="col-sm-10">
 +
        <ul style="">
 +
          <li>Ran gel on Golden Gate reactions
 +
            <div class="row">
 +
              <div class="col-sm-6"><img src="https://static.igem.org/mediawiki/2016/9/92/T--Northwestern--08_17_9.png" width="2448" height="3264" alt=""/></div>
 +
            </div>
 +
            <ul><li>The gel shows the inserts and backbone separately at their respective locations. It does not indicate success. M4 is more dim than expected.</li></ul>
 +
          </li>
 +
          <li>Streaked Delisa cells out on plates
 +
            <ul>
 +
              <li>JC8031 on no-antibiotic plate</li>
 +
              <li>JC8031-pClyA-GFP-His on Cam plate</li>
 +
            </ul>
 +
          </li>
 +
        </ul>
 +
      </div>
 +
    </div>
 +
    <div class="row">
 +
      <div class="col-sm-2">
 +
        <p>Paul</p>
 +
      </div>
 +
      <div class="col-sm-10">
 +
        <ul>
 +
          <li>Pelleted 100 mL overnight expression cultures &amp; put them in the freezer</li>
 +
          <li>Emailed grad student listserv asking for help purifying proteins</li>
 +
          <li>Looked through Cas9 purifying procedures </li>
 +
        </ul>
 +
      </div>
 +
    </div>
 +
    <div class="row">
 +
      <div class="col-sm-2">
 +
        <p>Sam</p>
 +
      </div>
 +
      <div class="col-sm-10">
 +
        <ul>
 +
          <li> Email more experts</li>
 +
          <li>Researched questions in the research doc</li>
 +
          <li>Started designing antibiotics forum</li>
 +
        </ul>
 +
      </div>
 +
    </div>
 +
    <div class="row">
 +
      <div class="col-sm-2">
 +
        <p>Sara </p>
 +
      </div>
 +
      <div class="col-sm-10">
 +
        <ul>
 +
          <li>Autoclaved some tips</li>
 +
         
 +
          <li>Lab notebook</li>
 +
        </ul>
 +
      </div>
 +
    </div>
 +
    <div class="row">
 +
      <div class="col-sm-2">
 +
        <p>Shu</p>
 +
      </div>
 +
      <div class="col-sm-10">
 +
        <ul>
 +
          <li>PCR mRFP with Tyler
 +
            <ul>
 +
              <li> 2 x 50µL reactions </li>
 +
              <ul>
 +
                <li>1µL DMSO</li>
 +
                <li>1 µL mRFP backbone</li>
 +
                <li>1 µL Tet Lnrz for Cas9 FWD (10µM)</li>
 +
                <li>0.5 µL mRFP Reverse (10µM)</li>
 +
                <li>21.5 µL water </li>
 +
              </ul>
 +
              <li>Negative Control</li>
 +
              <ul>
 +
                <li>22 µL water</li>
 +
                <li>1µL DMSO</li>
 +
                <li>1 µL Tet Lnrz for Cas9 FWD (10µM)</li>
 +
                <li>1 µL mRFP Reverse (10µM)</li>
 +
              </ul>
 +
              <li>Conditions:
 +
                <div class="row">
 +
                  <div class="col-sm-10"><img src="https://static.igem.org/mediawiki/2016/7/7d/T--Northwestern--08_15_2.png" width="1600" height="280" alt=""/></div>
 +
                </div>
 +
              </li>
 +
              <li>DpnI digested PCR products
 +
              <ul>
 +
                <li>0.5 µL into each 50 µL</li>
 +
                <li>Incubated overnight at room temp</li>
 +
              </ul></li>
 +
              <li>Nanodropped mRFP linearized: 125 ng/µL, 260/230: 2.30</li>
 +
</ul>
 +
          </li>
 +
        </ul>
 +
      </div>
 +
    </div>
 +
    <div class="row">
 +
      <div class="col-sm-2">
 +
        <p>Tyler</p>
 +
      </div>
 +
      <div class="col-sm-10">
 +
        <ul>
 +
          <li>PCR- Linearizing Cas9 for SS
 +
            <ul>
 +
              <li> 2 x 50µL reactions:
 +
                <ul>
 +
                  <li>21.5 µL water</li>
 +
                  <li>1 µL DMSO</li>
 +
                  <li>0.5 µL cas9 1:3</li>
 +
                  <li>1 µL SS_Lnrz_Fwd</li>
 +
                  <li>1 µL SS_Lnrz_Rev</li>
 +
                  <li>25 µL Taq Master Mix </li>
 +
                </ul>
 +
              </li>
 +
              <li> Negative Control: </li>
 +
              <ul>
 +
                <li>22 µL water</li>
 +
                <li>1 µL DMSO</li>
 +
                <li>1 µL SS_Lnrz_Fwd</li>
 +
                <li>1 µL SS_Lnrz_Rev</li>
 +
                <li>25 µL Taq Master Mix</li>
 +
              </ul>
 +
              <li>Conditions:
 +
                <div class="row">
 +
                  <div class="col-sm-10"><img src="https://static.igem.org/mediawiki/2016/c/cd/T--Northwestern--08_11_6.png" width="1600" height="280" alt=""></div>
 +
                </div>
 +
              </li>
 +
              <li>DpnI digest for 2 hours at 37°C</li>
 +
            </ul>
 +
          </li>
 +
          <li>PCR mRFP with Shu</li>
 +
        </ul>
 +
      </div>
 +
    </div>
 
