Difference between revisions of "Team:Duesseldorf/Parts"

(Prototype team page)
 
 
(44 intermediate revisions by 3 users not shown)
Line 1: Line 1:
{{Duesseldorf}}
+
{{Template:Duesseldorf/CSS2}}
 
<html>
 
<html>
 
+
  <head>
 
+
      <link href="https://fonts.googleapis.com/css?family=Roboto" rel="stylesheet">
 
+
  </head>
 
+
  <body>
 
+
      <div class="content">
 
+
        <div class="nav">
<div class="column full_size">
+
            <table style="margin: 0; border: none; width: 100%;">
 
+
              <tr style="border:none;">
 
+
                  <td style="border:none; padding: 0 20px 0 20px;"> <a href="https://2016.igem.org/Team:Duesseldorf"><img src="https://static.igem.org/mediawiki/2016/f/f3/T--Duesseldorf--logo-white.svg"></a></td>
<p>Each team will make new parts during iGEM and will submit them to the Registry of Standard Biological Parts. The iGEM software provides an easy way to present the parts your team has created. The <code>&lt;groupparts&gt;</code> tag (see below) will generate a table with all of the parts that your team adds to your team sandbox.</p>
+
              </tr>
<p>Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without needing to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.</p>
+
              <tr style="border:none;">
 
