Difference between revisions of "Team:UC Davis/Proof"

 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
{{UC_Davis}}
 
{{UC_Davis}}
 
<html>
 
<html>
<head></head>
+
<head>
 +
 +
</head>
 
<body>
 
<body>
 
   
 
 
    <div class="container-fluid">
 
    <div class="container-fluid">
 
<div class="row row-centered body_odd">
 
<div class="row row-centered body_odd">
<div class="col-centered col-xs-10 ">
+
<div class="col-centered col-xs-10 rounded ">
<h1>Novel Expression</h1>
+
    <h1>Our Project</h1>
<p>As a result of our search for homologs to blue GAF proteins, our team selected 13 GAF domain to transform into E.coli. We were able to successfully transform 4 of them, 3 of which were blue and 1 red. </p>
+
      <p style = "text-align:justify;">Color is innate in food perception and consumers expect vivid colors -- beyond those already present in food. Due to backlash against artificial colorants, some large food companies have pledged to exclusively use natural food colorings, which may result in the disappearance of some brightly colored food (1). This is a complex transition as there are limited natural options for food pigment and the regulatory framework is evolving. </p>
</div>
+
<h2>In this project we demonstrate that the GAF domain of cyanobacteriochrome (CBCR) proteins are a viable natural alternative to artificial food dyes.</h2>
 +
 
 +
 +
<div class="col-xs-3 col-centered projLinks">
 +
<a href="https://2016.igem.org/Team:UC_Davis/Discovery" class="navBtn"> Protein <br>Discovery</a>
 +
</div>
 +
<div class="col-xs-3 col-centered projLinks">
 +
<a href="https://2016.igem.org/Team:UC_Davis/Novel" class="navBtn"> Novel GAF <br>Expression</a>
 +
</div>
 +
<div class="col-xs-3 col-centered projLinks">
 +
<a href="https://2016.igem.org/Team:UC_Davis/Optimization" class="navBtn">Production Optimization</a>
 +
</div>
 +
<div class="col-xs-3 col-centered projLinks">
 +
<a href="https://2016.igem.org/Team:UC_Davis/GRAS" class="navBtn"> Expression in a GRAS Organism</a>
 +
</div>
 +
</div>
 
