Team:Aalto-Helsinki/Project
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Project
Overview
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Did you know...
Cyanobacteria range in size from 0.5 to 60 micrometers in diameter which represents one of the largest prokaryotic organism.
Simple, Watson. It's all about Detection.
Background
When studying toxicity effects of cyanobacterial toxin, microcystin-LR, to higher eukaryotic cells we found out that it causes oxidative stress in cells. This is due to inhibition of protein phosphatases 1 and 2 which then leads to excessive phosphorylation of target proteins. Excessive phosphorylation in turn increases formation of reactive oxygen species (ROS), causing oxidative stress response. This is presented in the figure 1. We found out that these toxicity effects are similar in lower eukaryotes such as yeast. Realizing this made us think how we could use MC-LR’s natural toxicity effects to sense the toxin concentrations.
Stress Promoters
From various articles it came out that oxidative stress increases the activity certain transcription factors in Saccharomyces cerevisiae cells. Two main transcription factors, which activation is induced by oxidative stress are Skn7p and Yap1p. These transcription factors have specific binding sites in promoter areas of genes responsible from effects of oxidative stress. Skn7p binds to OSRE (oxidative stress response element) and Yap1p binds to YRE (Yap1p response element). Few of the best characterized promoter areas, where these transcription factors bind are for genes TSA1, CTT1 and CPP1. We choose to look into these more deeply and this led us into an idea of creating a sensor by fusing one of these promoter areas with yellow fluorescent protein (Venus) production and implementing this into S. cerevisiae.
This kind of sensor would thus produce fluorescent signal when production of transcription factors Skn7p and Yap1p has been induced – meaning when the S. cerevisiae cells encounter stress. As microcystin is rather effective stress producing factor we can estimate that in lake waters that is the main thing that causes oxidative stress in yeast within a short time range. This leads to our hypothesis: fluorescent colour produced by engineered S. cerevisiae is proportional to microcystin concentration in measured water sample.
Transporter
An important prerequisite for the stress promoters to work is that the toxin must be imported inside the cell. Microcystin-LR doesn’t pass the membrane without the help of specific transporter proteins. In human cells OATP transporter (organic anion transport peptide) is responsible for MC’s transport. Among Valerio et al. yeast strain VL3 has the most similar transporter from S. cerevisiae strain. We also did a blast to confirm this data and come to a conclusion that the human OATP transporter and QDR2 transporter form VL3 are really similar. Transporters form all common lab strains differ significantly from these.
It has been confirmed that this QDR2 transporter from VL3 can transport microcystin inside the yeast cell (Valerio et al.). We reasoned that by replacing the original transporter of S. cerevisiae lab strain (W303a/SS238) with QDR2 transporter we could make this strain able to transport the toxin. The reason why we didn’t want to work with VL3 was that it’s used and optimized for wine production, not for lab work. We though planned to use it as a positive control in our experiments to see how the changing of transporter affects the toxicity effect.
Did you know...
The oldest known fossils are cyanobacteria from Archaean rocks of western Australia, dated 3.5 billion years old.
Degradation
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