+
                  <td style="border:none;">
 
+
                    <ul>
 +
                        <li><a href="https://2016.igem.org/Team:Duesseldorf">Home</a></li>
 +
                        <li class="dropdown">
 +
                          <a href="#" >Project</a>
 +
                          <div class="dropdown-content">
 +
                              <ul>
 +
                                <li><a href="https://2016.igem.org/Team:Duesseldorf/Description">Description</a></li>
 +
                                <li><a href="https://2016.igem.org/Team:Duesseldorf/Proof">Results</a></li>
 +
                                <li><a href="https://2016.igem.org/Team:Duesseldorf/Demonstrate">Demonstrate</a></li>
 +
                                <li><a href="https://2016.igem.org/Team:Duesseldorf/Future_Applications">Future Applications</a></li>
 +
                              </ul>
 +
                          </div>
 +
                        </li>
 +
                        <li><a href="https://2016.igem.org/Team:Duesseldorf/Collaborations">Collaborations</a></li>
 +
                        <li class="dropdown">
 +
                          <a href="#">Outreach</a>
 +
                          <div class="dropdown-content">
 +
                              <ul>
 +
                                <li><a href="https://2016.igem.org/Team:Duesseldorf/Outreach">Outreach</a></li>
 +
                                <li><a href="https://2016.igem.org/Team:Duesseldorf/Outreach#HP">Education</a></li>
 +
                                <li><a href="https://2016.igem.org/Team:Duesseldorf/Outreach#IHP">Integrated Practices</a></li>
 +
                              </ul>
 +
                          </div>
 +
                        </li>
 +
                        <li><a href="https://2016.igem.org/Team:Duesseldorf/Hardware">Hardware</a></li>
 +
                        <li><a href="https://2016.igem.org/Team:Duesseldorf/Attributions">Attributions</a></li>
 +
                        <li><a href="https://2016.igem.org/Team:Duesseldorf/Safety">Safety</a></li>
 +
                        <li><a href="https://2016.igem.org/Team:Duesseldorf/Team">Team</a></li>
 +
                        <li><a style="color: white;" href="https://2016.igem.org/Team:Duesseldorf/Parts">Parts</a></li>
 +
                        <li><a href="https://2016.igem.org/Team:Duesseldorf/Experiments">Experiments</a></li>
 +
                    </ul>
 +
                  </td>
 +
              </tr>
 +
              <tr style="border:none;">
 +
                  <td style="border:none;">
 +
                    <!------- Social Icons by https://www.iconfinder.com/icons/1546110/brand_logo_social_social_network_twitter_website_icon_icon#size=128 --->
 +
                    <a href="http://facebook.com/igemhhu" style="margin:0;padding:0;">
 +
                        <?xml version="1.0" ?><!DOCTYPE svg  PUBLIC '-//W3C//DTD SVG 1.1//EN'  'http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd'>
 +
                        <svg id="Layer_1" class="social"  style="width:10%; margin-top:10px;enable-background:new 0 0 76 76;" version="1.1" viewBox="0 0 76 76" xml:space="preserve" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
 +
                          <style type="text/css">
 +
                              .st0{fill:#333333;}
 +
                              .st1{fill:#333333;}
 +
                              .st2{fill:#333333;}
 +
                          </style>
 +
                          <g>
 +
                              <path class="st0" d="M65,1H11C5.5,1,1,5.5,1,11V65c0,5.5,4.5,10,10,10h26.7l0-26.4h-6.9c-0.9,0-1.6-0.7-1.6-1.6l0-8.5  c0-0.9,0.7-1.6,1.6-1.6h6.9v-8.2c0-9.6,5.8-14.8,14.4-14.8h7c0.9,0,1.6,0.7,1.6,1.6v7.2c0,0.9-0.7,1.6-1.6,1.6l-4.3,0  c-4.6,0-5.5,2.2-5.5,5.4v7.1h10.2c1,0,1.7,0.8,1.6,1.8l-1,8.5c-0.1,0.8-0.8,1.4-1.6,1.4h-9.1l0,26.4H65c5.5,0,10-4.5,10-10V11  C75,5.5,70.5,1,65,1z"/>
 +
                          </g>
 +
                        </svg>
 +
                    </a>
 +
                    <a href="https://twitter.com/igemhhu16" style="margin:0;padding:0;">
 +
                        <?xml version="1.0" ?><!DOCTYPE svg  PUBLIC '-//W3C//DTD SVG 1.1//EN'  'http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd'>
 +
                        <svg id="Layer_1" class="social"  style="width:10%; margin-top:10px;enable-background:new 0 0 76 76;" version="1.1" viewBox="0 0 76 76" xml:space="preserve" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
 +
                          <style type="text/css">
 +
                              .st0{fill:#333333;}
 +
                              .st1{fill:#333333;}
 +
                              .st2{fill:#333333;}
 +
                          </style>
 +
                          <g>
 +
                              <path class="st0" d="M73.8,14.4c-1.6,0.7-3.4,1.3-5.1,1.7c1.9-1.8,3.4-4.1,4.2-6.7l0,0c0.2-0.7-0.6-1.4-1.2-1l0,0  c-2.4,1.4-5.1,2.5-7.8,3.2c-0.2,0-0.3,0.1-0.5,0.1c-0.5,0-1-0.2-1.4-0.5c-2.9-2.6-6.7-4-10.6-4c-1.7,0-3.4,0.3-5.1,0.8  c-5.2,1.6-9.2,5.9-10.4,11.1c-0.5,2-0.6,4-0.4,5.9c0,0.2-0.1,0.4-0.1,0.4c-0.1,0.1-0.3,0.2-0.4,0.2c0,0,0,0-0.1,0  c-11.3-1.1-21.5-6.5-28.8-15.4l0,0c-0.4-0.5-1.1-0.4-1.4,0.1l0,0c-1.4,2.4-2.2,5.2-2.2,8c0,4.3,1.7,8.4,4.8,11.4  C6.2,29.5,5,29,3.8,28.4l0,0c-0.6-0.3-1.2,0.1-1.2,0.7l0,0c-0.1,6.4,3.7,12.1,9.3,14.7c-0.1,0-0.2,0-0.3,0c-0.9,0-1.8-0.1-2.7-0.3  l0,0c-0.6-0.1-1.1,0.5-1,1.1l0,0c1.8,5.7,6.7,9.9,12.6,10.9c-4.9,3.3-10.6,5-16.5,5l-1.8,0c-0.6,0-1,0.4-1.2,0.9  c-0.1,0.5,0.1,1.1,0.6,1.4c6.7,3.9,14.3,5.9,22,5.9c6.8,0,13.1-1.3,18.8-4c5.2-2.4,9.9-5.9,13.8-10.3c3.6-4.1,6.5-8.9,8.4-14.1  c1.9-5,2.9-10.3,2.9-15.4v-0.2c0-0.8,0.4-1.6,1-2.1c2.5-2,4.6-4.3,6.3-7l0,0C75.3,14.9,74.6,14,73.8,14.4L73.8,14.4z"/>
 +
                          </g>
 +
                        </svg>
 +
                    </a>
 +
                    <a href="https://www3.hhu.de/igem/" style="margin:0;padding:0;">
 +
                        <?xml version="1.0" ?><!DOCTYPE svg  PUBLIC '-//W3C//DTD SVG 1.1//EN'  'http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd'>
 +
                        <svg id="Layer_1" class="social"  style="width:10%; margin-top:10px;enable-background:new 0 0 76 76;" version="1.1" viewBox="0 0 76 76" xml:space="preserve" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