   </article>
 
   </article>
 
<footer id="nav">
 
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Revision as of 21:43, 15 October 2016

Notebook

Wednesday, August 17th

Results:

Sequencing:

saCas9 Gibson Assembly was correctly assembled.

Transformation:

The Gibson assemblies of signal sequences into Cas9 were unsuccessful.

Figure 1: Transformation positive control

Figure 2: Transformation negative control

Figure 3: Gibson assembly positive control

Figure 4: No enzyme negative control

Figure 5: gRNA + mRFP Gibson

Figure 6: INP + Cas9 Gibson

Figure 7: TorA + Cas9 Gibson

Tasks:

Jordan

  • Wrote a lab note for the Experiment page
  • Reserved room for another outreach discussion

Michelle

  • Ran gel on Golden Gate reactions
    • The gel shows the inserts and backbone separately at their respective locations. It does not indicate success. M4 is more dim than expected.
  • Streaked Delisa cells out on plates
    • JC8031 on no-antibiotic plate
    • JC8031-pClyA-GFP-His on Cam plate

Paul

  • Pelleted 100 mL overnight expression cultures & put them in the freezer
  • Emailed grad student listserv asking for help purifying proteins
  • Looked through Cas9 purifying procedures

Sam

  • Email more experts
  • Researched questions in the research doc
  • Started designing antibiotics forum

Sara

  • Autoclaved some tips
  • Lab notebook

Shu

  • PCR mRFP with Tyler
    • 2 x 50µL reactions
      • 1µL DMSO
      • 1 µL mRFP backbone
      • 1 µL Tet Lnrz for Cas9 FWD (10µM)
      • 0.5 µL mRFP Reverse (10µM)
      • 21.5 µL water
    • Negative Control
      • 22 µL water
      • 1µL DMSO
      • 1 µL Tet Lnrz for Cas9 FWD (10µM)
      • 1 µL mRFP Reverse (10µM)
    • Conditions:
    • DpnI digested PCR products
      • 0.5 µL into each 50 µL
      • Incubated overnight at room temp
    • Nanodropped mRFP linearized: 125 ng/µL, 260/230: 2.30

Tyler

  • PCR- Linearizing Cas9 for SS
    • 2 x 50µL reactions:
      • 21.5 µL water
      • 1 µL DMSO
      • 0.5 µL cas9 1:3
      • 1 µL SS_Lnrz_Fwd
      • 1 µL SS_Lnrz_Rev
      • 25 µL Taq Master Mix
    • Negative Control:
      • 22 µL water
      • 1 µL DMSO
      • 1 µL SS_Lnrz_Fwd
      • 1 µL SS_Lnrz_Rev
      • 25 µL Taq Master Mix
    • Conditions:
    • DpnI digest for 2 hours at 37°C
  • PCR mRFP with Shu