</div>
 
</div>
 
</div>
 
</div>
 +
<br>
 
<div class="container">
 
<div class="container">
 
<div class="row row-centered">
 
<div class="row row-centered">
<div class="col-centered col-xs-12">
+
<div class="col-xs-12 col-centered projP">
<h3>Motivation</h3>
+
<h3>Results</h3>
<p>A main focus of our project was to engineer a replacement for the dye Blue #1. While there are some known GAF proteins which absorb only 10 nm away from Blue #1, this actually represents large visual differences in color (25). For example, the difference in color from Spirulina to Blue #1 is only 10nm, and that is clearly visible by eye (26). In an effort to match Blue #1’s peak spectra better, our team chose 13 blue GAF domain homologs in an effort to expand the known blue spectra of GAF domains, and ultimately get closer to ideal absorption of 630nm (8). </p>
+
<p>
<h3>Research</h3>
+
Ultimately we were able to model and express several colors from the GAF domains of metagenome mined CBCR's, optimize expression in <i>E.Coli</i>, lay the foundation for expression in <i>B. Subtilis</i>, and demonstrate that our proteins can fill a market demand.  
<p>After carefully selecting our 13 GAF proteins we began their transformation into E.coli. For easy induction, the DNA for the coding sequences were synthesized with a pBAD promoter (K206000) and strong RBS (B0034) so cultures can be induced with arabinose to produce the GAF protein, also known as the apoprotein.</p>
+
</p>
<p>Due to cloning difficulties, we resorted to using standard digestion/ligation methods to insert the protein-coding sequences into pSB1C3 sourced from J04450. Since untransformed plasmid colonies appear red, correctly transformed cells were screened by selecting white colonies. These were sequenced and co-transformed into DH5-alpha cells along with a plasmid containing the PCB pathway enzymes. The co-transformed cells were screened using a double-antibiotic plate, and a correctly co-transformed colony was used to innoculate 50ml TB cultures induced with arabinose. These cultures were harvested after overnight shaking for use in protein purification.</p>
+
<h3>Motivation</h3>  
<p>We were able to create the following succesfully expressed parts</p>
+
<img src="pictures/UCD16_iGEMlove.png" class="bactImg" alt="">
<table class = "table table-condensed table-bordered table-striped">
+
<p>Color is a powerful visual stimulus which strongly impacts our perception (30).Our project considers the strong correlation between the sensation of color and our perception of food. It is well established that humans use visual cues from color to identify and to judge the quality, texture, and taste of the food we eat. When a food&rsquo;s color is different than what we expect, our brain tells us that the food tastes different as well. Taste, smell, and sight all work in synchronization in the course of interpreting food; however, before we even smell or taste food we make judgements and predetermine taste and flavor based on the appearance of food. From birth to adulthood we associate certain colors with particular textures and flavors (31) We expect fresh fruits and vegetables to have certain colors when they are ripe, we anticipate colors like yellow to match banana flavors, orange to taste like pumpkin, we presume peanut butter will be brown and not blue, etc.</p>
<tbody>
+
<p>An early demonstration of the strong correlation between color and food perception was performed as early as 1970&rsquo;s by <em>Fast Food Nation</em>. In the study, subjects were presented with a meal consisting of steak and french fries in a room with special lighting. Under the special lighting, the meal appeared &lsquo;normal&rsquo; and consumers ranked the food with high marks on taste and quality. However, when the special lighting was turned off, it was revealed that the steak was dyed blue and the french fries were dyed green. Upon seeing the change, subjects lost their appetite and some became ill (31).</p>
<tr>
+
<p>Studies published in the <em>Journal of Food Science</em> state that consumers confused flavors of different beverages when the drinks did not have the taste that they expected based on the color of the drink. For example, when consumers were presented with a cherry drink manipulated to be green in color, consumers expected the drink to taste like lime. Also, when there was a mismatch between the flavor of the drink and their visual perception, their enjoyment of the beverage drastically declined (31).</p>
<td>
+
<p>Numerous studies, such as these, indicate that there is substantial correlation between color and food perception, a physiological effect which many food companies seek to use to their advantage (31). Companies invest substantial time, money, and resources to research the color of their products and calibrate food with specific colorimeters to quantitatively measure the colors of their foods according to USDA standards (2).</p>