 +
                          <style type="text/css">
 +
                              .st0{fill:#333333;}
 +
                              .st1{fill:#333333;}
 +
                              .st2{fill:#333333;}
 +
                          </style>
 +
                          <g>
 +
                              <g>
 +
                                <path class="st0" d="M23.2,23.8h-4.1l11.1,31.5l6.2-17.8l-4.8-13.7h-4.3v-3h19.1v3H42l11.1,31.5l4-11.4    c5.3-14.7-4.3-19.2-4.3-22.5s2.7-5.9,5.9-5.9c0.2,0,0.3,0,0.5,0C53.7,10.3,46.2,7,38,7c-10.7,0-20.2,5.5-25.8,13.8h11L23.2,23.8    L23.2,23.8z"/>
 +
                                <path class="st0" d="M7,38c0,11.9,6.7,22.1,16.4,27.4l-14-39.5C7.9,29.6,7,33.7,7,38z"/>
 +
                                <path class="st0" d="M64.9,22.7c0.4,2.6,0.3,5.5-0.4,8.5h0.1l-0.5,1.3l0,0c-0.3,1-0.6,2-1,2.9L52.6,65.3C62.3,60.1,69,49.8,69,38    C69,32.5,67.5,27.2,64.9,22.7z"/>
 +
                                <path class="st0" d="M28.5,67.5c3,1,6.2,1.5,9.5,1.5c3.2,0,6.2-0.5,9.1-1.4L38.1,42L28.5,67.5z"/>
 +
                                <path class="st0" d="M64.2,11.8C57.2,4.8,47.9,1,38,1S18.8,4.8,11.8,11.8S1,28.1,1,38c0,9.9,3.8,19.2,10.8,26.2S28.1,75,38,75    s19.2-3.8,26.2-10.8c7-7,10.8-16.3,10.8-26.2C75,28.1,71.2,18.8,64.2,11.8z M38,72.4C19,72.4,3.6,57,3.6,38S19,3.6,38,3.6    S72.4,19,72.4,38S57,72.4,38,72.4z"/>
 +
                              </g>
 +
                          </g>
 +
                        </svg>
 +
                    </a>
 +
                    <a href="https://www.youtube.com/channel/UCg7deDCwE8bCcPsF8ELnaxw" style="margin:0;padding:0;">
 +
                        <?xml version="1.0" ?><!DOCTYPE svg  PUBLIC '-//W3C//DTD SVG 1.1//EN'  'http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd'>
 +
                        <svg id="Layer_1" class="social"  style="width:10%; margin-top:10px;enable-background:new 0 0 76 76;" version="1.1" viewBox="0 0 76 76" xml:space="preserve" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
 +
                          <style type="text/css">
 +
                              .st0{fill:#666666;}
 +
                              .st1{fill:#666666;}
 +
                              .st2{fill:#666666;}
 +
                          </style>
 +
                          <g>
 +
                              <g>
 +
                                <path class="st0" d="M59.6,11.8H16.4C7.9,11.8,1,18.7,1,27.2v21.6c0,8.5,6.9,15.4,15.4,15.4h43.3c8.5,0,15.4-6.9,15.4-15.4V27.2    C75,18.7,68.1,11.8,59.6,11.8z M49.2,39.1L29,48.7c-0.5,0.3-1.2-0.1-1.2-0.7V28.1c0-0.6,0.6-1,1.2-0.7l20.2,10.3    C49.9,37.9,49.8,38.8,49.2,39.1z"/>
 +
                              </g>
 +
                          </g>
 +
                        </svg>
 +
                    </a>
 +
                    <a href="mailto:igem@hhu.de><?xml version="1.0" ?><!DOCTYPE svg  PUBLIC '-//W3C//DTD SVG 1.1//EN'  'http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd'><svg  id="Layer_1" version="1.1" viewBox="0 0 512 512"  class="social"  style="width:10%; margin-top:10px;enable-background:new 0 0 76 76;" xml:space="preserve" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
 +
                        <path class="st0" d="M484.748,96.359H27.439h-3.966h-9.625h-6.63v318.585H505V96.359h-17.218H484.748z M464.837,116.271  L272.529,308.578c-8.769,8.769-24.073,8.769-32.842,0L47.35,116.271H464.837z M27.128,124.203l129.287,129.268L27.128,382.759  V124.203z M43.014,395.029l127.489-127.47l55.106,55.097c8.138,8.148,18.978,12.64,30.499,12.64c11.521,0,22.361-4.492,30.499-12.64  l55.106-55.106l127.479,127.479H43.014z M485.089,382.769L355.801,253.472l129.287-129.297V382.769z" fill="#333333"/>
 +
                        </svg>
 +
                    </a>
 +
                    <br>
 +
                    Heinrich-Heine University <br />
 +
                    Universitätsstraße 1 <br />
 +
                    40225 Düsseldorf <br />
 +
                    Design by Marvin van Aalst <br>
 +
                  </td>
 +
              </tr>
 +
            </table>
 +
        </div>
 +
        <div class="page">
 +
            <div class="paper">
 +
              <div id="Navigation" class="navigation">
 +
                  <ul class="topnav">
 +
                    <li><a href="https://2016.igem.org/Team:Duesseldorf">Home</a></li>
 +
                    <li><a href="https://2016.igem.org/Team:Duesseldorf/Description">Description</a></li>
 +
                    <li><a href="https://2016.igem.org/Team:Duesseldorf/Proof">Results</a></li>
 +
                    <li><a href="https://2016.igem.org/Team:Duesseldorf/Demonstrate">Demonstrate</a></li>
 +
                    <li><a href="https://2016.igem.org/Team:Duesseldorf/Future_Applications">Future Applications</a></li>
 +
                    <li><a href="https://2016.igem.org/Team:Duesseldorf/Collaborations">Collaborations</a></li>
 +
                    <li><a href="https://2016.igem.org/Team:Duesseldorf/Outreach">Outreach</a></li>
 +
                    <li><a href="https://2016.igem.org/Team:Duesseldorf/Outreach#HP">Education</a></li>
 +
                    <li><a href="https://2016.igem.org/Team:Duesseldorf/Outreach#IHP">Integrated Practices</a></li>
 +
                    <li><a href="https://2016.igem.org/Team:Duesseldorf/Hardware">Hardware</a></li>
 +
                    <li><a href="https://2016.igem.org/Team:Duesseldorf/Attributions">Attributions</a></li>
 +
                    <li><a  href="https://2016.igem.org/Team:Duesseldorf/Safety">Safety</a></li>
 +
                    <li><a href="https://2016.igem.org/Team:Duesseldorf/Team">Team</a></li>
 +
                    <li><a style="color: black;" href="https://2016.igem.org/Team:Duesseldorf/Parts">Parts</a></li>
 +
                    <li><a href="https://2016.igem.org/Team:Duesseldorf/Experiments">Experiments</a></li>
 +
                  </ul>
 +
              </div>
 +
<!----------------------------------------- ARTICLE -------------------------------------->
 +
      <div class="article">
 +
<div class="attention"> <h1 style="color: white;">Parts</h1>
 +
<p style="color:white;">BioBricks submitted to the iGEM registry</p>
 
