Difference between revisions of "Team:USTC-Software"
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<div class="description"> | <div class="description"> | ||
| − | <h2>Description</h2> | + | <h2>Project Description</h2> |
| − | <p> | + | <p>What already done:</p> |
| − | What already done:< | + | <p>We had a long-time brainstorm and find an appropriate project for the team. Although there're many aspects that can be solved by computing, things that can be done perfectly by us seem restricted. Before we finally decide which project to work on, we used to investigate those projects: </p> |
| − | We had a long-time brainstorm and find an appropriate project for the team. Although there're many aspects that can be solved by computing, things that can be done perfectly by us seem restricted. Before we finally decide which project to work on, we used to investigate those projects: < | + | <ol> |
| − | + | <li>GRN (genetic regulatory networks) research</li> | |
| − | + | <li>Software for NgAgo</li> | |
| − | + | <li>CNN application in protein picture analysis</li> | |
| − | + | <li>Biopano further development (Biopano 2.0)</li> | |
| − | + | <li>Aptamer analysis</li> | |
| − | Finally, we discussed with our primary PI Haiyan Liu, and reached an agreement that Biopano has a better prospect than other alternatives. Moreover, a developed Biopano platform can be friendly to users who need to analyze genetic networks, which is part of project 1. After months of surveying, discussing, and brainstorming, our team selected Biopano 2.0 as the ultimate project. < | + | </ol> |
| − | < | + | <p>Finally, we discussed with our primary PI Haiyan Liu, and reached an agreement that Biopano has a better prospect than other alternatives. Moreover, a developed Biopano platform can be friendly to users who need to analyze genetic networks, which is part of project 1. After months of surveying, discussing, and brainstorming, our team selected Biopano 2.0 as the ultimate project.</p> |
| − | Biopano is an open source software based on visual editor servicing for editing large-scale gene networks. It helps in group work as well. Target gene can be licked to the existed network form the public database easily with the searching functions built in the software. The software also supports external plug-in, which allows users adding features they need. News in the second generation are: < | + | |
| − | + | <p>Biopano is an open source software based on visual editor servicing for editing large-scale gene networks. It helps in group work as well. Target gene can be licked to the existed network form the public database easily with the searching functions built in the software. The software also supports external plug-in, which allows users adding features they need. News in the second generation are:</p> | |
| − | + | <ol> | |
| − | + | <li>Real-time simulation for the expression of the gene network.</li> | |
| − | + | <li>To design the prototype gene lines with the truth table.</li> | |
| − | </ | + | <li>To imply the gene network according to the result of the expression.</li> |
| + | <li>To export into other software formats.</li> | ||
| + | </ol> | ||
</div> | </div> | ||
Revision as of 11:28, 30 June 2016
Project Description
What already done:
We had a long-time brainstorm and find an appropriate project for the team. Although there're many aspects that can be solved by computing, things that can be done perfectly by us seem restricted. Before we finally decide which project to work on, we used to investigate those projects:
- GRN (genetic regulatory networks) research
- Software for NgAgo
- CNN application in protein picture analysis
- Biopano further development (Biopano 2.0)
- Aptamer analysis
Finally, we discussed with our primary PI Haiyan Liu, and reached an agreement that Biopano has a better prospect than other alternatives. Moreover, a developed Biopano platform can be friendly to users who need to analyze genetic networks, which is part of project 1. After months of surveying, discussing, and brainstorming, our team selected Biopano 2.0 as the ultimate project.
Biopano is an open source software based on visual editor servicing for editing large-scale gene networks. It helps in group work as well. Target gene can be licked to the existed network form the public database easily with the searching functions built in the software. The software also supports external plug-in, which allows users adding features they need. News in the second generation are:
- Real-time simulation for the expression of the gene network.
- To design the prototype gene lines with the truth table.
- To imply the gene network according to the result of the expression.
- To export into other software formats.
Welcome to iGEM 2016!
Your team has been approved and you are ready to start the iGEM season!
Before you start:
Please read the following pages:
Styling your wiki
You may style this page as you like or you can simply leave the style as it is. You can easily keep the styling and edit the content of these default wiki pages with your project information and completely fulfill the requirement to document your project.
While you may not win Best Wiki with this styling, your team is still eligible for all other awards. This default wiki meets the requirements, it improves navigability and ease of use for visitors, and you should not feel it is necessary to style beyond what has been provided.
Wiki template information
We have created these wiki template pages to help you get started and to help you think about how your team will be evaluated. You can find a list of all the pages tied to awards here at the Pages for awards link. You must edit these pages to be evaluated for medals and awards, but ultimately the design, layout, style and all other elements of your team wiki is up to you!
Editing your wiki
On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world!
Tips
This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started:
- State your accomplishments! Tell people what you have achieved from the start.
- Be clear about what you are doing and how you plan to do this.
- You have a global audience! Consider the different backgrounds that your users come from.
- Make sure information is easy to find; nothing should be more than 3 clicks away.
- Avoid using very small fonts and low contrast colors; information should be easy to read.
- Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the iGEM 2016 calendar
- Have lots of fun!
Inspiration
You can also view other team wikis for inspiration! Here are some examples:
Uploading pictures and files
You can upload your pictures and files to the iGEM 2016 server. Remember to keep all your pictures and files within your team's namespace or at least include your team's name in the file name.
When you upload, set the "Destination Filename" to Team:YourOfficialTeamName/NameOfFile.jpg. (If you don't do this, someone else might upload a different file with the same "Destination Filename", and your file would be erased!)
