Difference between revisions of "Team:Paris Saclay/Notebook/September/16"
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(→Colony PCR of 16 clones containing FRB - GFP 11 in pSB1C3) |
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''By Maxence & Mahnaz'' | ''By Maxence & Mahnaz'' | ||
| − | Colonies were obtained for the Gibson done the | + | Colonies were obtained for the Gibson done the 15th September. A colony PCR was done for 16 clones from the 15th September. For that purpose, 16 were screened and used for the usual [[Team:Paris_Saclay/Experiments##Polymerase_chain_reaction|protocol]] of Colony PCR. The same colonies were also plated on Petri dish containing solid LB + 30 µg/mL Cm and liquid cultures (LB + 30 µg/mL Cm) were made from these clones. Both petri dishes and liquid cultures were grown at 37°C. |
For each clones contained in 20 μl water, 4.13 μL of the following mix were added : | For each clones contained in 20 μl water, 4.13 μL of the following mix were added : | ||
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!Matrix | !Matrix | ||
| − | !Clones containing | + | !Clones containing FKBP - GFP 10 in pSB1C3 |
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|Primers | |Primers | ||
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!Expected band size (bp) | !Expected band size (bp) | ||
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| − | | | + | |FKBP - GFP 10 in pSB1C3 |
| − | | | + | |757 |
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| − | GEL | + | GEL |
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====PCR of pSB1C3 from dCas9 ST - GFP 11 clone 8 to correct mutations ==== | ====PCR of pSB1C3 from dCas9 ST - GFP 11 clone 8 to correct mutations ==== | ||
Revision as of 07:59, 16 September 2016
Contents
Friday 16th September
Lab work
Visualization
Colony PCR of 16 clones containing FRB - GFP 11 in pSB1C3
By Maxence & Mahnaz
Colonies were obtained for the Gibson done the 15th September. A colony PCR was done for 16 clones from the 15th September. For that purpose, 16 were screened and used for the usual protocol of Colony PCR. The same colonies were also plated on Petri dish containing solid LB + 30 µg/mL Cm and liquid cultures (LB + 30 µg/mL Cm) were made from these clones. Both petri dishes and liquid cultures were grown at 37°C.
For each clones contained in 20 μl water, 4.13 μL of the following mix were added :
- 2.5 µL DreamTaq Buffer
- 0.5 µL of dNTPs (10mM)
- 1 µL of each primer mix (10µM)
- 0.13 μl of DreamTaq Pol
PCR was performed as follow:
| Step | Temperature | Time |
|---|---|---|
| Initial denaturation | 95°C | 3 min |
| 30 cycles | 95°C | 30 sec |
| 61°C | 30 sec | |
| 72°C | 1 min 30 sec | |
| Final Extension | 72°C | 7 min |
| Hold | 4°C | $\infinity\$ |
Primers used were:
| Matrix | Clones containing FKBP - GFP 10 in pSB1C3 |
|---|---|
| Primers | iPS83 and iPS84 |
After amplification, 3 µL of each PCR products and 5 µL of DNA ladder were placed in wells and migrated at 100V during 30 min.
PCR products expected were :
| PCR products | Expected band size (bp) |
|---|---|
| FKBP - GFP 10 in pSB1C3 | 757 |
GEL
PCR of pSB1C3 from dCas9 ST - GFP 11 clone 8 to correct mutations
By Maxence
In order to correct mutations in dCas9 ST - GFP 11, PCR was performed with the following protocol.
For each 50μl of reaction, mix the following reagents :
- 1 µL of matrix
- 1 µL of dNTPs (10mM)
- 2.5 µL of each primer mix (10µM)
- 10 µL of buffer HF (5X)
- 0,5 µL of Phusion polymerase
- 32.5 µL of nuclease free water
Mix gently and aliquot 50 μl of the mix into the PCR tubes on ice. Perform PCR as follow:
| Step | Temperature | Time |
|---|---|---|
| Initial denaturation | 98°C | 30sec |
| 30 cycles | 98°C | 10sec |
| 72°C | 30sec | |
| 72°C | t | |
| Final Extension | 72°C | 5min |
| Hold | 4°C | $\infty$ |
Primers used were:
| Matrix | dCas9 ST - GFP 11 clone 8 | dCas9 ST - GFP 11 clone 8 |
|---|---|---|
| Primers | iPS174 and iPS175 | iPS173 and iPS176 |
| Tm | 72°C | 72°C |
| t | 3min | 50sec |
