Difference between revisions of "Team:Cardiff Wales"

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<p>Laboratory-based tests for sexually transmitted infections (i.e nucleic acid amplification)require specialised infrastructure and equipment for optimal performance <sup><a href="">[1]</a></sup>.
<h3>Our Problem</h3>
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STI testing is often conducted in resource-constrained environments where such resources are unavailable, limiting the use of test results in disease management,potentially impacting on patient prognosis <sup><a href="">[2]</a></sup>. Point-of-care testing (POCT) is operated outside of clinical laboratories, near the site and at the time of patient admission <sup><a href="">[3]</a></sup>. POCT has the potential to significantly reduce the impact of STI under these circumstances <sup><a href="">[4]</a></sup>.</p>  
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Inefficient diagnosis of STIs can have negative socioeconomic impacts. Point of care diagnostics is gradually making its way to the market in a bid for greater efficiency, more sensitive results, and lower costs. In fact, the first HIV home testing kit was legalised in the UK just last year. For further benefits, we propose a novel point of care diagnostic tool using a split luciferase and dCas 9 system.</P>
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<p>Cardiff_Wales has developed a novel bioluminescence detection system for point-of-care diagnostic testing, termed  
<h3>Our Solution</h3>
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Cardiff_Wales has developed a novel bioluminescence detection system for point-of-care diagnostic testing, termed  
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<a href="https://2016.igem.org/Team:Cardiff_Wales/Description">Cas-Find</a>. In this system a <i>Streptococcus pyogenes</i> dCas9 isoform codon optimised for <i> Escherichia coli </i> is fused to the C- or N- terminal fragments of a thermostable pH-tolerant <i>Photinus pyralis</i> luciferase mutant. The coexpression of sgRNA constructs targets these chimeric proteins to adjacent sequences, resulting in the reconstitution of luciferase activity and bioluminescence in the presence of luciferin. This constitutes the positive signal for DNA detection. We aimed to undertake a proof-of-concept study of this system using sgRNA targeted to the <i>E. coli</i> 16S rRNA locus, describing both the activity of this system <i>in vitro</i>, and the optimum distance between sgRNA targets.</p>
 
<a href="https://2016.igem.org/Team:Cardiff_Wales/Description">Cas-Find</a>. In this system a <i>Streptococcus pyogenes</i> dCas9 isoform codon optimised for <i> Escherichia coli </i> is fused to the C- or N- terminal fragments of a thermostable pH-tolerant <i>Photinus pyralis</i> luciferase mutant. The coexpression of sgRNA constructs targets these chimeric proteins to adjacent sequences, resulting in the reconstitution of luciferase activity and bioluminescence in the presence of luciferin. This constitutes the positive signal for DNA detection. We aimed to undertake a proof-of-concept study of this system using sgRNA targeted to the <i>E. coli</i> 16S rRNA locus, describing both the activity of this system <i>in vitro</i>, and the optimum distance between sgRNA targets.</p>
  
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<p>Cardiff_Wales have improved the function of the <i>Vibrio Fischeri</i> LUX operon, initially submitted to the Standard Registry of Parts by <a href="http://partsregistry.org/Part:BBa_K325909">Cambridge</a> in 2010 and undertaken collabarative work with Oxford, WasU_StLouis and Saclay.</p>
  
<p>Cardiff_Wales have improved the function of the <i>Vibrio Fischeri</i> <a href="http://partsregistry.org/Part:BBa_K325909> LUX operon</a> initially described Cambridge in 2010. </p>
 
 
<p>Our <a href="https://2016.igem.org/Team:Cardiff_Wales/Collaborations">Collaborations</a> allowed other iGEM teams to improve their projects by taking advantage of the research facilities available at Cardiff University</p> 
 
   
 
 
<p>A strength of our project involves our <a href="https://2016.igem.org/Team:Cardiff_Wales/Integrated_Practices"> Integrated Human Practices</a> in which we document our interactions with experts in the ethical use of diagnostic kits, the rules surrounding the use of GM products as well as our involvement in numerous outreach activites.</p>
 
 
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{{Team:Cardiff Wales/Footer}}
 
{{Team:Cardiff Wales/Footer}}

Revision as of 14:06, 19 October 2016

Welcome


Hi, and welcome to the Cardiff_Wales iGEM2016 team. As the first team from our country to enter iGEM, we proudly represent Wales on the international stage.

Laboratory-based tests for sexually transmitted infections (i.e nucleic acid amplification)require specialised infrastructure and equipment for optimal performance [1]. STI testing is often conducted in resource-constrained environments where such resources are unavailable, limiting the use of test results in disease management,potentially impacting on patient prognosis [2]. Point-of-care testing (POCT) is operated outside of clinical laboratories, near the site and at the time of patient admission [3]. POCT has the potential to significantly reduce the impact of STI under these circumstances [4].

Cardiff_Wales has developed a novel bioluminescence detection system for point-of-care diagnostic testing, termed Cas-Find. In this system a Streptococcus pyogenes dCas9 isoform codon optimised for Escherichia coli is fused to the C- or N- terminal fragments of a thermostable pH-tolerant Photinus pyralis luciferase mutant. The coexpression of sgRNA constructs targets these chimeric proteins to adjacent sequences, resulting in the reconstitution of luciferase activity and bioluminescence in the presence of luciferin. This constitutes the positive signal for DNA detection. We aimed to undertake a proof-of-concept study of this system using sgRNA targeted to the E. coli 16S rRNA locus, describing both the activity of this system in vitro, and the optimum distance between sgRNA targets.

Cardiff_Wales have improved the function of the Vibrio Fischeri LUX operon, initially submitted to the Standard Registry of Parts by Cambridge in 2010 and undertaken collabarative work with Oxford, WasU_StLouis and Saclay.

Cardiff_Wales