Difference between revisions of "Team:Slovenia/Integrated Practices"

Line 129: Line 129:
 
     </figure> \
 
     </figure> \
 
</div> \
 
</div> \
−
<p  style="text-align:justify">Researchers are scientists concerned with the basic idea of the project, with the possibility of its execution, with the proof of the concept - in short, people who advise if the idea is even feasible. They do not all need to be synthetic biologists as the teams are encouraged to search among experts in other fields as well. Medical doctors, mechanical and electrical engineers, biologists, biotechnologists, (bio)chemists, computer scientists and many others have great and important ideas and considerations to contribute to the field.  \
+
<p  style="text-align:justify">Researchers are scientists concerned with the basic idea of the project, with the possibility of its execution, with the proof of the concept - in short, people who advise if the idea is even feasible. They do not all need to be synthetic biologists as the teams are encouraged to search among experts in other fields as well. Medical doctors, mechanical and electrical engineers, biologists, biotechnologists, (bio)chemists, computer scientists and many others have great ideas and considerations to contribute to the field.  \
−
With the aim of designing foundational technology that could be some day applied to treatment of disease such as the Parkinson’s disease and diabetes we searched for appropriate experts in the field. We consulted prof. dr. Marko Živin, MD who deals with damage, plasticity and regeneration of nerves and muscles and his junior researcher, Kaja Kolmarič. They were extremely receptive to our idea of threating neurological disease with release of therapeutic protein from patient’s own cells, but suggested that optogenetic approach might be too invasive for an organ as sensitive and crucial as the brain, while chemical inducers of dimerization might have many side effects. It was their own research with ultrasound that inspired us and led to a shift in the emphasis of our project and resulted in ultrasound stimulation (US) becoming the focus of it. After exposure to the ideas on the potential use of ultrasound, team members returned to the drawing board and each came up with a project idea mainly tailored to ultrasound stimulation but still incorporating our <a href="https://2016.igem.org/Team:Slovenia/Notebook/Proposals">initial idea of fast response</a> <a href = "#fig3">Figure 1</a>. </p><p style = "clear:both;"></p> \
+
With the aim of designing foundational technology that could some day be applied to treatment of disease such as the Parkinson’s disease and diabetes we searched for appropriate experts in the field. We consulted prof. dr. Marko Živin, MD who deals with damage, plasticity and regeneration of nerves and muscles and his junior researcher, Kaja Kolmarič. They were extremely receptive to our idea of treating neurological diseases with release of therapeutic protein from patient’s own cells. They suggested, however, that optogenetic approach might be too invasive for an organ as sensitive and crucial as the brain, while chemical inducers of dimerization might have many side effects. It was their own research with ultrasound that inspired us and led to a shift in the focus of our project towards ultrasound stimulation (US). After exposure to the ideas on the potential use of ultrasound, team members returned to the drawing board and each came up with a project idea mainly tailored to ultrasound stimulation but still incorporating our <a href="https://2016.igem.org/Team:Slovenia/Notebook/Proposals">initial idea of fast response</a> <a href = "#fig3">Figure 1</a>. </p><p style = "clear:both;"></p> \
 
<div style = "clear:both; float:left;"> \
 
<div style = "clear:both; float:left;"> \
 
     <figure id = "fig4"> \
 
     <figure id = "fig4"> \
Line 153: Line 153:
 
</figure> \
 
</figure> \
 
</div> \
 
</div> \
−
<p  style="text-align:justify">Whereas researchers are interested primarily on foundational advance, medical doctors who work with patients every day are more prone to search for readily applicable and patient oriented implications. \
+
<p  style="text-align:justify">While researchers are interested primarily on foundational advance, medical doctors who work with patients every day are more likely to search for readily applicable and patient oriented implications. \
−
After deciding to focus on ultrasound stimulation we decided to consult medical experts in the field of radiology for advice and consultation. For that reason, we talked to doc. dr. Katarina Šurlan Popovič, MD, radiologist in order to present her our idea and hear her ideas. She was fascinated with potential connection of computed tomography (CT) and ultrasound (US) in order to obtain the benefit for patients. We are quoting her “I would really like to see you develop the model for US stimulation and be the first to try it!”. We took her eagerness to heart and decided to develop a model of ultrasound propagation through the tissue which could show us how in the future an individualized approach could be used. For instance, CT would be obtained for each patient and program would identify the tissue by their characteristics and position the US probes to obtain <a href="https://2016.igem.org/Team:Slovenia/Hardware">focused regions of high pressure on the selected part of the brain</a> <a href = "#fig4">Figure 1</a>. </p> \
+
After deciding to focus on ultrasound stimulation we decided to consult medical experts in the field of radiology. For that reason, we talked to doc. dr. Katarina Šurlan Popovič, MD, radiologist and presented our idea to her. She was fascinated with potential connection of computed tomography (CT) and ultrasound (US). We are quoting her “I would really like to see you develop the model for US stimulation and be the first to try it!”. We took her eagerness to heart and decided to develop a model of ultrasound propagation through the tissue which could show us how in the future an individualized approach could be used. For instance, CT would be obtained for each patient and program would identify the tissue by their characteristics and position the US probes to obtain <a href="https://2016.igem.org/Team:Slovenia/Hardware">focused regions of high pressure on the selected part of the brain</a> <a href = "#fig4">Figure 1</a>. </p> \
 
