Difference between revisions of "Team:BostonU HW/US temp"

 
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         <li class="sliding-middle-out dropdown">
 
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             <a href="#" class="dropbtn">TEAM </a>
 
             <a href="#" class="dropbtn">TEAM </a>
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             <div class="dropdown-content">
 
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                   <a href="https://2016.igem.org/Team:BostonU_HW/Team">Meet the Team </a>
 
                   <a href="https://2016.igem.org/Team:BostonU_HW/Team">Meet the Team </a>
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         <li class="sliding-middle-out dropdown">
 
         <li class="sliding-middle-out dropdown">
 
             <a href="#" class="dropbtn">PROJECT</a>
 
             <a href="#" class="dropbtn">PROJECT</a>
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             <div class="dropdown-content">
 
             <div class="dropdown-content">
 
                   <a href="https://2016.igem.org/Team:BostonU_HW/Results">Results</a>
 
                   <a href="https://2016.igem.org/Team:BostonU_HW/Results">Results</a>
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                   <a href="https://2016.igem.org/Team:BostonU_HW/Demonstrate">Project Build</a>
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                   <a href="https://2016.igem.org/Team:BostonU_HW/Demonstrate">Demonstration</a>
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                   <a href="https://2016.igem.org/Team:BostonU_HW/Proof">Application</a>
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                   <a href="https://2016.igem.org/Team:BostonU_HW/Proof">Proof</a>
 
                   <a href="https://2016.igem.org/Team:BostonU_HW/Design">Documentation</a>
 
                   <a href="https://2016.igem.org/Team:BostonU_HW/Design">Documentation</a>
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                   <a href="https://2016.igem.org/Team:BostonU_HW/Notebook">Timeline</a>
 
                   <a href="https://2016.igem.org/Team:BostonU_HW/Notebook">Timeline</a>
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                   <a href="https://2016.igem.org/Team:BostonU_HW/Hardware">Hardware</a>
 
                   <a href="https://2016.igem.org/Team:BostonU_HW/Hardware">Hardware</a>
 
                   <a href="https://2016.igem.org/Team:BostonU_HW/Software">Software</a>
 
                   <a href="https://2016.igem.org/Team:BostonU_HW/Software">Software</a>
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                  <a href="https://2016.igem.org/Team:BostonU_HW/Measurement">Measurement</a>
 
−
                  <a href="https://2016.igem.org/Team:BostonU_HW/Model">Model</a>
 
 
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            <a href="#" class="dropbtn">MEDAL CRITERIA </a>
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            <div class="dropdown-content">
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                  <a href="https://2016.igem.org/Team:BostonU_HW/Bronze">Bronze</a>
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                  <a href="https://2016.igem.org/Team:BostonU_HW/Silver">Silver</a>
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                  <a href="https://2016.igem.org/Team:BostonU_HW/Gold">Gold</a>
 +
                  <a href="https://2016.igem.org/Team:BostonU_HW/AboveAndBeyond">Above & Beyond</a>
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<body>
 
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<!-- PAGE TITLE BANNER -->
 
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<h3 id="pageTitle">ATTRIBUTIONS</h3>
 
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  <div class="col-md-8" style="font-size: 4em;">We stand on the <br><br><br> shoulders of giants.</div>
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<div class="row" style="padding-top:50px; padding-bottom:50px;">
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  <div class="col-md-1"></div>
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−
  <div class="col-md-10" style="font-size: 1em;"> Our work would not have been possible without the foundations laid by our mentors. Our work would not have been possible without the foundations laid by our mentors. Neptune’s microfluidic design and fabrication tool leverages projects such as Fluigi Place and Route, Mint description language, MakerFluidics, and 3DuF in order to provide the most intuitive and cohesive experience for users. These projects have been built and expanded on by our graduate student mentors. We would like to thank our mentors for all of the work they have done to allow us to bring Neptune to life.
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  <div class="col-md-1"></div>
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</div>
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<div class="row" style="padding-top:100px; padding-bottom:100px;">
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 +
  
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 +
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 +
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 +
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    <div class="row">
 
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      <div class="col-md-3">
 
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      </div>
 
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      <div class="col-md-9">
 
