Difference between revisions of "Team:OUC-China/Software"

 
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  <title>Software</title>
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#para{
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<p>Regardless of the topic, iGEM projects often create or adapt computational tools to move the project forward. Because they are born out of a direct practical need, these software tools (or new computational methods) can be surprisingly useful for other teams. Without necessarily being big or complex, they can make the crucial difference to a project's success. This award tries to find and honor such "nuggets" of computational work.</p>
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<h5> Inspiration </h5>
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Here are a few examples from previous teams:
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<li><a href="https://2013.igem.org/Team:TU-Munich/Results/Software">TU Munich 2013</a></li>
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<li><a href="https://2014.igem.org/Team:Heidelberg/Software">Heidelberg 2014</a></li>
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<li><a href="https://2014.igem.org/Team:Aachen/Project/Measurement_Device#Software">Aachen 2014</a></li>
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}
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    .oucBanner{background:url('https://static.igem.org/mediawiki/2016/e/ee/T--OUC-China--banner.fw.png');}
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.oucNav{background:url(https://static.igem.org/mediawiki/2016/d/d0/T--OUC-China--nav-1.fw.png);}
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ul[class=dropdown-menu]{background:url(https://static.igem.org/mediawiki/2016/d/d0/T--OUC-China--nav-1.fw.png);}
  
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<div class="container">
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<nav class="oucNav navbar navbar-default navbar-fixed-top" role="navigation">
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  <a class="navbar-brand oucBrand" href="#"><img src="https://static.igem.org/mediawiki/2016/f/fc/T--OUC-China--nav-logo-1.fw.png" alt="Brand"></a>
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<div class="collapse navbar-collapse" id="example-navbar-collapse">
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<li><a href="https://2016.igem.org/Team:OUC-China">Home</a></li>
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<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Project<span class="caret"></span></a>
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<ul class="dropdown-menu">
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<li><a href="https://2016.igem.org/Team:OUC-China/Project">Introduction</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Design">Design</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Proof">Proof of concept </a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Results">Results</a></li>
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<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Parts<span class="caret"></span></a>
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<li><a href="https://2016.igem.org/Team:OUC-China/Parts">Parts</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Basic_Part">Basic part</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Composite_Part">Composite parts</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Part_Collection">Part collection</a></li>
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<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Human Practice<span class="caret"></span></a>
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<li><a href="https://2016.igem.org/Team:OUC-China/Human_Practices">Overview</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Communicating">Communicating & Improving</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Investigating">Investigating & Promoting</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Potential_application">Potential application</a></li>
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<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Team<span class="caret"></span></a>
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<li><a href="https://2016.igem.org/Team:OUC-China/Team">Team</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Collaborations">Collaborations</a></li>
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</ul>
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<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Modeling<span class="caret"></span></a>
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<ul class="dropdown-menu">
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<li><a href="https://2016.igem.org/Team:OUC-China/Model">Model</a></li>
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<li class="active"><a href="https://2016.igem.org/Team:OUC-China/Software">Software</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Attributions">Attributions</a></li>
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<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Safety<span class="caret"></span></a>
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<li><a href="https://2016.igem.org/Team:OUC-China/Notebook">Notebook</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Protocol">Protocol</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Safety">Safety</a></li>
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        <div class="img_banner"><img src="https://static.igem.org/mediawiki/2016/0/0c/T--OUC-China--Software.jpg" class="img-responsive" alt="protocol-banner"></div>
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<div class="oucMovie" style="background:url('https://static.igem.org/mediawiki/2016/9/99/T--OUC-China--movie-1.fw.png');width:100%;height:400px;">
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<div id="para">
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<p>We have developed our own software which provides a database of stem loops. When users upload their own sequence, the software can find out corresponding stem loops and store them into the database. Moreover, when users need proteins expressed in specific quantity, such as inputting the ratio of two different proteins, the software can provide suitable stem loops according to the ratio. The relationship between the quantitative expression of protein and the folding energy is based on our modeling.</p>
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<p>With the help of this database, we can regulate the protein expression level more rationally, more precisely and more quickly. We believe that our toolbox will play a part in prokaryotic regulation field.</p>
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<p>This database is based on Apache/PHP/MySQL environment. If you want to see our source code and operation guide. Please download this <a href="https://static.igem.org/mediawiki/2016/5/56/Code_%26_Guide.zip">zip</a>.</p>
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<p>Here is our software <a href="https://static.igem.org/mediawiki/2016/e/e9/T--OUC-China--handbook.pdf">handbook</a>.</p>
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            <br><br><br><br>
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        <h3 class="text-center">Cistrons Concerto</h3>
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<div class="row oucInformation">
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<div class="col-md-1"></div>
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<div class="col-md-5">
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<h3>Thanks:</h3>
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<p>1.Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences</p>
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<p>2.NEW ENGLAND Biolabs</p>
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</div>
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<div class="col-md-5 Contact">
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<h3>Contact us:</h3>
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<p><b>E-mail</b>: oucigem@163.com</p>
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<p><b>Designed and built</b> by @ Jasmine Chen and @ Zexin Jiao</p>
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<p>We are OUC-iGEM
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<img src="https://static.igem.org/mediawiki/2016/5/58/T--OUC-China--foot4.png" width="70" height="70" alt="logo-one">
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<img src="https://static.igem.org/mediawiki/2016/9/9b/T--OUC-China--foot5.png" width="70" height="70" alt="logo-two">
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Latest revision as of 12:39, 30 November 2016

Software

protocol-banner




We have developed our own software which provides a database of stem loops. When users upload their own sequence, the software can find out corresponding stem loops and store them into the database. Moreover, when users need proteins expressed in specific quantity, such as inputting the ratio of two different proteins, the software can provide suitable stem loops according to the ratio. The relationship between the quantitative expression of protein and the folding energy is based on our modeling.

With the help of this database, we can regulate the protein expression level more rationally, more precisely and more quickly. We believe that our toolbox will play a part in prokaryotic regulation field.

This database is based on Apache/PHP/MySQL environment. If you want to see our source code and operation guide. Please download this zip.

Here is our software handbook.





Cistrons Concerto

Thanks:

1.Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences

2.NEW ENGLAND Biolabs

Contact us:

E-mail: oucigem@163.com

Designed and built by @ Jasmine Chen and @ Zexin Jiao

We are OUC-iGEM logo-one logo-two