Mtdavies1995 (Talk | contribs) |
Mtdavies1995 (Talk | contribs) |
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<p id="ParameterSourcing" style="border-bottom: 1px black solid ;font-size:25px;text-weight:bold;display:inline-block">Parameter Sourcing</p> | <p id="ParameterSourcing" style="border-bottom: 1px black solid ;font-size:25px;text-weight:bold;display:inline-block">Parameter Sourcing</p> | ||
<p> | <p> | ||
− | Kcat and | + | Kcat and K<sub>m</sub> parameters were collected from |
<a href="http://www.brenda-enzymes.org/enzyme.php?ecno=1.1.3.4" target="_blank">BRENDA</a> | <a href="http://www.brenda-enzymes.org/enzyme.php?ecno=1.1.3.4" target="_blank">BRENDA</a> | ||
</p> | </p> | ||
<p> | <p> | ||
− | + | K<sub>eq</sub> was calculated using the Van’t Hoff equation using the Gibbs free energy sourced from | |
<a href="http://www.metacyc.org/META/NEW-IMAGE?type=REACTION&object=GLUCOSE-OXIDASE-RXN" target="_blank">MetaCyc</a> | <a href="http://www.metacyc.org/META/NEW-IMAGE?type=REACTION&object=GLUCOSE-OXIDASE-RXN" target="_blank">MetaCyc</a> | ||
</p> | </p> | ||
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<p id="UncertainParameters" style="border-bottom: 1px black solid ;font-size:25px;text-weight:bold;display:inline-block">Parameters with uncertainty</p> | <p id="UncertainParameters" style="border-bottom: 1px black solid ;font-size:25px;text-weight:bold;display:inline-block">Parameters with uncertainty</p> | ||
<p> | <p> | ||
− | + | K<sub>m</sub> | |
</p> | </p> | ||
<img class="full" src="https://static.igem.org/mediawiki/2016/e/e4/T--Manchester--GOxKmPDF.png" alt="Probability density function for the Km of Glucose Oxidase" /> | <img class="full" src="https://static.igem.org/mediawiki/2016/e/e4/T--Manchester--GOxKmPDF.png" alt="Probability density function for the Km of Glucose Oxidase" /> | ||
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</br> | </br> | ||
<p> | <p> | ||
− | + | K<sub>cat</sub> | |
</p> | </p> | ||
<img class="full" src="https://static.igem.org/mediawiki/2016/d/d0/T--Manchester--GOxKcatPDF.jpg" alt="Probability density function for the Kcat of Glucose Oxidase" /> | <img class="full" src="https://static.igem.org/mediawiki/2016/d/d0/T--Manchester--GOxKcatPDF.jpg" alt="Probability density function for the Kcat of Glucose Oxidase" /> | ||
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</br> | </br> | ||
<p> | <p> | ||
− | + | K<sub>eq</sub> | |
</p> | </p> | ||
<img class="full" src="https://static.igem.org/mediawiki/2016/9/9d/T--Manchester--GOxKeqPDF.jpg" alt="Probability density function for the Keq of Glucose Oxidase" /> | <img class="full" src="https://static.igem.org/mediawiki/2016/9/9d/T--Manchester--GOxKeqPDF.jpg" alt="Probability density function for the Keq of Glucose Oxidase" /> |
Revision as of 17:27, 19 October 2016
Glucose Oxidase Reaction
Oxidation of glucose to Glucono-δ-lactone and Hydrogen Peroxide using Glucose Oxidase (EC 1.1.3.4)
Chemical Equation
$${Glucose} + {Oxygen} \rightleftharpoons {Glucano-} \delta {-lactone} + {Hydrogen} \ {Peroxide}$$Rate Equation
$$\nu = \frac{K_{cat}[GOx] \frac{[Glucose]}{K_{m,Glucose}}\left({ 1- \frac{[Glucose]}{[H_2 O_2][{GDL}]} \frac{1}{K_{eq}}} \right)}{1+\frac{[Glucose]}{K_{m,Glucose}}+\frac{[H_2 O_2]}{K_{m,H_2 O_2}}+\frac{[H_2 O_2][GDL]}{K_{m,GDL}K_{m,H_2 O_2}}+\frac{[GLD]}{K_{m,GDL}}} $$where:
Symbol | Meaning |
---|---|
$$K_{m,A}$$ | Michaelis constant of species A |
$$K_{cat}$$ | Turnover number |
$$[A]$$ | Concentration of A |
$$ \nu$$ | Reaction Rate |
Parameter Sourcing
Kcat and Km parameters were collected from BRENDA
Keq was calculated using the Van’t Hoff equation using the Gibbs free energy sourced from MetaCyc
$$ K_{eq} = e^{\frac{-\Delta G} {RT}}$$Parameters with uncertainty
Km
Uncertainty in Km is introduced through the range of experimental parameters sourced. Properties of the raw data can be seen in the table below:
Property | Value |
---|---|
Minimum | 0.815 mM |
Maximum | 733 mM |
Mean | 43.3 mM |
Parameters Sourced | 88 |
Kcat
Uncertainty in Kcat is introduced through the range of experimental parameters sourced. Properties of the raw data can be seen in the table below:
Property | Value |
---|---|
Minimum | 0.03 s-1 |
Maximum | 2003 s-1 |
Mean | 617.3 s-1 |
Parameters Sourced | 33 |
Keq
Uncertainty in Keq is introduced using a uniform range of temperature variations (298 K ± 5 K). Properties of this can be seen in the table below:
Property | Value |
---|---|
$$- \Delta G | 140.833456736 kJ mol-1 |
Minimum Temperature | 293 K |
Maximum Temperature | 303 K |