<div style = "clear: both; float:left"> \
 
<div style = "clear: both; float:left"> \
 
<figure id = "fig5"> \
 
<figure id = "fig5"> \
Line 161: Line 161:
 
</figure> \
 
</figure> \
 
</div> \
 
</div> \
−
<p  style="text-align:justify">By exploring further potential applications and reading the literature, asist. dr. Matjaž Sever, MD hematologist offered us help in his area of expertise. He went even a step further – by acknowledging how demanding the project is and how incredible it seems to develop it in half a year, he suggested making the list of all the potential hormones, peptides and proteins which might benefit if secreted by our quick system. Even when the iGEM competition finishes, our work does not – it is just a new beginning for more amazing findings to happen. It is not realistic to expect from us to start a project from scratch and develop something completely new in that short amount of time and optimize everything for medical usage. For that reason, our human practice investigation helped us realize how potentially beneficial our project can be in medicine and make long term partnerships and plans. If one could make a significant medical application, that person should have started from already known foundations. We did not. Instead, we are making the paradigm shift which will for sure find several applications in near future, maybe even by some future iGEM teams <a href = "#fig5">Figure 2</a>. </p><p style = "clear:both;"></p>';
+
<p  style="text-align:justify">Asist. dr. Matjaž Sever, MD hematologist offered us help in his area of expertise by exploring further potential applications and reading the literature. He even went a step further – by acknowledging how demanding the project is and how incredible it seems to develop it in half a year, he suggested making the list of all the potential hormones, peptides and proteins which might benefit if secreted by our quick system. Even when the iGEM competition finishes, our work does not – it is just a new beginning for more amazing findings to happen. It is not realistic to expect from us to start a project from scratch and develop something completely new in that short amount of time and optimize everything for medical usage. For that reason, our human practice investigation helped us realize how potentially beneficial our project can be in medicine and make long term partnerships and plans. If one could make a significant medical application, that person should have started from already known foundations. We did not. Instead, we are making the paradigm shift which will for sure find several applications in near future, maybe even by some future iGEM teams <a href = "#fig5">Figure 2</a>. </p><p style = "clear:both;"></p>';
 
myId.data = "doctors";
 
myId.data = "doctors";
 
}
 
}

Revision as of 14:58, 19 October 2016

Integrated practices

Proposals Integrated practices Engagement

 Integrated Practices

Various extraordinary synthetic biology projects can be depicted as boats and ships, seeking the safety of a harbor in the wide ocean, their main purpose finding the final destination.

No matter how different or fascinating the boat is, its main purpose is to safely arrive to the harbor. Before there were modern GPS systems, sailors had to rely on using natural events and signs. One of the main was the lodestar, the most shining star, which is always a good orientation point.

Similarly, many research projects can struggle no matter how fascinating they are. They might lose the feeling of reality and just travel for the sake of travel.

In order to give the right coordinates, which showed to be of high importance in our case, we developed a new symbol for future iGEM teams who might apply their projects to the medical field – community oriented lodestar. No matter if the team is competing in the foundational advance or medical application section, maximization of the benefit to society should be the number one priority.

project scheme patients scientists iGEMers researches doctors

For content click on THE star


Consequently, if ever lost, teams should just find the shining star and orient in respect to it. By thorough discussions and careful implementation of ideas provided by all the participants involved in the dialogue, iGEM team should be able to present at the Giant Jamboree the most of the project –completely analyzed project in real life. It’s not only the idea that influences the minds and thinking of individuals involved, the relationship is reciprocal. People involved have a great deal of influence over the idea itself as well. The concept will be explained on our example. While competing in the foundational advance track we have considered many possible medical applications of our project, particularly diabetes, Parkinson’s disease and hemorrhagic diseases, since medicine is the field of study of several students and other students and mentors have a soft spot for this direction. .