</div>
 
</div>
 +
</div>
  
 +
The table below shows all BioBricks we distributed to the iGEM Parts registry. By ordering our parts you can reconstruct our circuit or use them to create your own genetically engineered machine.
 +
<br><br>
 +
For more information about usage and design check out the registry web pages by clicking on the BioBrick name or take a look into our <a href=”https://2016.igem.org/Team:Duesseldorf/Experiments”>Lab book</a>. If you want to use our parts and need further assistance feel free to contact us: <a href="mailto:igem@hhu.de?Subject=BioBrick request" target="_top">igem@hhu.de</a>
 +
<img width="125"src="https://static.igem.org/mediawiki/2016/f/ff/T--duesseldorf--biobrickBild.png">
  
 +
<br>
 +
<br>
 +
<br>
  
 
+
<table>
 
+
<tr bgcolor="D1E9E2">
<div class="column half_size">
+
    <td><b>BioBrick</td>
<div class="highlight">
+
    <td><b>Name</td>
<h5>Note</h5>
+
    <td><b>Short Description</td>
<p>Note that parts must be documented on the <a href="http://parts.igem.org/Main_Page"> Registry</a>. This page serves to <i>showcase</i> the parts you have made. Future teams and other users and are much more likely to find parts by looking in the Registry than by looking at your team wiki.</p>
+
</tr>
 +
<tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K1936000">BBa_K1936000</a></td>
 +
    <td>ePDZ-mCherry-BAX184E</td>
 +
    <td>Apoptosis inducing protein that can be recruited to the outer mitochondrial membrane by using LOV2 outer mitochondrial membrane anchor.</td>
 +
</tr>
 +
<tr bgcolor="F5FFFC">
 +
    <td><a href="http://parts.igem.org/Part:BBa_K1936001">BBa_K1936001</a></td>
 +
    <td>Tom5-eGFP-LOV2</td>
 +
    <td>Outer mitochondrial membrane anchor which recruits ePDZ fusion protein under exposure to blue light.</td>
 +
</tr>
 +
<tr>
 +
    <td><a href="http://parts.igem.org/Part:BBa_K1936002">BBa_K1936002</a></td>
 +
    <td>TetR-PIF6</td>
 +
    <td>Interacting factor of Phytochrome B fused to tetR what allows DNA binding at the tetO motif upstream of a promoter.</td>
 +
</tr>
 +
<tr bgcolor="F5FFFC">
 +
    <td><a href="http://parts.igem.org/Part:BBa_K1936003">BBa_K1936003</a></td>
 +
    <td>PhyB-VP16</td>
 +
    <td>Transactivator complex that can be recruited to the DNA in combination with TetR- PIF6 under exposure of red light.</td>
 +
</tr>
 +
</table>
 +
<br>
 +
<img width="75"src="https://static.igem.org/mediawiki/2016/thumb/1/18/T--duesseldorf--medal-special1.png/210px-T--duesseldorf--medal-special1.png"> We also nominated <a href="http://parts.igem.org/Part:BBa_K1936001">BBa_K1936001</a> as our <a href="https://2016.igem.org/Team:Duesseldorf/Best_Part">New Best Basic Part!</a>
 
