Difference between revisions of "Team:USTC-Software/NoteBook"

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<img src="https://static.igem.org/mediawiki/2016/9/93/T--USTC-Software--logo00.png" />
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        <div id="timeline"></div>
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        <section id="section1">
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            <div class="timeline timeline-left"></div>
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<ul class="dropdown menu row ar1" data-dropdown-menu>
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            <h2>2015.11.01</h2>
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<li class="column small-4 large-2 ar0">
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            <p>Begin to recruit team members.</p>
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<a href="https://2016.igem.org/Team:USTC-Software">Home</a>
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            <img src="http://placehold.it/299x220">
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</li>
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            <div class="timeline-section"></div>
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<li class="column small-4 large-2 ar1">
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        </section>
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<a href="https://2016.igem.org/Team:USTC-Software/Project">Project</a>
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        <section id="section2">
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<ul class="menu">
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            <div class="timeline timeline-right"></div>
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<li><a href="https://2016.igem.org/Team:USTC-Software/Description">Description</a></li>
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            <h2>2015.11.24</h2>
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<li><a href="https://2016.igem.org/Team:USTC-Software/Video">Video</a></li>
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            <p>Preliminary investigation of iGEM.</p>
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<li><a href="https://2016.igem.org/Team:USTC-Software/Proof">Proof</a></li>
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            <img src="http://placehold.it/299x220">
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</ul>
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            <div class="timeline-section"></div>
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</li>
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        </section>
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<li class="column small-4 large-2 ar2">
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        <section id="section3">
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<a href="https://2016.igem.org/Team:USTC-Software/HumanPractices">Human Practices</a>
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            <div class="timeline timeline-left"></div>
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</li>
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            <h2>2016.01.25</h2>
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<li class="column small-4 large-2 ar3">
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            <p>Begin to learn Synthetic Biology and recommend every one to learn difference things based on their interest.</p>
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<a href="https://2016.igem.org/Team:USTC-Software/Requirements">Requirments</a>
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            <p>Such as someone who want to join back end, he should learn python, github and so on.</p>
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<ul class="menu">
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            <img src="http://placehold.it/299x220">
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<li><a href="https://2016.igem.org/Team:USTC-Software/Medals">Medals</a></li>
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            <div class="timeline-section"></div>
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<li><a href="https://2016.igem.org/Team:USTC-Software/Safety">Safety</a></li>
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        </section>
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<li><a href="https://2016.igem.org/Team:USTC-Software/Collaborations">Collaborations</a></li>
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        <section id="section4">
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</ul>
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            <div class="timeline timeline-right"></div>
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</li>
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            <h2>2016.02.28</h2>
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<li class="column small-4 large-2 ar4">
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            <p>First formal meeting , start to research the previous projects and set up five groups: back end, front end, biology, wiki and art.</p>
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<a href="https://2016.igem.org/Team:USTC-Software/Notebook">Notebook</a>
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            <img src="http://placehold.it/299x220">
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</li>
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            <div class="timeline-section"></div>
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<li class="column small-4 large-2 ar5">
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        </section>
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<a href="https://2016.igem.org/Team:USTC-Software/Team">Team</a>
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        <section id="section5">
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<ul class="menu">
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            <div class="timeline timeline-left"></div>
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<li><a href="https://2016.igem.org/Team:USTC-Software/Members">Members</a></li>
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            <h2>2016.03.09</h2>
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<li><a href="https://2016.igem.org/Team:USTC-Software/Attributions">Attributions</a></li>
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            <p>Second formal meeting , we discussed lots of ideas. Such as a game that can solve biology problems,  design RNA and so on.</p>
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</ul>
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            <img src="http://placehold.it/299x220">
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</li>
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            <div class="timeline-section"></div>
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</ul>
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        </section>
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        <section>
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<div class="row ar2">
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            <div class="timeline timeline-left"></div>
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<div class="column ar0 show-for-large large-3">
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            <h2>2016.03.17</h2>
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<div id="navigation-bar">
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            <p>Third formal meeting. our team elected the leader and manager. Determine the members of each group.</p>
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<ul class="menu vertical" data-magellan>
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            <img src="http://placehold.it/299x220">
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<li>
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            <div class="timeline-section"></div>
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<a href="#HFUT-China">HFUT-China</a>
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        </section>
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</li>
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        <section>
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<li>
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            <div class="timeline timeline-left"></div>
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<a href="#USTC">USTC</a>
