Difference between revisions of "Team:William and Mary/Attributions"

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<h3>★  ALERT! </h3>
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<p>This page is used by the judges to evaluate your team for the <a href="https://2016.igem.org/Judging/Medals">Attributions bronze criterion</a>. </p>
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        <div class="wrapper">
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<div class="section section-numbers-2" id="numbers2" style="padding-top: 0px !important; border-top: 0px !important; margin-top: 0px !important;">
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  <div class="parallaxWM pattern-image">
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  <div class="container">
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<div class="col-md-8 col-md-offset-2 text-center">
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<div class="description">
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<div class="title">
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<h2 style='padding-top: 40px; font-family: "Verlag-Book"; font-size: 50px;'>
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Attributions
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</h2>
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</div>
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</div>
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</div>
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  <div class="clearfix"></div>
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  </div>
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</div>
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<div class="section section-we-are-2">
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<div class="text-area">
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<div class="container">
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<div class="row">
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<div class="description">
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<p class='large'>
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We've made it a long way since the summer began, and we could not have done it without
 +
the numerous people and organizations that supported us.
 +
</p>
 +
<p class='large'>
 +
First and foremost, we would like to thank our two team advisors, Dr. Margaret Saha, PI, and Dr. Gregory Smith,
 +
Co-PI. For her countless hours of time and unbounded dedication to our cause, we extend our sincerest thanks to
 +
Dr. Saha. We would also like to extend a special thanks to Dr. Smith for his expertise in mathematical modeling
 +
and his willingness to advise our math team. In addition, we offer our thanks to the Vice Provost for Research,
 +
Dr. Dennis Manos, who has provided strong support, financial and intellectual, for iGEM and the BioEngineering
 +
Initiative at William and Mary. We also thank Dr. Eric Bradley for his endless assistance with facilities and
 +
equipment. Finally, we thank Dr. Mark Forsyth, Dr. Helen Murphy, Dr. Bev Sher, and Dr. Doug Young for their
 +
advice on the project.
 +
</p>
 +
 +
<div align="center">
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<h3 style='padding-top: 50px; padding-bottom: 50px;'>Funding Support</h3>
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</div>
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<p class='large' style='padding-bottom: 50px;'>
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We would also like to thank the following organizations and offices which have generously provided us with the
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financial support necessary to carry out our project, in terms of either supplies or summer stipends.
 +
</p>
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<p class='large' style='text-align: center !important;'>
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Office of the Vice Provost for Research and Graduate Studies
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</p>
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<p class='large' style='text-align: center !important;'>
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William & Mary Dean of Arts & Sciences
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</p>
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<p class='large' style='text-align: center !important;'>
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William & Mary Roy R. Charles Center
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</p>
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<p class='large' style='text-align: center !important;'>
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William and Mary Office of Student Leadership Development
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</p>
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<p class='large' style='text-align: center !important;'>
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EXTREEMS-QED(NSF)
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</p>
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<p class='large' style='text-align: center !important;'>
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HHMI Undergraduate Science Education Grant
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</p>
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<p class='large' style='text-align: center !important;'>
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Arnold and Mabel Beckman Foundation
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</p>
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<p class='large' style='text-align: center !important;'>
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1693 Scholar Program
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</p>
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<p class='large' style='text-align: center !important;'>
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James Monroe Scholar Program
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</p>
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<p class='large' style='text-align: center !important;'>