<p>BBa_K1916000</p>
+
<p>Many large food companies regularly incorporate synthetic food dyes in their products in order to make their food more appealing for consumers. However, in recent years with developing uncertainty about the long-term safety of synthetic color additives, consumers have become increasingly circumspect about consuming synthetic (artificial) colors. This mounting pressure to rid food of synthetic dyes largely is due to consumer pressure after some studies suggested adverse human health effects resulting from consumption of such additives. In response to this growing pressure, large corporations such as Mars, Kraft, General Mills, and Nestle USA have promised to use exclusively natural food coloring within the next 5 years (3,4,5,6). MARS states that &ldquo;this is going to be a complex task and they will need to work to find new ingredients and formulas&rdquo; (3).</p>
</td>
+
<p>Unfortunately, the switch from synthetic dyes to natural dyes is not effortless. Natural dyes are not without flaws as many of the current natural dyes place strain on the environment and have poor sustainability. Many natural dye alternatives come from crops, like turmeric or carrots; such dyes require arable land and takes up valuable acreage which could be used to feed the quickly growing human population (7). Using thousands of hectares of land just to add color to our foods is arguably irresponsible.</p>
<td>
+
<p>Ideally our society needs a food colorant which can be mass produced, requires no arable land, has color properties similar to synthetic dyes, is sustainable, poses no foreseeable health implications, and has a wide pH and temperature stability range.</p>
<p>NpF2164g5</p>
+
<h3>Our Proposed Solution</h3>  
</td>
+
<p>In order to address the consumer concerns regarding synthetic dyes and to mitigate sustainability issues associated with natural dyes, we explored a new alternative to produce food pigmentation through proteins. Our project utilizes a highly versatile protein pigment from cyanobacteria in order to produce colored proteins capable of acting like a dye. Narrowly, our project goal was to engineer a replacement for the dye Blue #1. Blue #1, or Brilliant Blue, is a major current synthetic dye used extensively in the food industry. This dye is made from the aromatic hydrocarbons from petroleum which peaks at 630nm (8). We chose to attempt an alternative biological synthesis to this dye because blue colors are extremely difficult to replicate in beverages and food (17). Largely this is because natural blue colorants turn pink or violent in high acid food or beverages, like those produced from anthocyanins (17).</p>
<td>
+
<p>One promising alternative to the sustainability issues and lack of blue colorants is Spirulina produced dyes, which were approved by the FDA for use in food production (9). Spirulina color is isolated from the dried biomass of the cyanobacteria <em>Spirulina platensis </em>and is a potential source of blue color (10). Spirulina, however, lacks color vibrancy, temperature stability, and is pH sensitive (28). For these reasons, Spirulina coloring is not able to be used in cereal or beverage production (16) . Other blue natural dye alternatives like blueberries and red cabbage are poor candidates for use in food production since the color is very sensitive to pH and requires arable land (11). Accordingly, a novel solution for blue dye production is required, making it an ideal candidate for our summer research focus.</p>
<p><u><a href="http://parts.igem.org/Part:BBa_K1916000">http://parts.igem.org/Part:BBa_K1916000</a></u></p>
+
<p>Our work served as a proof-of-concept that cyanobacteria can be used to produce dyes. Our initial experimentation also suggests that cyanobacteria protein pigments can be adapted to produce other major colors beyond blue through further exploration and development.</p>
</td>
+
<p>We approached this project by thinking about four large technical considerations: protein discovery, novel GAF protein expression, production optimization, and expression in GRAS organism. However, the technical work is only a small part in the larger aim of our project to bring together science, industry regulation, and consumer acceptance.</p>
</tr>
+
<tr>
+
<td>
+
<p>BBa_K1916002</p>
+
</td>
+
<td>
+
<p>Cyan7427</p>
+
</td>
+
<td>
+
<p><u><a href="http://parts.igem.org/Part:BBa_K1916002">http://parts.igem.org/Part:BBa_K1916002</a></u></p>
+
</td>
+
</tr>
+
<tr>
+
<td>
+
<p>BBa_K1916004</p>
+
</td>
+
<td>
+
<p>Ga0100955_11928g3</p>
+
</td>
+
<td>
+
<p><u><a href="http://parts.igem.org/Part:BBa_K1916004">http://parts.igem.org/Part:BBa_K1916004</a></u></p>
+
</td>
+
</tr>
+
<tr>
+
<td>
+
<p>BBa_K1916018</p>
+
</td>
+
<td>
+
<p>CBCR8</p>
+
</td>
+
<td>
+
<p><u><a href="http://parts.igem.org/Part:BBa_K1916018">http://parts.igem.org/Part:BBa_K1916018</a></u></p>