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        <div style="font-size: 2em">Fluigi | Radhakrishna Sanka</div>
 
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      </div>
 
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    </div>
 
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    <div class="row" style="padding-top:20px; padding-bottom:20px;">
 
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      <div class="col-md-3">
 
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        <img src="https://static.igem.org/mediawiki/2016/2/2f/T--BostonU_HW--FluigiLogo_rcwolf.png" width="90%" style="margin:auto;">
 
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      </div>
 
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      <div class="col-md-6">
 
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        A place and route tool for microfluidic devices. Fluigi takes a MINT file as input and strategically routes the features specified in the MINT into an optimized microfluidic design. Fluigi outputs the design in a series of visual formats: SVG files (which can be used to mill out the different layers of the microfluidic chip using a CNC mill), a JSON file (which can be used to visualize the microfluidic design with 3DuF), and EPS files (which can be used to build the chip using photolithography if the user so chooses).
 
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      </div>
 
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      <div class="col-md-3">
 
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        <img src="https://static.igem.org/mediawiki/2016/c/c4/KrishnaSquare_rcwolf.png" width="100%" height="100%" style="border-radius: 50%;">
 
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      </div>
 
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    </div>
 
  
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    <br>
 
  
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        <div class="row">
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<body>
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      <div class="col-md-3">
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<!-- PAGE TITLE BANNER -->
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      </div>
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  <div id="greyWrapper">  
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      <div class="col-md-9">
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     <div class="pageBanner">
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        <div style="font-size: 2em">MINT | Radhakrishna Sanka</div>
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       <h3 id="pageTitle">TIMELINE</h3>
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      </div>
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    </div>
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     <div class="row" style="padding-top:20px; padding-bottom:20px;">
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       <div class="col-md-3">
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        <img src="https://static.igem.org/mediawiki/2016/4/4f/T--BostonU_HW--MINTlogo_rcwolf.png" width="90%" style="margin:auto;">
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      </div>
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      <div class="col-md-6">
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        A microfluidic description language generated as an output of MuShroom mapper and used as an input to Fluigi. This language is used to describe the features of the specified microfluidic device in great detail including specification of feature shape, size and spacing.
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      </div>
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      <div class="col-md-3">
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      </div>
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     </div>
 
     </div>
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    <br><br><br><br>
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    <br>
 
  
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<div class="row" style="padding-top:50px; padding-bottom:50px;">
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      <div class="col-md-3">
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  <div class="col-md-1"></div>
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      </div>
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  <div class="col-md-10" style="font-size: 3em; line-height: 130%;"><b style="color: #355E62;">TIMELINE | </b>Building the Neptune Flow</div>
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      <div class="col-md-9">
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−
        <div style="font-size: 2em">3DuF | Joshua Lippai</div>
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−
      </div>
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    </div>
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    <div class="row" style="padding-top:20px; padding-bottom:20px;">
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      <div class="col-md-3">
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        <img src="https://static.igem.org/mediawiki/2016/7/7c/T--BostonU_HW--3DuFlogo_rcwolf.png" width="90%" style="margin:auto;">
+
−
      </div>
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−
      <div class="col-md-6">
+
−
       