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            <h2>2016.03.30</h2>
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</li>
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            <p>Fourth formal meeting, start reading  some papers. And determine meeting style, each meeting  every group had 5-10 minutes to display what they did. Then, the group had their own meeting to discuss the problems and try to solve them.</p>
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<li>
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            <img src="http://placehold.it/299x220">
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<a href="#SJTU-Software">SJTU-Software</a>
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            <div class="timeline-section"></div>
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</li>
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        </section>
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</ul>
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        <section>
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</div>
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            <div class="timeline timeline-left"></div>
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</div>
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            <h2>2016.04.10</h2>
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            <p>Fifth formal meeting, Biological group report their research. We discussed the feasibility of each idea, and we determine several topics.</p>
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<div class="column ar1 small-12 large-9">
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            <img src="http://placehold.it/299x220">
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<div class="row ar0-0" id="HFUT-China" data-magellan-target="HFUT-China">
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            <div class="timeline-section"></div>
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<hr />
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        </section>
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<div class="column small-12 large-8 ar0 textcontainer">
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        <section>
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<h1><a href="#HFUT-China">HFUT-China</a></h1>
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            <div class="timeline timeline-left"></div>
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<p>
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            <h2>2016.04.20</h2>
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We are invited to test the front end of the project of the team HFUT-China for finding bugs and fix them. We found four bugs and design flaws.
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            <p>Sixth formal meeting, continue discuss the topic of our project. And we decided to make a software based on web page.  Meanwhile, We discuss the human practice of Science and Technology Week. And  we designed the questionnaire.</p>
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</p>
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            <div class="timeline-section"></div>
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<span style="font-weight:bold">1.</span> When we clicked the button on the 'project' page to expand the gene chain list and delete designated gene chain, it might occasionally fail to delete although a notice of successful deletion is displayed. We discovered that it was caused by transaction locks of the database, which led to a failed concurrent Ajax request. This failure cannot be detected by the program, which would not stop the front end popping a successful notice.
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        </section>
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</p>
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        <section>
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<p>
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            <div class="timeline timeline-left"></div>
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<span style="font-weight:bold">2.</span> The dragging-up of the recommending gene chain in the 'design' page might fail occasionally and the dragging function collapsed meanwhile until we refreshed it. It was diagnosed that problems were gestated in the interaction between the action scopes of AngularJS and NG-sortable database. We fixed it once after the bug was detected.
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            <h2>2016.05.14</h2>
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</p>
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            <p>Science and Technology Week begin, we  introduced elementary knowledge of genetics to citizens by poster presentation and distribute questionnaire.</p>
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<p>
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            <img src="http://placehold.it/299x220">
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<span style="font-weight:bold">3.</span> We found that there was not a clear button for registration, which made it difficult for users to register. It might affect the user experience.
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            <div class="timeline-section"></div>
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</p>
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        </section>
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<p>
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        <section>
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<span style="font-weight:bold">4.</span> Expanding the relationship network in the 'gene relationship' page may lead to the overlapping of the balls of surrounding genes.
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            <div class="timeline timeline-left"></div>
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</p>
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            <h2>2016.5.28</h2>
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<p>
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            <p>After discuss with our PI Professor Liu Haiyan, we decided to continue the work of 2014 USTC-Software, We named our project biopano2.0. We discussed together. Front-end and Back-end groups evaluated Project group’s ideas in the possibility of technology.</p>
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We spent days on fixing bugs above and succeeded eventually. This experience contributed much on strengthening the bond between the team HFUT-China and us.
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            <img src="http://placehold.it/299x220">
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</p>
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            <div class="timeline-section"></div>
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</div>
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        </section>
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<div class="column small-12 large-4 ar1 imgcontainer">
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        <section>
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<img src="https://static.igem.org/mediawiki/2016/2/22/T--USTC-Software--collaborations05.jpg" />
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            <div class="timeline timeline-left"></div>
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<img src="https://static.igem.org/mediawiki/2016/7/75/T--USTC-Software--collaborations06.jpg" />
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            <h2>2016.6.01</h2>
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</div>
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            <p>We applied a working place in the library, the 204 room.</p>
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</div>
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            <img src="http://placehold.it/299x220">
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            <div class="timeline-section"></div>
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<div class="row ar1" id="USTC" data-magellan-target="USTC">
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        </section>
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<hr />
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        <section>
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<div class="column small-12 large-12 ar0 textcontainer">
