Difference between revisions of "Team:OUC-China/Software"

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   <meta charset="UTF-8">
 
   <meta charset="UTF-8">
 
   <meta name="viewport" content="width=device-width, initial-scale=1, maximum-scale=1, user-scalable=no">
 
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  <meta name="Description" content="描述">
 
 
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   <link rel="stylesheet" href="https://2016.igem.org/Team:OUC-China/css/bootstrap-min?action=raw&amp;ctype=text/css">
 
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   <title>Protocol</title>
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   <title>Model</title>
 
<style type="text/css">
 
<style type="text/css">
       
 
 
         .banner-top{
 
         .banner-top{
 
             margin-left: 12%;
 
             margin-left: 12%;
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padding: 0px;
 
padding: 0px;
 
}
 
}
/* disable IGEM's style */
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/*#bodyContent h1, #bodyContent h2, #bodyContent h3, #bodyContent h4, #bodyContent h5, #bodyContent h6 {
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border-bottom: none;
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.oucNav{background:url(https://static.igem.org/mediawiki/2016/d/d0/T--OUC-China--nav-1.fw.png);}
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#bodyContent a {
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font-size: 100%;
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        .oucprotocol p a{text-decoration:none;}
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        .oucprotocol p a:hover{color:red;}
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</style>
 
</style>
  
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<body>  
 
<body>  
 
<div class="container">
 
<div class="container">
<nav class="oucNav navbar navbar-default navbar-fixed-top" role="navigation">  
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<nav class="oucNav navbar navbar-default navbar-fixed-top" role="navigation">
 
<div class="container">
 
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<div class="navbar-header">  
 
<div class="navbar-header">  
 
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  data-target="#example-navbar-collapse">  
 
  data-target="#example-navbar-collapse">  
  <span class="sr-only">切换导航</span>  
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  <span class="sr-only">Turn</span>  
 
  <span class="icon-bar"></span>  
 
  <span class="icon-bar"></span>  
 
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<div class="collapse navbar-collapse" id="example-navbar-collapse">  
 
<div class="collapse navbar-collapse" id="example-navbar-collapse">  
 
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<li><a href="https://2016.igem.org/Team:OUC-China">Home</a></li>
 
<li><a href="https://2016.igem.org/Team:OUC-China">Home</a></li>
<li><a href="https://2016.igem.org/Team:OUC-China/Project">Project</a></li>
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<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Project<span class="caret"></span></a>
<li><a href="https://2016.igem.org/Team:OUC-China/Model">Model</a></li>
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<ul class="dropdown-menu">
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<li><a ref="https://2016.igem.org/Team:OUC-China/Project">Introduction</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Design">Design</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Proof">Proof of concept </a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Results">Results</a></li>
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</ul>
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</li>
 
<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Parts<span class="caret"></span></a>
 
<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Parts<span class="caret"></span></a>
 
<ul class="dropdown-menu">
 
<ul class="dropdown-menu">
<li><a href="#">Basic part</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Parts">Parts</a></li>
<li><a href="#">Composite parts</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Basic_Part">Basic part</a></li>
<li><a href="#">Part collection</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Composite_Part">Composite parts</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Part_Collection">Part collection</a></li>
 
</ul>
 
</ul>
 
</li>
 
</li>
<li><a href="https://2016.igem.org/Team:OUC-China/Team">Team</a></li>
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<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Human Practice<span class="caret"></span></a>
<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Notebook<span class="caret"></span></a>
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<ul class="dropdown-menu">
 
<ul class="dropdown-menu">
<li><a href="https://2016.igem.org/Team:OUC-China/Notebook">Notebook</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Human_Practices">Overview</a></li>
                                                                <li class="active"><a href="#">Protocol</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Communicating_&_improving">Communicating & improving</a></li>
<li><a href="https://2016.igem.org/Team:OUC-China/Safety">Safety</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Investigating_&_promoting">Investigating & promoting</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Potential_application">Potential application</a></li>
 
</ul>
 
</ul>
 
</li>
 
</li>
<li><a href="https://2016.igem.org/Team:OUC-China/Human_Practices">Human Practices</a></li>
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<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Team<span class="caret"></span></a>
<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Others<span class="caret"></span></a>
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<ul class="dropdown-menu">
 
<ul class="dropdown-menu">
<li><a href="https://2016.igem.org/Team:OUC-China/Attributions">Attributions</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Team">Team</a></li>
 
<li><a href="https://2016.igem.org/Team:OUC-China/Collaborations">Collaborations</a></li>
 
<li><a href="https://2016.igem.org/Team:OUC-China/Collaborations">Collaborations</a></li>
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</ul>
 +
</li>
 +
<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Modeling<span class="caret"></span></a>
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<ul class="dropdown-menu">
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<li><a href="https://2016.igem.org/Team:OUC-China/Model">Model</a></li>
 +
<li class="active"><a href="https://2016.igem.org/Team:OUC-China/Software">Software</a></li>
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</ul>
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</li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Attributions">Attributions</a></li>
 +
<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Safety<span class="caret"></span></a>
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<ul class="dropdown-menu">
 +
<li><a href="https://2016.igem.org/Team:OUC-China/Notebook">Notebook</a></li>
 +
<li><a href="https://2016.igem.org/Team:OUC-China/Protocol">Protocol</a></li>
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<li><a href="https://2016.igem.org/Team:OUC-China/Safety">Safety</a></li>
 