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Donors to our Experiment Page
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</p>
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<!--SPONSOR LINKS HERE-->
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<p style="text-align: center; padding-top: 30px; padding-bottom: 30px;">
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<img src="https://static.igem.org/mediawiki/2016/c/cd/T--William_and_Mary--wm_logo.png" width=300">
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<img src="https://static.igem.org/mediawiki/2016/9/94/T--William_and_Mary--HHMI.jpg" width="300">
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<img src="https://static.igem.org/mediawiki/2016/1/14/T--William_and_Mary--Beckman.jpg" width="300">
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</p>
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<div align="center">
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<h3 style='padding-top: 50px; padding-bottom: 50px;'>Corporate Sponsors:</h3></div>
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<p style="text-align: center; padding-top: 30px; padding-bottom: 30px;">
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<img src="https://static.igem.org/mediawiki/2016/5/5e/T--William_and_Mary--Macrogen.png" width="250">
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<img src="https://static.igem.org/mediawiki/2016/4/4c/T--William_and_Mary--IDT_logo.jpg" width="250">
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<img src="https://static.igem.org/mediawiki/2016/e/ed/T--William_and_Mary--BWB_logo.png" width="250">
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<img src="https://static.igem.org/mediawiki/2016/b/b9/T--William_and_Mary--Experiment_logo.png" width="250">
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</p>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div align="center">
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<h3 style='padding-top: 50px; padding-bottom: 50px;'>References</h3>
 +
</div>
 +
<p class='large' style="padding-left:70px; padding-bottom: 30px;">
 +
<b>1.</b> Nielsen, A. A., Segall-Shapiro, T. H., & Voigt, C. A. (2013). Advances in genetic circuit design:
 +
Novel biochemistries, deep part mining, and precision gene expression. Current Opinion in Chemical Biology,
 +
17(6), 878-892. doi:<a>http://dx.doi.org/10.1016/j.cbpa.2013.10.003</a>
 +
</p>
 +
<p class='large' style="padding-left:70px; padding-bottom: 30px;">
 +
<b>2.</b> Sun, Z. Z., Yeung, E., Hayes, C. A., Noireaux, V., & Murray, R. M.Linear DNA for rapid prototyping of
 +
synthetic biological circuits in an escherichia coli based TX-TL cell-free system. ACS Synthetic Biology, (6), 387.
 +
doi:10.1021/sb400131a
 +
</p>
 +
<p class='large' style="padding-left:70px; padding-bottom: 30px;">
 +
<b>3.</b> Lucks, J. B., Qi, L., Whitaker, W. R., & Arkin, A. P. (2008). Toward scalable parts families for predictable
 +
design of biological circuits. Current Opinion in Microbiology, 11(6), 567-573. doi:<a>http://dx.doi.org/10.1016/j.mib.2008.10.002</a>
 +
</p>
 +
<p class='large' style="padding-left:70px; padding-bottom: 30px;">
 +
<b>4.</b> Lou, C., Stanton, B., Chen, Y., Munsky, B., & Voigt, C. A. (2012). Ribozyme-based insulator parts buffer
 +
synthetic circuits from genetic context. Nature Biotechnology, (30), 1137-1142.
 +
</p>
 +
<p class='large' style="padding-left:70px; padding-bottom: 30px;">
 +
<b>5.</b> Amit, R., Garcia, H. G., Phillips, R. & Fraser, S. E. Building enhancers from the ground up: a synthetic biology approach. Cell 146, 105–118 (2011).
 +
</p>
 +
<p class='large' style="padding-left:70px; padding-bottom: 30px;">
 +
<b>6.</b> Brewster, R. C., Weinert, F. M., Garcia, H. G., Song, D., Rydenfelt, M., & Phillips, R. (2014). The transcription factor titration effect dictates level of gene expression. Cell, 156(6), 1312. doi:10.1016/j.cell.2014.02.022
 +
</p>
 +
<p class='large' style="padding-left:70px; padding-bottom: 30px;">
 +
<b>7.</b> Castillo-Hair, S. M., Sexton, J. T., Landry, B. P., Olson, E. J., Igoshin, O. A., & Tabor, J. J. (2016). FlowCal: A user-friendly, open source software tool for automatically converting flow cytometry data from arbitrary to calibrated units. ACS synthetic biology.
 +
</p>
 +
<p class='large' style="padding-left:70px; padding-bottom: 30px;">
 +
<b>8.</b> Daniel, R., Rubens, J. R., Sarpeshkar, R., & Lu, T. K. (2013). Synthetic analog computation in living cells.Nature, 497, 619-623. doi:doi:10.1038/nature12148
 +
</p>
 +
<p class = 'large' style="padding-left:70px; padding-bottom: 30px;"> <b>9.</b> Milo, R., Phillips, R., & Orme, N. (2015). Cell biology by the numbers. Garland Science
 +
</p>
 +
<p class='large' style="padding-left:70px; padding-bottom: 30px;">
 +
<b>10.</b> Nielsen, A. A., Segall-Shapiro, T. H., & Voigt, C. A. (2013). Advances in genetic circuit design: Novel biochemistries, deep part mining, and precision gene expression. Current Opinion in Chemical Biology, 17(6), 878-892. doi:http://dx.doi.org/10.1016/j.cbpa.2013.10.003
 +
</p>
 +
<p class='large' style="padding-left:70px; padding-bottom: 30px;">
 +
<b>11.</b> Pothoulakis, G., Ceroni, F., Reeve, B., & Ellis, T. (2014). The spinach RNA aptamer as a characterization tool for synthetic biology. ACS Synthetic Biology, 3(3), 182-187. doi:10.1021/sb400089c
 +
</p>
 +
<p class='large' style="padding-left:70px; padding-bottom: 30px;">
 +
<b>12.</b> So LH, Ghosh A, Zong C, Sepu´lveda LA, Segev R, Golding I. General properties of transcriptional time series in Escherichia coli. Nat Genet. 2011 Jun43(6):554-60
 +
</p>
 +
<p class='large' style="padding-left:70px; padding-bottom: 30px;">
 +
<b>13.</b> Torella, J. P., Boehm, C. R., Lienert, F., Chen, J., Way, J. C., & Silver, P. A. (2014). Rapid construction of insulated genetic circuits via synthetic sequence-guided isothermal assembly. Nucleic Acids Research,42(1), 681-689. doi:doi:10.1093/nar/gkt860
 +
</p>
 +
<p class='large' style="padding-left:70px; padding-bottom: 30px;">
 +
<b>14.</b> Briggs, A. W., Rios, X., Chari, R., Yang, L., Zhang, F., Mali, P., & Church, G. M. (2012). Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers. Nucleic Acids Research, 40(15), e117. http://doi.org/10.1093/nar/gks624
 +
</p>
 +
</div>
  