+
</td>
+
</tr>
+
<tr>
+
<td>
+
<p>BBa_K1916100</p>
+
</td>
+
<td>
+
<p>pBAD+RBS+NpF</p>
+
</td>
+
<td>
+
<p><u><a href="http://parts.igem.org/Part:BBa_K1916100">http://parts.igem.org/Part:BBa_K1916100</a></u></p>
+
</td>
+
</tr>
+
<tr>
+
<td>
+
<p>BBa_K1916102</p>
+
</td>
+
<td>
+
<p>pBAD+RBS+Cyan</p>
+
</td>
+
<td>
+
<p><u><a href="http://parts.igem.org/Part:BBa_K1916102">http://parts.igem.org/Part:BBa_K1916102</a></u></p>
+
</td>
+
</tr>
+
<tr>
+
<td>
+
<p>BBa_K1916104</p>
+
</td>
+
<td>
+
<p>pBAD+RBS+G3</p>
+
</td>
+
<td>
+
<p><u><a href="http://parts.igem.org/Part:BBa_K1916104">http://parts.igem.org/Part:BBa_K1916104</a></u></p>
+
</td>
+
</tr>
+
<tr>
+
<td>
+
<p>BBa_K1916118</p>
+
</td>
+
<td>
+
<p>pBAD+RBS+CBCR8</p>
+
</td>
+
<td>
+
<p><u><a href="http://parts.igem.org/Part:BBa_K1916118">http://parts.igem.org/Part:BBa_K1916118</a></u></p>
+
</td>
+
</tr>
+
</tbody>
+
</table>
+
<p>After cell lysis by sonication, the proteins were further purified using the intein mediated purification with an affinity chitin-binding tag (21). This is a purification method utilizes the inducible self-cleaving inteins to separate the protein from the affinity tag without the use of the protease (21). This purification method was chosen because it allows complete removal of the intein tag from the protein, meaning no foreign DNA is remaining on the protein after purification. Our team felt this is an important step in relation to the labeling scheme our dye may undergo in which having even a piece of non-native DNA could mean dramatic differences. A more thorough discussion of the labeling possibilities can be found in the human practices tab.</p>
+
<p>Our team discovered the purification of these proteins ultimately had a noticeable effect on the final absorption spectra. The main difference being the purified protein has a much clearer and refine absorbance spectra and does not have other residues around the 400 nm range. However, one downside that is that the purification does lead to a loss in product, as evidenced by the reduction in peak height. This loss of product can ultimately be improved in the future more efficient eluting methods.</p>
+
<div class="centered"><img src="https://static.igem.org/mediawiki/2016/a/a2/T--UC_Davis--UCD16_novel1.png" alt=""></div>
+
<p>Below is the spectra of Blue #1 compared to our positive GAF control and a novel GAF protein. Our positive GAF control, labeled here as NpF2164g5, is a previoulsy characterized GAF protein, but is new  to iGEM and built into a new plasmid construct by our team. This acts as a positive control that our data is reproducible and supported by published peer reviewed literature. Similar to other findings for the absorbance of the native NpF2164g5 15Z (-), our data shows the max peak absorbance at 640nm, only 10nm away from Blue #1 (13). The novel GAF protein, labeled here as G3 is a untested GAF protein sequence donated to us by our collaborators in the Clark Lagarias laboratory which we determined to have a peak around 740nm. This means the protein appears green to the human eye. Unfortunately this new GAF proteins is substaintially farther away from Blue #1, it still adds a new data point to the GAF absorbance spectra and also helps validate our predictive model. This protein was correctly predicted to absorb at higher than 600nm by our predictive model. Unfortunately the spectra of the remaining four novel GAF proteins which are correctly transformed and sequence verified are not available; however, our team hopes to bring the spectra to the iGEM compeitition. </p>
+
<div class="centered"><img src="https://static.igem.org/mediawiki/2016/9/96/T--UC_Davis--UCD16_novelExp.png" height="400px" alt=""></div>
+
<h3 class = "inline">Future Directions</h3><img src="https://static.igem.org/mediawiki/2016/c/c4/T--UC_Davis--UCD16_future.png" class = "bactImg img-rounded" alt="">
+
<p>In the future, our team would like to work towards expanding the GAF domain spectra by both continuing the search for GAF homologs and also by mutations. By continuing the search for GAF homologs we feel the spectra can be significantly more filled; however, given that small changes in peak absorption visually have a significant difference in color, we also think forcing mutations in known GAF domains is the next step. Similar to mutations performed in Roger Y. Tsien’s lab to which established that green fluorescent protein (GFP) spectral characteristics could be dramatically changed by single point mutations, our team hypothesizes that this may be the case for GAF domains as well (22). This was the case when a single point mutation in a conserved cysteine within the GAF domain transformed the phytochrome to be fluorescent, meaning that it is possible that GAF proteins spectral characteristics could be altered by intentional mutations in protein sequences. (27) </p>
+
 
