Difference between revisions of "Team:Manchester/Description"

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   <p style="font-size:18px;text-align:left">Enzymatic colorimetric assays are used to determine the concentration of a chemical in a solution by the conversion of a chromogen substrate into a coloured product. We have introduced a plasmid expressing recombinant Alcohol Oxidase 1 (<a href="http://parts.igem.org/Part:BBa_K2092000" target="_blank">AOx</a>) from <i>Pichia pastoris</i> into <i>Escherichia coli (E.coli)</i>  BL21 (DE3) strain that will then be used in the cell-free colorimetric system. This method involves the usage of AOx to oxidise ethanol, producing hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>) as a by-product. H<sub>2</sub>O<sub>2</sub> is used as an oxidising agent by horseradish peroxidase (HRP) to convert ABTS (2,2'-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid)) to produce the colour change <sup>[1]</sup>.   
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   <p style="font-size:18px;text-align:left">Enzymatic colourimetric assays are used to determine the concentration of a chemical in a solution by the conversion of a chromogen substrate into a coloured product. We have introduced a plasmid expressing recombinant Alcohol Oxidase 1 (<a href="http://parts.igem.org/Part:BBa_K2092000" target="_blank">AOx</a>) from <i>Pichia pastoris</i> into <i>Escherichia coli (E.coli)</i>  BL21 (DE3) strain that will then be used in the cell-free colorimetric system. This method involves the usage of AOx to oxidise ethanol, producing hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>) as a by-product. H<sub>2</sub>O<sub>2</sub> is used as an oxidising agent by horseradish peroxidase (HRP) to convert ABTS (2,2'-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid)) to produce the colour change <sup>[1]</sup>.   
 
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Revision as of 22:28, 19 October 2016

Manchester iGEM 2016


Project Overview



Mechanism 1

Cell Free System


Mechanism 2 overview diagram

Enzymatic colourimetric assays are used to determine the concentration of a chemical in a solution by the conversion of a chromogen substrate into a coloured product. We have introduced a plasmid expressing recombinant Alcohol Oxidase 1 (AOx) from Pichia pastoris into Escherichia coli (E.coli) BL21 (DE3) strain that will then be used in the cell-free colorimetric system. This method involves the usage of AOx to oxidise ethanol, producing hydrogen peroxide (H2O2) as a by-product. H2O2 is used as an oxidising agent by horseradish peroxidase (HRP) to convert ABTS (2,2'-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid)) to produce the colour change [1].






Mechanism 2

Inducible Gene Switch



Mechanism 2 overview diagram

The alc gene expression system is one of the most reliable chemically inducible gene switches for use in plants and fungus. While the alc gene switch has been shown to function in a variety of dicotyledonous plants including tobacco [2], Arabidopsis [3], poplar [4], potato [5], oilseed rape [6], and tomato [7], it has not been reported to be functional in monocotyledonous plants. This system relies on the ability of AlcR, an alcohol-activated transcription factor, to bind to its target alcA promoter (PalcA). Based on this, we have engineered E. coli K-12 derivative DH5α and BL21 to induce expression of chromoproteins when AlcR binds to the native PalcA and variant of PalcA ( PalcA(var)) in the presence of ethanol [8].



References

  • Azevedo, A. M., Prazeres, D. M. F., Cabral, J. M., & Fonseca, L. P. (2005). Ethanol biosensors based on alcohol oxidase. Biosensors and Bioelectronics,21(2), 235-247.
  • Panozzo, C., Capuano, V., Fillinger, S. and Felenbok, B. (1997) ‘The zinc binuclear cluster Activator AlcR is able to bind to single sites but requires multiple repeated sites for synergistic activation of the alcA gene in Aspergillus nidulans’, Journal of Biological Chemistry, 272(36), pp. 22859–22865.