+
−
        A CAD-like drawing web application. 3DuF can be used to manually draw a microfluidic design if the user wishes to bypass high-level specifications. 3DuF will then output SVG files (for CNC milling layers of the microfluidic chip) and a JSON file for later visualization and editing purposes. When used in the context of Neptune, 3DuF is leveraged to visualize the JSON output of Fluigi so that the user may control his or her microfluidic device intuitively through the Neptune interface.
+
−
      </div>
+
−
      <div class="col-md-3">
+
−
        <img src="https://static.igem.org/mediawiki/2016/b/b1/JoshSquare_rcwolf.png" width="100%" height="100%" style="border-radius: 50%;" >
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      </div>
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      <div class="col-md-9">
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        <div style="font-size: 2em">MakerFluidics | Ryan Silva</div>
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−
      </div>
+
−
    </div>
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    <div class="row" style="padding-top:20px; padding-bottom:20px;">
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        <img src="https://static.igem.org/mediawiki/2016/8/8e/T--BostonU_HW--MakerFluidicsLogo_rcwolf.png" width="80%" style="margin:auto;">
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−
      </div>
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      <div class="col-md-6">
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        MakerFluidics Description
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      </div>
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      <div class="col-md-3"></div>
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      <div class="col-md-3"></div>
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      <div class="col-md-9">
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        <div style="font-size: 2em">Microfluidic Application | Ali Lashkaripour</div>
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−
      </div>
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−
    </div>
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    <div class="row" style="padding-top:20px; padding-bottom:20px;">
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      <div class="col-md-3"></div>
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      <div class="col-md-6">
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        Microfluidic applications description
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      </div>
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      <div class="col-md-3"></div>
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    </div>
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<div class="row" style="padding-top:20px; padding-bottom:20px;">
 +
<!-- About Section -->
 +
    <section id="about">
 +
        <div class="container">
 +
            <br><br/>
 +
            <div class="row">
 +
                <div class="col-lg-12">
 +
                    <ul class="timeline">
 +
                        <li>
 +
                            <div class="timeline-image">
 +
                                <img class="img-circle img-responsive" src="https://static.igem.org/mediawiki/2016/c/cd/ChalkboardSquare.jpg" alt="">
 +
                            </div>
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                            <div class="timeline-panel">
 +
                                <div class="timeline-heading">
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                                    <h4 >16 - 30 May 2016</h4>
 +
                                    <h4 class="subheading">Training and Orientation</h4>
 +
                                </div>
 +
                                <div class="timeline-body">
 +
                                    <p class="text-muted">Our project is part of an existing workflow in our lab, and during training and orientation we learned about the flow and how we fit in. We also started to test tools that we could use to build our graphical user interface and planned out what we could do with the hardware setup. </p>
 +
                                    <br>
 +
                                    <a href="https://2016.igem.org/Team:BostonU_HW/Notebook/May"> <button type="button" class="btn btn-primary">See More</button></a>
 +
                                </div>
 +
                            </div>
 +
                        </li>
 +
                        <li class="timeline-inverted">
 +
                            <div class="timeline-image">
 +
                                <img class="img-circle img-responsive" src="https://static.igem.org/mediawiki/2016/9/9e/T--BostonU_HW--TimelineJune_rcwolf.png" alt="">
 +
                            </div>
 +
                            <div class="timeline-panel">
 +
                                <div class="timeline-heading">
 +
                                    <h4>June 2016</h4>
 +
                                    <h4 class="subheading">A GUI is Born</h4>
 +
                                </div>
 +
                                <div class="timeline-body">
 +
                                    <p class="text-muted">After testing out tools, we decided to implement a web application using a node.js (operating as a local server) framework. We started ordering parts and 3D printing components to set up the hardware. </p>
 +
                                    <br>
 +
                                    <a href="https://2016.igem.org/Team:BostonU_HW/Notebook/June"> <button type="button" class="btn btn-primary">See More</button></a>
 +
                                </div>
 +
                            </div>
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                        </li>
 +
                        <li>
 +
                            <div class="timeline-image">
 +
                                <img class="img-circle img-responsive" src="https://static.igem.org/mediawiki/2016/3/3b/T--BostonU_HW--TimelineJuly_rcwolf.png" alt="">
 +
                            </div>
 +
                            <div class="timeline-panel">
 +
                                <div class="timeline-heading">
 +
                                    <h4>July 2016</h4>
 +
                                    <h4 class="subheading">Expanding Horizons</h4>
 +
                                </div>
 +
                                <div class="timeline-body">
 +
                                    <p class="text-muted">We started building Neptune piece by piece. From what was initially a GUI designed only to interact with hardware, the idea of Neptune as a full-fledged toolchain arose.</p>
 +
                                    <br>
 +
                                    <a href="https://2016.igem.org/Team:BostonU_HW/Notebook/July"> <button type="button" class="btn btn-primary">See More</button></a>
 +
                                </div>
 +
                            </div>
 +
                        </li>
 +
                        <li class="timeline-inverted">
 +
                            <div class="timeline-image">
 +
                                <img class="img-circle img-responsive" src="https://static.igem.org/mediawiki/2016/f/f8/T--BostonU_HW--TimelineAug_rcwolf.png" alt="">
 +
                            </div>
 +
                            <div class="timeline-panel">
 +
                                <div class="timeline-heading">
 +
                                    <h4>August 2016</h4>
 +
                                    <h4 class="subheading">In the Trenches</h4>
 +
                                </div>
 +
                                <div class="timeline-body">
 +
                                    <p class="text-muted">We carved out the major components that make up Neptune today. The Specify, Design, Build, Assemble, and Control pages were built with the end functional goal of each component clearly laid out. Many iterations of control infrastructure prototypes were made and firmware was solidified.</p>
 +
                                    <br>
 +
                                    <a href="https://2016.igem.org/Team:BostonU_HW/Notebook/August"> <button type="button" class="btn btn-primary">See More</button></a> 
 +
                                </div>
 +
                            </div>
 +
                        <li>
 +
                            <div class="timeline-image">
 +
                                <img class="img-circle img-responsive" src="https://static.igem.org/mediawiki/2016/3/3a/T--BostonU_HW--TimelineSept_rcwolf.png" alt="">
 +
                            </div>
 +
                            <div class="timeline-panel">
 +
                                <div class="timeline-heading">
 +
                                    <h4>September 2016</h4>
 +
                                    <h4 class="subheading">End-to-end Integration</h4>
 +
                                </div>
 +
                                <div class="timeline-body">
 +
                                    <p class="text-muted">Full integration of Neptune software and hardware was made. Neptune software was stress-tested by benchmarks and levels of hardware precision were evaluated and documented.</p>
 +
                                    <br>
 +
                                    <a href="https://2016.igem.org/Team:BostonU_HW/Notebook/September"> <button type="button" class="btn btn-primary">See More</button></a>
 +
                                </div>
 +
                            </div>
 +
                        </li>
 +
                        <li class="timeline-inverted">
 +
                            <div class="timeline-image">
 +
                                <img class="img-circle img-responsive" src="https://static.igem.org/mediawiki/2016/1/1e/T--BostonU_HW--GitHubLogo_rcwolf.png" alt="">
 +
                            </div>
 +
                            <div class="timeline-panel">
 +
                                <div class="timeline-heading">
 +
                                    <h4 >October 2016</h4>
 +
                                    <h4 class="subheading">Release</h4>
 +
                                </div>
 +
                                <div class="timeline-body">
 +
                                    <p class="text-muted">Programming time dedicated to bug-fixing. We validated our work through multiple test cases including a collaboration with the MIT wetlab team. We released our software and hardware as open source on GitHub and NONA.</p>
 +
                                    <br>
 +
                                    <a href="https://2016.igem.org/Team:BostonU_HW/Notebook/October"> <button type="button" class="btn btn-primary">See More</button></a>
 +
                                </div>
 +
                            </div>
 +
                        </li>
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Latest revision as of 06:30, 19 October 2016