</div>
 
</div>
 
<div class="col-xs-6 col-centered projLinks">
 
<div class="col-xs-6 col-centered projLinks">
<a href="https://2016.igem.org/Team:UC_Davis/Optimization" class="navBtn">Next: Production Optimization</a>
+
<a href="https://2016.igem.org/Team:UC_Davis/Discovery" class="navBtn">Next: Protein Discovery</a>
</div>
+
</div>
 +
</div>
 
<br><hr>
 
<br><hr>
 
<div class="row row-centered footNotes">
 
<div class="row row-centered footNotes">
Line 171: Line 101:
  
 
</div>
 
</div>
</div>
 
 
</div>
 
</div>
 
</div>
 
</div>
Line 180: Line 109:
 
     <div class = "container-fluid footer">
 
     <div class = "container-fluid footer">
 
<div class="row row-centered">
 
<div class="row row-centered">
<div class="col-xs-8 col-centered centered">
+
<div class="col-xs-8 col-centered">
 
<p>Contact us at: ucdigem@gmail.com </p>
 
<p>Contact us at: ucdigem@gmail.com </p>
 
</div>
 
</div>
 
</div>
 
</div>
 
</div>
 
</div>
 +
 
</body>
 
</body>
 
</html>
 
</html>

Latest revision as of 01:53, 20 October 2016

Cyantific: UC Davis iGEM 2016

Our Project

Color is innate in food perception and consumers expect vivid colors -- beyond those already present in food. Due to backlash against artificial colorants, some large food companies have pledged to exclusively use natural food colorings, which may result in the disappearance of some brightly colored food (1). This is a complex transition as there are limited natural options for food pigment and the regulatory framework is evolving.

In this project we demonstrate that the GAF domain of cyanobacteriochrome (CBCR) proteins are a viable natural alternative to artificial food dyes.


Results

Ultimately we were able to model and express several colors from the GAF domains of metagenome mined CBCR's, optimize expression in E.Coli, lay the foundation for expression in B. Subtilis, and demonstrate that our proteins can fill a market demand.

Motivation

Color is a powerful visual stimulus which strongly impacts our perception (30).Our project considers the strong correlation between the sensation of color and our perception of food. It is well established that humans use visual cues from color to identify and to judge the quality, texture, and taste of the food we eat. When a food’s color is different than what we expect, our brain tells us that the food tastes different as well. Taste, smell, and sight all work in synchronization in the course of interpreting food; however, before we even smell or taste food we make judgements and predetermine taste and flavor based on the appearance of food. From birth to adulthood we associate certain colors with particular textures and flavors (31) We expect fresh fruits and vegetables to have certain colors when they are ripe, we anticipate colors like yellow to match banana flavors, orange to taste like pumpkin, we presume peanut butter will be brown and not blue, etc.

An early demonstration of the strong correlation between color and food perception was performed as early as 1970’s by Fast Food Nation. In the study, subjects were presented with a meal consisting of steak and french fries in a room with special lighting. Under the special lighting, the meal appeared ‘normal’ and consumers ranked the food with high marks on taste and quality. However, when the special lighting was turned off, it was revealed that the steak was dyed blue and the french fries were dyed green. Upon seeing the change, subjects lost their appetite and some became ill (31).

Studies published in the Journal of Food Science state that consumers confused flavors of different beverages when the drinks did not have the taste that they expected based on the color of the drink. For example, when consumers were presented with a cherry drink manipulated to be green in color, consumers expected the drink to taste like lime. Also, when there was a mismatch between the flavor of the drink and their visual perception, their enjoyment of the beverage drastically declined (31).

Numerous studies, such as these, indicate that there is substantial correlation between color and food perception, a physiological effect which many food companies seek to use to their advantage (31). Companies invest substantial time, money, and resources to research the color of their products and calibrate food with specific colorimeters to quantitatively measure the colors of their foods according to USDA standards (2).

Many large food companies regularly incorporate synthetic food dyes in their products in order to make their food more appealing for consumers. However, in recent years with developing uncertainty about the long-term safety of synthetic color additives, consumers have become increasingly circumspect about consuming synthetic (artificial) colors. This mounting pressure to rid food of synthetic dyes largely is due to consumer pressure after some studies suggested adverse human health effects resulting from consumption of such additives. In response to this growing pressure, large corporations such as Mars, Kraft, General Mills, and Nestle USA have promised to use exclusively natural food coloring within the next 5 years (3,4,5,6). MARS states that “this is going to be a complex task and they will need to work to find new ingredients and formulas” (3).

Unfortunately, the switch from synthetic dyes to natural dyes is not effortless. Natural dyes are not without flaws as many of the current natural dyes place strain on the environment and have poor sustainability. Many natural dye alternatives come from crops, like turmeric or carrots; such dyes require arable land and takes up valuable acreage which could be used to feed the quickly growing human population (7). Using thousands of hectares of land just to add color to our foods is arguably irresponsible.

Ideally our society needs a food colorant which can be mass produced, requires no arable land, has color properties similar to synthetic dyes, is sustainable, poses no foreseeable health implications, and has a wide pH and temperature stability range.

