Difference between revisions of "Team:Tokyo Tech/AHL Assay/AHL Reporter Assay"
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| − | <p class="normal_text"> The purpose of our experiments is to confirm inducibility of Prhl (BBa_I14017), Plux (BBa_R0062), and Plas (BBa_R0079) promoters upon addition of different AHLs. When the C4, C6, and C12 molecules | + | <p class="normal_text"> The purpose of our experiments is to confirm inducibility of Prhl (BBa_I14017), Plux (BBa_R0062), and Plas (BBa_R0079) promoters upon addition of different AHLs. When the C4, C6, and C12 molecules internalize into <i>E. coli</i> cells, these molecules are accepted by the corresponding receptor proteins, RhlR, LuxR, and LasR, respectively. Then, the RhlR-C4, LuxR-C6, and LasR-C12 complexes activate/repress transcription from the Prhl, Plux, and Plas, respectively. However, it should be considered that illegitimate reactions of an AHL to different receptor proteins also occur to some extent. This phenomenon is called crosstalk. We wanted to seek the best combination of AHL systems for co-culture of Snow White <span style ="font-style : italic"> coli</span> and Queen <span style="font-style : italic">coli</span>. To this end, three plasmids shown below (Fig.3-2-1-5) were constructed and RFU of GFP/Turbidity after adding each AHL to culture medium was measured. |
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<p class="normal_text"> Our experiments proved that our parts worked as expected (Fig.3-2-1-3-1).<br> | <p class="normal_text"> Our experiments proved that our parts worked as expected (Fig.3-2-1-3-1).<br> | ||
The ratio of promoter strength was Prhl : Pux : Plas= 2 : 40 :1.<br> | The ratio of promoter strength was Prhl : Pux : Plas= 2 : 40 :1.<br> | ||
| − | The Lux system, which is usually activated by C6, reacted not only to C6 but also C12 (crosstalk). The reaction rate to C12 was half as that | + | The Lux system, which is usually activated by C6, reacted not only to C6 but also C12 (crosstalk). The reaction rate to C12 was half as that to C6. The Rhl system, which is usually activated by C4, reacted not only C4 but also C6 (crosstalk). The reaction rate to C6 was 0.78-fold relative to that to C4. |
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| − | <p class="normal_text"> Considering | + | <p class="normal_text"> Considering different expression level from each AHL-inducible promoter, we should find and use the appropriate combination of the AHL molecules and the receptor proteins for our final genetic circuits. Furthermore, the above results implied that using C12 but not C6 was better to orchestrate the expression controlled by Plux. However, it is not enough to endow Prhl the equal promoter activity of Plux. In fact, we simulated our final circuits and found that the Prhl activity was too weak compared to Plux to work our final circuits (see the Modeling page). Taken together these results, we decided to improve the Prhl to increase its activity (see the Rhl System Assay page). |
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Revision as of 03:10, 14 October 2016
3-2-1 AHL Reporter Assay
Contents
1. Introduction
AHLs, which stand for [N-]acyl-homoserine lactones, are small signaling molecules and are employed in bacterial “Quorum Sensing” system. In our project, we decided to use three AHLs studied well by several preceding iGEM Teams; the AHL molecules used here were C4HSL (hereafter referred to as C4), 3OC6HSL (C6), and 3OC12HSL (C12).
2. Summary of the Experiment
The purpose of our experiments is to confirm inducibility of Prhl (BBa_I14017), Plux (BBa_R0062), and Plas (BBa_R0079) promoters upon addition of different AHLs. When the C4, C6, and C12 molecules internalize into E. coli cells, these molecules are accepted by the corresponding receptor proteins, RhlR, LuxR, and LasR, respectively. Then, the RhlR-C4, LuxR-C6, and LasR-C12 complexes activate/repress transcription from the Prhl, Plux, and Plas, respectively. However, it should be considered that illegitimate reactions of an AHL to different receptor proteins also occur to some extent. This phenomenon is called crosstalk. We wanted to seek the best combination of AHL systems for co-culture of Snow White coli and Queen coli. To this end, three plasmids shown below (Fig.3-2-1-5) were constructed and RFU of GFP/Turbidity after adding each AHL to culture medium was measured.
3. Results
Our experiments proved that our parts worked as expected (Fig.3-2-1-3-1).
The ratio of promoter strength was Prhl : Pux : Plas= 2 : 40 :1.
The Lux system, which is usually activated by C6, reacted not only to C6 but also C12 (crosstalk). The reaction rate to C12 was half as that to C6. The Rhl system, which is usually activated by C4, reacted not only C4 but also C6 (crosstalk). The reaction rate to C6 was 0.78-fold relative to that to C4.
Fig. 3-2-1-3-1 RFU of GFP/ Turbidity of AHL Reporter Assay
4. Discussion
Considering different expression level from each AHL-inducible promoter, we should find and use the appropriate combination of the AHL molecules and the receptor proteins for our final genetic circuits. Furthermore, the above results implied that using C12 but not C6 was better to orchestrate the expression controlled by Plux. However, it is not enough to endow Prhl the equal promoter activity of Plux. In fact, we simulated our final circuits and found that the Prhl activity was too weak compared to Plux to work our final circuits (see the Modeling page). Taken together these results, we decided to improve the Prhl to increase its activity (see the Rhl System Assay page).
5. Materials and Methods
5-1. Construction
-Strain
All the plasmids were prepared in XL-1 Blue strain.
-Plasmids
A. Pcon-rhlR-Prhl-gfp (pSB6A1) (Fig. 3-2-1-5-1)
Fig. 3-2-1-5-1 Pcon-rhlR-Prhl-gfp (pSB6A1)
B. Pcon-luxR-Plux-gfp (pSB6A1) (Fig. 3-2-1-5-2)
Fig. 3-2-1-5-2 Pcon-rhlR-Prhl-gfp (pSB6A1)
C. Pcon-lasR-Plas-gfp (pBS6A1) (Fig. 3-2-1-5-3)
Fig. 3-2-1-5-3 Pcon-lasR-Plas-gfp (pBS6A1)
D. Pcon-gfp (pSB6A1) …Positive control (Fig. 3-2-1-5-4)
Fig. 3-2-1-5-4 Pcon-gfp (pSB6A1)
E. pSB6A1 …Nagative control (Fig. 3-2-1-5-5)
Fig. 3-2-1-5-5 pSB6A1
-Medium
LB medium A
LB medium containing ampicillin (50 microg/ mL)
5-2. Assay Protocol
The following experiments is performed at 37℃ unless otherwise stated.
1) Prepare overnight cultures for each sample in 3 mL LB medium A with vigorous shaking.
2) Dilute the overnight cultures to 1 / 60 in fresh LB medium A (1.2 mL).
3) Incubate the fresh cultures for 1 h with vigorous shaking.
4) Add 500 microM C4, 500 microM C6, 500 microM C12 or DMSO to each 500 microL sample at the final concentration 10 microM.
5) Incubate the samples for 4 h with vigorous shaking.
6) Add 100 microL of the samples into each well of a plate reader.
7) Measure RFU of GFP / Turbidity at 490 nm as an exciting wavelength, 525 nm as an emission wavelength.
8) Measure the Turbidity at 600 nm.
6. Reference
(1) Kendall M. Gray et al. (1994) Interchangeability and specificity of components from the quorum-sensing regulatory systems of Vibrio fischeri and Pseudomonas aeruginosa. Journal of Bacteriology 176(10): 3076–3080