  
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<p> Delete this box in order to be evaluated for this medal. See more information at <a href="https://2016.igem.org/Judging/Pages_for_Awards/Instructions"> Instructions for Pages for awards</a>.</p>
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<p> Each team must clearly attribute work done by the student team members on this page. The team must distinguish work done by the students from work done by others, including the host labs, advisors, instructors, and individuals not on the team roster. </p>
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<h5> Why is this page needed? </h5>
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<p>The Attribution requirement helps the judges know what you did yourselves and what you had help with. We don't mind if you get help with difficult or complex techniques, but you must report what work your team did and what work was done by others.</p>
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<p>
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For example, you might choose to work with an animal model during your project. Working with animals requires getting a license and applying far in advance to conduct certain experiments in many countries. This is difficult to achieve during the course of a summer, but much easier if you can work with a postdoc or PI who has the right licenses.</p>
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<h5> What should this page have?</h5>
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<li>General Support</li>
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<li>Project support and advice</li>
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<li>Fundraising help and advice</li>
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<li>Lab support</li>
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<li>Presentation coaching</li>
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<li>Human Practices support</li>
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<li> Thanks and acknowledgements for all other people involved in helping make a successful iGEM team</li>
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<h5> Can we base our project on a previous one? </h5>
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<p>Yes! You can have a project based on a previous team, or based on someone else's idea, <b>as long as you state this fact very clearly and give credit for the original project.</b> </p>
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<h5>Inspiration</h5>
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<p>Take a look at what other teams have done:</p>
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<li><a href="https://2011.igem.org/Team:Imperial_College_London/Team">2011 Imperial College London</a> (scroll to the bottom)</li>
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<li><a href="https://2014.igem.org/Team:Exeter/Attributions">2014 Exeter </a></li>
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<li><a href="https://2014.igem.org/Team:Melbourne/Attributions">2014 Melbourne </a></li>
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<p>Tell us if your institution teaches an iGEM or synthetic biology class and when you started your project:</p>
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Latest revision as of 03:53, 20 October 2016


...

Attributions

We've made it a long way since the summer began, and we could not have done it without the numerous people and organizations that supported us.

First and foremost, we would like to thank our two team advisors, Dr. Margaret Saha, PI, and Dr. Gregory Smith, Co-PI. For her countless hours of time and unbounded dedication to our cause, we extend our sincerest thanks to Dr. Saha. We would also like to extend a special thanks to Dr. Smith for his expertise in mathematical modeling and his willingness to advise our math team. In addition, we offer our thanks to the Vice Provost for Research, Dr. Dennis Manos, who has provided strong support, financial and intellectual, for iGEM and the BioEngineering Initiative at William and Mary. We also thank Dr. Eric Bradley for his endless assistance with facilities and equipment. Finally, we thank Dr. Mark Forsyth, Dr. Helen Murphy, Dr. Bev Sher, and Dr. Doug Young for their advice on the project.