</ul>
 
</ul>
 
</li>
 
</li>
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                 </div>
 
                 </div>
 
 
<div class="oucBanner">
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<div class="oucBanner">
<h3 class="text-center">Cistrons Concerto</h3>
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        <h3 class="text-center">Cistrons Concerto</h3>
</div>
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</div>
<div class="row oucInformation" style="text-align:left">
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<div class="row oucInformation">
 
<div class="col-md-1"></div>
 
<div class="col-md-1"></div>
 
<div class="col-md-5">
 
<div class="col-md-5">
<b>About:</b>
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<h3>About:</h3>
<p style="margin-top:20px;">Thanks to:<img src="https://static.igem.org/mediawiki/2016/e/ec/T--OUC-China--CAS.jpg" style="margin-left:10px;" alt="Qingdao Institute of Bioenergy and Bioprocess Technology,Chinese Academy of Sciences" width="220" height="32"><img src="https://static.igem.org/mediawiki/2016/7/7b/T--OUC-China--NEB.png" style="margin-left:10px;" alt="Biolabs" width="70px" height="32px"></p>
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<br>
<p style="margin-top:20px;">Designed and built by @ Jasmine Chen and @ Zexin Jiao</p>
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<p>Thanks to:<img src="https://static.igem.org/mediawiki/2016/5/57/T--OUC-China--foot1.jpg"alt="Qingdao Institute of Bioenergy and Bioprocess Technology,Chinese Academy of Sciences"><img src="https://static.igem.org/mediawiki/2016/f/f0/T--OUC-China--foot2.jpg"alt="Biolabs"></p>
<p style="margin-top:20px;">Code licensed under Apache License v4.0</p>
+
<p>Designed and built by @ Jasmine Chen and @ Zexin Jiao</p>
 +
<p>Code licensed under Apache License v4.0</p>
 
</div>
 
</div>
 
<div class="col-md-1"></div>
 
<div class="col-md-1"></div>
 
<div class="col-md-5">
 
<div class="col-md-5">
<b>Contact us:</b>
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<h3>Contact us:</h3>
<p style="margin-top:20px;">E-mail: oucigem@163.com</p>
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<br>
<p>Follow us on Facebook@ iGEM OUC<img src="https://static.igem.org/mediawiki/2016/9/94/T--OUC-China--foot3.png" style="margin-left:20px;" alt="Facebook"></p>
+
<p>E-mail: oucigem@163.com</p>
 +
<p>Follow us on Facebook@ iGEM OUC<img src="https://static.igem.org/mediawiki/2016/9/94/T--OUC-China--foot3.png" alt="Facebook"></p>
 
<p>Find us on Google Map</p>
 
<p>Find us on Google Map</p>
<p>We are OUC-iGEM<img src="https://static.igem.org/mediawiki/2016/0/04/T--OUC-China--OUC.png" style="margin-left:10px;" alt="logo-one" width="50px" height="50px"><img src="https://static.igem.org/mediawiki/2016/9/9b/T--OUC-China--Kexie.png" style="margin-left:10px;" alt="logo-two" width="50px";height="50px"></p>
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<p>We are OUC-iGEM<img src="https://static.igem.org/mediawiki/2016/5/58/T--OUC-China--foot4.png" alt="logo-one"><img src="https://static.igem.org/mediawiki/2016/9/9b/T--OUC-China--foot5.png" alt="logo-two"></p>
 
</div>
 
</div>
 
</div>
 
</div>

Revision as of 11:49, 16 October 2016

Model

protocol-banner




We have developed our own software which provides a database of stem loops. When users send the sequence to the server by uploading their own sequence or inputting a NCBI accession number, the software can find out corresponding useful stem loops and store them into the database. Moreover, when users need the protein express in quantification, for example inputting the ratio of two different proteins, the software can provide the most suitable stem loops according to the ratio. The relationship between the quantitative expression of protein and the free energy is based on our modeling.
With the help of this software/database, we can regulate the protein expression level more rationally, more precisely and more quickly. We have already created a platform/toolbox for quantitative expression using stem loops with various free energy. We believe that our platform will play a great role in prokaryote regulation field.





Cistrons Concerto

About:


Thanks to:Qingdao Institute of Bioenergy and Bioprocess Technology,Chinese Academy of SciencesBiolabs

Designed and built by @ Jasmine Chen and @ Zexin Jiao

Code licensed under Apache License v4.0

Contact us:


E-mail: oucigem@163.com

Follow us on Facebook@ iGEM OUCFacebook

Find us on Google Map

We are OUC-iGEMlogo-onelogo-two