Difference between revisions of "Team:BostonU HW/Notebook/June"

 
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            <h1>Timeline: June</h1>
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                  <a href="https://2016.igem.org/Team:BostonU_HW/Collaborations">Collaborations</a>
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                  <a href="https://2016.igem.org/Team:BostonU_HW/Results">Results</a>
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                  <a href="https://2016.igem.org/Team:BostonU_HW/Design">Design</a>
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                  <a href="https://2016.igem.org/Team:BostonU_HW/Notebook">Timeline</a>
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                  <a href="https://2016.igem.org/Team:BostonU_HW/Safety">Safety</a>
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                  <a href="https://2016.igem.org/Team:BostonU_HW/Integrated_Practices">Integrated Practices</a>
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−
<section id="about">
 
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−
                <div class="col-lg-12 text-center">
 
−
                    <h2 class="section-heading">Week 3: May 30th - June 5th</h2>
 
−
                    <h4 align=left>Created templates to display an svg file
 
−
<br><br>Added functionality to the display by dynamically creating buttons to open and close valves depending on the svg file
 
−
<br><br>Incorporated Ajax to connect to the serial port to connect to an arduino
 
−
<br><br>Used Ajax and post requests to import files from the web-app and save them locally to use for the settings page and the svg image
 
−
<br><br>Ordered parts for the pumps setup
 
−
<br><br>Changed mapper code to differentiate flow from control on an LFR file
 
−
<br><br>Added functionality to mapper to work with the UCF and identify which layer all elements reside in
 
−
<br><br>Implemented control layer in mapper
 
−
</h4>
 
  
−
<br><br>
 
−
<h2 class="section-heading">Weeks 4 and 5: June 6th - June 19th</h2><br>
 
−
                    <h4 align=left>Learnt js, css, html, node.js, express framework, and how to set up effective github repositories
 
−
<br><br>Did some reading about microfluidics: "Microfluidics for synthetic biology: from design to execution," Ferry MS, Razinkov IA, Hasty J.
 
−
<br><br>Framework switched from Webix based implementation to a more standard implementation w/ hybrid of Javascript, CSS, html
 
  
−
<br><br>Assembled the demo board with pump holders and servo holders
+
</body>
−
<br><br>Wrote an Arduino code that gets the code as an input, and turns on the servo
+
−
<br><br>Implemented the display of the SVG graph with buttons to open and close valves
+
−
<br><br>Added file upload functionality to certain pages
+
−
<br><br>Enabled serial communication of valves from the fluigi page to the Arduino
+
−
<br><br>Mapper changed to completely align with place and route with corrected formatting issues and MINT output
+
−
<br><br>Started to integrate mapper into the graphical user interface
+
−
</h4>
+
  
  
−
<br><br>
 
−
<h2 class="section-heading">Week 6: June 20th - June 26th</h2><br>
 
−
                    <h4 align=left>Worked on NEGEM Presentation
 
−
<br><br>Embed text editor for MINT within GUI
 
−
<br><br>Rearrange entire structure of code
 
−
<br><br>Create solidworks designs of pump holders and layout structure
 
−
<br><br>Graphical user interface makeover
 
−
<br><br>Debugging and synchronizing pumps with svg implemented
 
−
</h4>
 
  
−
<br><br>
+
<html>
−
<h2 class="section-heading">Week 7: June 27th - July 3rd</h2><br>
+
−
                    <h4 align=left>Talked to companies such as Lab Central and Ginkgo Labs for sponsorship
+
−
<br><br>Had a meeting with the company Nona to talk about open source work for human practices
+
−
<br><br>Worked on iGEM wiki: Page template and setup, Home page, Attributions page, and Team page
+
−
</h4>
+
  
  
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−
     <!-- Footer -->
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+
 
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                    <h2>Contact Us</h2>
+
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−
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+
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+
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+
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−
                      <a href="mailto:bu.igemhw2016@gmail.com"> Email</a>
+
   
−
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+
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                      <br/><br/><br/>
+
−
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+
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−
                    <hr class="small">
+
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−
                    <p class="text-muted" style="text-align:center">Copyright &copy; Boston University Hardware Team Website 2016</p>
+
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+
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+
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<body>
 +
<!-- PAGE TITLE BANNER -->
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  <div id="greyWrapper">  
 +
    <div class="pageBanner">
 +
      <h3 id="pageTitle">TIMELINE: JUNE</h3>
 +
    </div>
 +
    <br><br><br><br>
 +
 
 +
<div class="row" style="padding-top:100px; padding-bottom:100px;">
 +
  <div class="col-md-1"></div>
 +
  <div class="col-md-10" style="background-color: white; padding-top:30px; padding-bottom:50px;">  
 +
    <div class="row">
 +
      <div class="col-md-1"></div>
 +
      <div class="col-md-10">
 +
        <div style="font-size: 2em; line-height: 150%; color:#355E62;">Notebook</div>
 +
        <br><br>
 +
        <div>
 +
          <ul>
 +
            <li>Switched to node.js template with handlebars to make the GUI after realizing the need of a server to open up local ports and save files  </li>
 +
            <li>Added html pages for the web-app, javascript files for the functionality, and a css file for the look of the pages
 +
</li>
 +
            <li>Created a mockup for the GUI for the microfluidic work flow
 +
</li>
 +
            <li>Decided on a structure to implement pumps using a lever arm</li>
 +
            <li>Created templates to display an svg file </li>
 +
            <li>Added functionality to the display by dynamically creating buttons to open and close valves depending on the svg file  </li>
 +
           
 +
            <li>Incorporated Ajax to connect to the serial port to connect to an arduino </li>
 +
            <li>Used Ajax and post requests to import files from the web-app and save them locally to use for the settings page and the svg image </li>
 +
            <li>Ordered parts for the pumps setup </li>
 +
            <li>Changed mapper code to differentiate flow from control on an LFR file
 +
</li>
 +
            <li>Added functionality to mapper to work with the UCF and identify which layer all elements reside in </li>
 +
            <li>Implemented control layer in mapper</li>
 +
 
 +
 
 +
          </ul>
 
         </div>
 
         </div>
−
     </footer>
+
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 +
      <div class="col-md-1"></div>
 +
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 +
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 +
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 +
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 +
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</body>
 
</html>
 
</html>

Latest revision as of 03:23, 20 October 2016


TIMELINE: JUNE





Notebook


  • Switched to node.js template with handlebars to make the GUI after realizing the need of a server to open up local ports and save files
  • Added html pages for the web-app, javascript files for the functionality, and a css file for the look of the pages
  • Created a mockup for the GUI for the microfluidic work flow
  • Decided on a structure to implement pumps using a lever arm
  • Created templates to display an svg file
  • Added functionality to the display by dynamically creating buttons to open and close valves depending on the svg file
  • Incorporated Ajax to connect to the serial port to connect to an arduino
  • Used Ajax and post requests to import files from the web-app and save them locally to use for the settings page and the svg image
  • Ordered parts for the pumps setup
  • Changed mapper code to differentiate flow from control on an LFR file
  • Added functionality to mapper to work with the UCF and identify which layer all elements reside in
  • Implemented control layer in mapper