Our Proposed Solution

In order to address the consumer concerns regarding synthetic dyes and to mitigate sustainability issues associated with natural dyes, we explored a new alternative to produce food pigmentation through proteins. Our project utilizes a highly versatile protein pigment from cyanobacteria in order to produce colored proteins capable of acting like a dye. Narrowly, our project goal was to engineer a replacement for the dye Blue #1. Blue #1, or Brilliant Blue, is a major current synthetic dye used extensively in the food industry. This dye is made from the aromatic hydrocarbons from petroleum which peaks at 630nm (8). We chose to attempt an alternative biological synthesis to this dye because blue colors are extremely difficult to replicate in beverages and food (17). Largely this is because natural blue colorants turn pink or violent in high acid food or beverages, like those produced from anthocyanins (17).

One promising alternative to the sustainability issues and lack of blue colorants is Spirulina produced dyes, which were approved by the FDA for use in food production (9). Spirulina color is isolated from the dried biomass of the cyanobacteria Spirulina platensis and is a potential source of blue color (10). Spirulina, however, lacks color vibrancy, temperature stability, and is pH sensitive (28). For these reasons, Spirulina coloring is not able to be used in cereal or beverage production (16) . Other blue natural dye alternatives like blueberries and red cabbage are poor candidates for use in food production since the color is very sensitive to pH and requires arable land (11). Accordingly, a novel solution for blue dye production is required, making it an ideal candidate for our summer research focus.

Our work served as a proof-of-concept that cyanobacteria can be used to produce dyes. Our initial experimentation also suggests that cyanobacteria protein pigments can be adapted to produce other major colors beyond blue through further exploration and development.

We approached this project by thinking about four large technical considerations: protein discovery, novel GAF protein expression, production optimization, and expression in GRAS organism. However, the technical work is only a small part in the larger aim of our project to bring together science, industry regulation, and consumer acceptance.