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            <div class="timeline timeline-left"></div>
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<h1><a href="#USTC">USTC</a></h1>
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            <h2>2016.6.28</h2>
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<p>
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            <p>Summer vacation begin.Publish the standard for selecting memebers for the Giant Jambore. Every group working hard.</p>
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The procedure of the team USTC involved processing images of fluorescent cells. However, it required distinguishing the part of fluorescent cells from those non-fluorescent ones and the background as the pretreatment.
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            <img src="http://placehold.it/299x220">
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</p>
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            <div class="timeline-section"></div>
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<p>
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        </section>
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We calculated the distribution of the greyscale of images. Based on the distribution, we can determine which pixels may belong to fluorescent cells and which pixels may not.
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        <section>
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</p>
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            <div class="timeline timeline-left"></div>
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<p>
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            <h2>2016.7.5</h2>
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Therefore we are able to cut out the part of fluorescent cells from remainders, which helped the team USTC solve this little tiresome problem.
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            <p>Sixth formal meeting, we decided our project should be easily extened. And we discussed more functions.</p>
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</p>
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            <img src="http://placehold.it/299x220">
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</div>
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            <div class="timeline-section"></div>
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<div class="column small-12 large-4 ar1 imgcontainer">
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        </section>
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<img src="https://static.igem.org/mediawiki/2016/2/26/T--USTC-Software--collaborations01.jpg" />
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        <section>
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</div>
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            <div class="timeline timeline-left"></div>
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<div class="column small-12 large-4 ar2 imgcontainer">
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            <h2>2016.7.25</h2>
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<img src="https://static.igem.org/mediawiki/2016/a/ab/T--USTC-Software--collaborations04.jpg" />
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            <p>Great summer.</p>
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</div>
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            <img src="http://placehold.it/299x220">
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<div class="column small-12 large-4 ar3 imgcontainer">
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            <div class="timeline-section"></div>
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<img src="https://static.igem.org/mediawiki/2016/d/df/T--USTC-Software--collaborations03.jpg" />
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        </section>
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</div>
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        <section>
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</div>
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            <div class="timeline timeline-left"></div>
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            <h2>2016.8.7</h2>
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<div class="row ar2" id="SJTU-Software" data-magellan-target="SJTU-Software">
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            <p>Attended Asia-Pacific iGEM Conference in Taiwan.</p>
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<hr />
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            <img src="http://placehold.it/299x220">
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<div class="column small-12 large-8 end ar0 textcontainer">
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            <div class="timeline-section"></div>
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<h1><a href="#SJTU-Software">SJTU-Software</a></h1>
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        </section>
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<p>
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        <section>
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We accepted the invitation from the team SJTU-Software to fill out their questionnaires. They told us that our opinions and advices on their project really mattered, which we were truly glad to see.
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            <div class="timeline timeline-left"></div>
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</p>
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            <h2>2016.8.17</h2>
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</div>
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            <p>Select members for the Giant Jamboree.</p>
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</div>
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            <img src="http://placehold.it/299x220">
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</div>
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            <div class="timeline-section"></div>
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</div>
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        </section>
 +
        <section>
 +
            <div class="timeline timeline-left"></div>
 +
            <h2>2016.8.26</h2>
 +
            <p>Went to ShangHai to apply for visas.</p>
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            <img src="http://placehold.it/299x220">
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            <div class="timeline-section"></div>
 +
        </section>
 +
        <section>
 +
            <div class="timeline timeline-left"></div>
 +
            <h2>2016.9.4</h2>
 +
            <p>First meeting of new semester, each group introduced their schedule, and we discussed our time table. We decided to do abacus.</p>
 +
            <img src="http://placehold.it/299x220">
 +
            <div class="timeline-section"></div>
 +
        </section>
 +
        <section>
 +
            <div class="timeline timeline-left"></div>
 +
            <h2>2016.9.30</h2>
 +
            <p>We introduce our software to schoolmates who major in biology. And we gain some feedback.</p>
 +
            <img src="http://placehold.it/299x220">
 +
            <div class="timeline-section"></div>
 +
        </section>
 +
        <section>
 +
            <div class="timeline timeline-left"></div>
 +
            <h2>2016.10.2</h2>
 +
            <p>we begin to make docker.  Front-end and Back-end started system integration test.</p>
 +
            <img src="http://placehold.it/299x220">
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            <div class="timeline-section"></div>
 +
        </section>
 +
        <section>
 +
            <div class="timeline timeline-left"></div>
 +
            <h2>2016.10.6</h2>
 +
            <p>We submit our team banner.</p>
 +
            <img src="http://placehold.it/299x220">
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            <div class="timeline-section"></div>
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        </section>
 +
        <section>
 +
            <div class="timeline timeline-left"></div>
 +
            <h2>2016.10.13</h2>
 +
            <p>We finished our judging form.</p>
 +
            <img src="http://placehold.it/299x220">
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            <div class="timeline-section"></div>
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        </section>
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    </main>
 