TIMELINE





TIMELINE | Building the Neptune Flow


  • 16 - 30 May 2016

    Training and Orientation

    Our project is part of an existing workflow in our lab, and during training and orientation we learned about the flow and how we fit in. We also started to test tools that we could use to build our graphical user interface and planned out what we could do with the hardware setup.


  • June 2016

    A GUI is Born

    After testing out tools, we decided to implement a web application using a node.js (operating as a local server) framework. We started ordering parts and 3D printing components to set up the hardware.


  • July 2016

    Expanding Horizons

    We started building Neptune piece by piece. From what was initially a GUI designed only to interact with hardware, the idea of Neptune as a full-fledged toolchain arose.


  • August 2016

    In the Trenches

    We carved out the major components that make up Neptune today. The Specify, Design, Build, Assemble, and Control pages were built with the end functional goal of each component clearly laid out. Many iterations of control infrastructure prototypes were made and firmware was solidified.


  • September 2016

    End-to-end Integration

    Full integration of Neptune software and hardware was made. Neptune software was stress-tested by benchmarks and levels of hardware precision were evaluated and documented.


  • October 2016

    Release

    Programming time dedicated to bug-fixing. We validated our work through multiple test cases including a collaboration with the MIT wetlab team. We released our software and hardware as open source on GitHub and NONA.