  1. Trotter, Greg. "Food Companies Are Phasing out Artificial Dyes, but Not Fast Enough for Some." Food Companies Are Phasing out Artificial Dyes, but Not Fast Enough for Some. Chicago Tribune, 24 June 2016. Web. 18 Oct. 2016.
  2. "Konica Minolta - Products." Instrument Systems - Sensing Americans. Konica Minolta Sensing Americans Inc., Oct. 2016. Web. 18 Oct. 2016.
  3. "Our Proposition on Artificial Colors - Colors Policy." MARS Incorporated, Oct. 2016. Web. 18 Oct. 2016.
  4. "Kraft Mac & Cheese Says Goodbye to the Dye." Decision - 2016. NBC News, 20 Apr. 2015. Web. 18 Oct. 2016.
  5. "Taste of General Mills." A Big Commitment for Big G Cereal. General Mills Cereal Incorporated, 22 June 2015. Web. 18 Oct. 2016.
  6. "Nestlé USA Commits to Removing Artificial Flavors and FDA-Certified Colors from All Nestlé Chocolate Candy by the End of 2015." 150 Years of Good Food, Good Life. Nestle Incorporated, 17 Feb. 2015. Web. 18 Oct. 2016.
  7. Alexandratos, Nikos, and Jelle Bruinsma. "World Agriculture Towards 2030/2050." Agricultural Development Economics Division - Food and Agriculture Organization of the United Nations. Global Perspective Studies Team, June 2012. Web. 18 Oct. 2016.
  8. "Compound Summary for CID 19700." Brilliant Blue FCF. Pub Chem - Open Chemistry Database, 15 Oct. 2016. Web. 18 Oct. 2016.
  9. "Summary of Color Additives for Use in the United States in Foods, Drugs, Cosmetics, and Medical Devices." For Industry - Color Additives - Color Additive Inventories. U.S. Food & Drug Administration, May 2016. Web. 18 Oct. 2016.
  10. http://link.springer.com/article/10.1007/s00217-004-1062-7
  11. http://www.instructables.com/id/Blue-Foods-Colorful-cooking-without-artificial-dy/
  12. A Brief History of Phytochrome Nathan C. Rockwell and J. Clark Lagarias
  13. Hirose, Yuu, et al. "Green/red cyanobacteriochromes regulate complementary chromatic acclimation via a protochromic photocycle."Proceedings of the National Academy of Sciences 110.13 (2013): 4974-4979.
  14. Rockwell, Nathan C., and J. Clark Lagarias. "A brief history of phytochromes." ChemPhysChem 11.6 (2010): 1172-1180.
  15. Bussell, Adam N., and David M. Kehoe. “Control of a Four-Color Sensing Photoreceptor by a Two-Color Sensing Photoreceptor Reveals Complex Light Regulation in Cyanobacteria.” Proceedings of the National Academy of Sciences of the United States of America 110.31 (2013): 12834–12839. PMC. Web. 7 Oct. 2016.
  16. http://www.nutritionaloutlook.com/food-beverage/coloring-spirulina-blue
  17. Nature’s Palette: The Search for Natural Blue Colorants
  18. https://www.novozymes.com/en
  19. http://www.dsm.com/corporate/home.html
  20. http://prodata.swmed.edu/promals3d/promals3d.php
  21. https://www.neb.com/products/e6901-impact-kit
  22. Heim R, Cubitt A, Tsien R (1995)."Improved green fluorescence" (PDF). Nature. 373 (6516): 663–4.doi:10.1038/373663b0.PMID7854443.
  23. https://www.ncbi.nlm.nih.gov/genome/browse/
  24. http://pfam.xfam.org/
  25. Red/Green Cyanobacteriochromes: Sensors of Color and Power - lagarias
  26. https://en.wikipedia.org/wiki/Brilliant_Blue_FCF#/media/File:Blue_smarties.JPG
  27. Fischer, A. J. and J. C. Lagarias (2004). "Harnessing phytochrome's glowing potential." Proceedings of the National Academy of Sciences of the United States of America 101(50): 17334-17339.
  28. Stability of phycocyanin extracted from Spirulina sp.: Influence of temperature, pH and preservatives- R Chaiklahan, N Chirasuwan, B Bunnag - Process Biochemistry, 2012 - Elsevier
  29. http://www.lightboxkit.com/Assay_dye.html
  30. "Your Brain - A User's Guide - 100 Things You Never Knew." National Geographic Time INC. Specials 12 Feb. 2016: Print.
  31. Sensing, Konica Minolta. "How Color Affects Your Perception of Food." Konica Minolta Color, Light, and Display Measuring Instruments. Konica Minolta Sensing Americans Inc., 2006. Web. 10 Oct. 2016.
  32. "Center for Disease Control and Prevention - General Information Escherichia Coli." CDC 24/7: Saving Lives, Protecting People. Centers for Disease Control and Prevention, 06 Nov. 2015. Web. 10 Oct. 2016.
  33. Olmos J, Paniagua-Michel J (2014) Bacillus subtilis A Potential Probiotic Bacterium to Formulate Functional Feeds for Aquaculture. J Microb Biochem Technol 6: 361-365. doi:10.4172/1948-5948.1000169
  34. Zeigler, Daniel R. "Bacillus Genetic Stock Center." Bacillus Genetic Stock Center Website. The Bacillus Genetic Stock Center - Biological Sciences, Oct. 2016. Web. 10 Oct. 2016.
  35. Vellanoweth, Robert Luis, and Jesse C. Rabinowitz. "The Influence of Ribosome binding-sites Elements on Translational Efficiency in Bacillus Subtilis and Escherichia Coli in Vivo." Molecular Microbiology 1105-1114, 15 Jan. 1992. Web. 9 Oct. 2016.
  36. "Pveg (Plasmid #55173)." Addgene - The Nonprofit Plasmid Repository. Synthetic Biology; Bacillus BioBrick Box, Aug. 2016. Web. 10 Oct. 2016.
  37. Gambetta, Gregory A., and Clark J. Lagarias. "Genetic Engineering of Phytochrome Biosynthesis in Bacteria." Section: Molecular and Cellular Biology. Proceedings of the National Academy of Sciences of the United States of America, 19 July 2001. Web. 9 Oct. 2016.
  38. "Registry of Standard Biological Parts - B0015." Part: BBa_B0015. International Genetically Engineered Machine Competition (iGEM), 17 July 2003. Web. 9 Oct. 2016.
  39. "Bacillus Subtilis - Indiamart." IndiaMART InterMESH Ltd., n.d. Web. 9 Oct. 2016.