</div>
 
</div>
 
 

Revision as of 09:58, 19 October 2016

2015.11.01

Begin to recruit team members.

2015.11.24

Preliminary investigation of iGEM.

2016.01.25

Begin to learn Synthetic Biology and recommend every one to learn difference things based on their interest.

Such as someone who want to join back end, he should learn python, github and so on.

2016.02.28

First formal meeting , start to research the previous projects and set up five groups: back end, front end, biology, wiki and art.

2016.03.09

Second formal meeting , we discussed lots of ideas. Such as a game that can solve biology problems, design RNA and so on.

2016.03.17

Third formal meeting. our team elected the leader and manager. Determine the members of each group.

2016.03.30

Fourth formal meeting, start reading some papers. And determine meeting style, each meeting every group had 5-10 minutes to display what they did. Then, the group had their own meeting to discuss the problems and try to solve them.

2016.04.10

Fifth formal meeting, Biological group report their research. We discussed the feasibility of each idea, and we determine several topics.

2016.04.20

Sixth formal meeting, continue discuss the topic of our project. And we decided to make a software based on web page. Meanwhile, We discuss the human practice of Science and Technology Week. And we designed the questionnaire.

2016.05.14

Science and Technology Week begin, we  introduced elementary knowledge of genetics to citizens by poster presentation and distribute questionnaire.

2016.5.28

After discuss with our PI Professor Liu Haiyan, we decided to continue the work of 2014 USTC-Software, We named our project biopano2.0. We discussed together. Front-end and Back-end groups evaluated Project group’s ideas in the possibility of technology.

2016.6.01

We applied a working place in the library, the 204 room.

2016.6.28

Summer vacation begin.Publish the standard for selecting memebers for the Giant Jambore. Every group working hard.

2016.7.5

Sixth formal meeting, we decided our project should be easily extened. And we discussed more functions.

2016.7.25

Great summer.

2016.8.7

Attended Asia-Pacific iGEM Conference in Taiwan.

2016.8.17

Select members for the Giant Jamboree.

2016.8.26

Went to ShangHai to apply for visas.

2016.9.4

First meeting of new semester, each group introduced their schedule, and we discussed our time table. We decided to do abacus.

2016.9.30

We introduce our software to schoolmates who major in biology. And we gain some feedback.

2016.10.2

we begin to make docker. Front-end and Back-end started system integration test.

2016.10.6

We submit our team banner.

2016.10.13

We finished our judging form.

Links

USTC

USTC

USTC

USTC

Contact Us

96, Jinzhai RD.

Baohe DST.

Hefei, Anhui, PRC