Funding Support

We would also like to thank the following organizations and offices which have generously provided us with the financial support necessary to carry out our project, in terms of either supplies or summer stipends.

Office of the Vice Provost for Research and Graduate Studies

William & Mary Dean of Arts & Sciences

William & Mary Roy R. Charles Center

William and Mary Office of Student Leadership Development

EXTREEMS-QED(NSF)

HHMI Undergraduate Science Education Grant

Arnold and Mabel Beckman Foundation

1693 Scholar Program

James Monroe Scholar Program

Donors to our Experiment Page

Corporate Sponsors:

References

1. Nielsen, A. A., Segall-Shapiro, T. H., & Voigt, C. A. (2013). Advances in genetic circuit design: Novel biochemistries, deep part mining, and precision gene expression. Current Opinion in Chemical Biology, 17(6), 878-892. doi:http://dx.doi.org/10.1016/j.cbpa.2013.10.003

2. Sun, Z. Z., Yeung, E., Hayes, C. A., Noireaux, V., & Murray, R. M.Linear DNA for rapid prototyping of synthetic biological circuits in an escherichia coli based TX-TL cell-free system. ACS Synthetic Biology, (6), 387. doi:10.1021/sb400131a

3. Lucks, J. B., Qi, L., Whitaker, W. R., & Arkin, A. P. (2008). Toward scalable parts families for predictable design of biological circuits. Current Opinion in Microbiology, 11(6), 567-573. doi:http://dx.doi.org/10.1016/j.mib.2008.10.002

4. Lou, C., Stanton, B., Chen, Y., Munsky, B., & Voigt, C. A. (2012). Ribozyme-based insulator parts buffer synthetic circuits from genetic context. Nature Biotechnology, (30), 1137-1142.

5. Amit, R., Garcia, H. G., Phillips, R. & Fraser, S. E. Building enhancers from the ground up: a synthetic biology approach. Cell 146, 105–118 (2011).

6. Brewster, R. C., Weinert, F. M., Garcia, H. G., Song, D., Rydenfelt, M., & Phillips, R. (2014). The transcription factor titration effect dictates level of gene expression. Cell, 156(6), 1312. doi:10.1016/j.cell.2014.02.022

7. Castillo-Hair, S. M., Sexton, J. T., Landry, B. P., Olson, E. J., Igoshin, O. A., & Tabor, J. J. (2016). FlowCal: A user-friendly, open source software tool for automatically converting flow cytometry data from arbitrary to calibrated units. ACS synthetic biology.

8. Daniel, R., Rubens, J. R., Sarpeshkar, R., & Lu, T. K. (2013). Synthetic analog computation in living cells.Nature, 497, 619-623. doi:doi:10.1038/nature12148

9. Milo, R., Phillips, R., & Orme, N. (2015). Cell biology by the numbers. Garland Science

10. Nielsen, A. A., Segall-Shapiro, T. H., & Voigt, C. A. (2013). Advances in genetic circuit design: Novel biochemistries, deep part mining, and precision gene expression. Current Opinion in Chemical Biology, 17(6), 878-892. doi:http://dx.doi.org/10.1016/j.cbpa.2013.10.003

11. Pothoulakis, G., Ceroni, F., Reeve, B., & Ellis, T. (2014). The spinach RNA aptamer as a characterization tool for synthetic biology. ACS Synthetic Biology, 3(3), 182-187. doi:10.1021/sb400089c

12. So LH, Ghosh A, Zong C, Sepu´lveda LA, Segev R, Golding I. General properties of transcriptional time series in Escherichia coli. Nat Genet. 2011 Jun43(6):554-60

13. Torella, J. P., Boehm, C. R., Lienert, F., Chen, J., Way, J. C., & Silver, P. A. (2014). Rapid construction of insulated genetic circuits via synthetic sequence-guided isothermal assembly. Nucleic Acids Research,42(1), 681-689. doi:doi:10.1093/nar/gkt860

14. Briggs, A. W., Rios, X., Chari, R., Yang, L., Zhang, F., Mali, P., & Church, G. M. (2012). Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers. Nucleic Acids Research, 40(15), e117. http://doi.org/10.1093/nar/gks624