</div>
 
</div>
 +
    </div>
 +
  </div>
 
</div>
 
</div>
 
+
</body>
 
+
 
+
 
+
<div class="column half_size">
+
 
+
<h5>Adding parts to the registry</h5>
+
<p>You can add parts to the Registry at our <a href="http://parts.igem.org/Add_a_Part_to_the_Registry">Add a Part to the Registry</a> link.</p>
+
<p>We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better you will remember all the details about your parts. Remember, you don't need to send us the DNA sample before you create an entry for a part on the Registry. (However, you <b>do</b> need to send us the DNA sample before the Jamboree. If you don't send us a DNA sample of a part, that part will not be eligible for awards and medal criteria.)</p>
+
</div>
+
 
+
 
+
 
+
 
+
 
+
<div class="column half_size">
+
 
+
<h5>What information do I need to start putting my parts on the Registry?</h5>
+
<p>The information needed to initially create a part on the Registry is:</p>
+
<ul>
+
<li>Part Name</li>
+
<li>Part type</li>
+
<li>Creator</li>
+
<li>Sequence</li>
+
<li>Short Description (60 characters on what the DNA does)</li>
+
<li>Long Description (Longer description of what the DNA does)</li>
+
<li>Design considerations</li>
+
</ul>
+
 
+
<p>
+
We encourage you to put up <em>much more</em> information as you gather it over the summer. If you have images, plots, characterization data and other information, please also put it up on the part page. </p>
+
 
+
</div>
+
 
+
 
+
<div class="column half_size">
+
 
+
<h5>Inspiration</h5>
+
<p>We have a created  a <a href="http://parts.igem.org/Well_Documented_Parts">collection of well documented parts</a> that can help you get started.</p>
+
 
+
<p> You can also take a look at how other teams have documented their parts in their wiki:</p>
+
<ul>
+
<li><a href="https://2014.igem.org/Team:MIT/Parts"> 2014 MIT </a></li>
+
<li><a href="https://2014.igem.org/Team:Heidelberg/Parts"> 2014 Heidelberg</a></li>
+
<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Parts">2014 Tokyo Tech</a></li>
+
</ul>
+
</div>
+
 
+
<div class="column full_size">
+
<h5>Part Table </h5>
+
<div class="highlight">
+
 
+
 
+
</html>
+
<groupparts>iGEM2016 Example</groupparts>
+
<html>
+
</div>
+
</div>
+
 
+
 
+
 
+
 
+
</html>
+

Latest revision as of 22:50, 19 October 2016

Parts

BioBricks submitted to the iGEM registry

The table below shows all BioBricks we distributed to the iGEM Parts registry. By ordering our parts you can reconstruct our circuit or use them to create your own genetically engineered machine.

For more information about usage and design check out the registry web pages by clicking on the BioBrick name or take a look into our Lab book. If you want to use our parts and need further assistance feel free to contact us: igem@hhu.de


BioBrick Name Short Description
BBa_K1936000 ePDZ-mCherry-BAX184E Apoptosis inducing protein that can be recruited to the outer mitochondrial membrane by using LOV2 outer mitochondrial membrane anchor.
BBa_K1936001 Tom5-eGFP-LOV2 Outer mitochondrial membrane anchor which recruits ePDZ fusion protein under exposure to blue light.
BBa_K1936002 TetR-PIF6 Interacting factor of Phytochrome B fused to tetR what allows DNA binding at the tetO motif upstream of a promoter.
BBa_K1936003 PhyB-VP16 Transactivator complex that can be recruited to the DNA in combination with TetR- PIF6 under exposure of red light.

We also nominated BBa_K1936001 as our New Best Basic Part!