Difference between revisions of "Team:Peking/Interlab"

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                        <li><a href="https://2016.igem.org/Team:Peking/Description" >Decription</a></li>
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                  <li class="dropdown menu-8"><a class="colapse-menu1" data-toggle="dropdown" href="https://2016.igem.org/Team:Peking/Interlab" >Interlab</a>
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              <h1>Attributions<span>.</span></h1>
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            <h1>Interlab<span>.</span></h1>
              <p class="title1" style="text-align:center">The idea of this project was conceived by the team; advisors and instructors gave advices and suggestions on the implementation of this idea.</p>
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            <p class="title1" style="text-align:center">The Peking iGEM 2016 team is participating in the third year of the iGEM Interlab study along with about 100 teams.We focused on quantify expression of GFP in common, comparable or absolute units. </p>
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    <h4>Attributions</h4>
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<div id="page-content" class="row page">
      <ul>
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    <div id="primary" class="twelve columns">
          <li><a href="#members">Members'</a></li>
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          <li><a href="#acknowledgement">Acknowledgement</a></li>
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      <section>
           <li><a href="#sponsors">Sponsors</a></li>
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  <h4>Methods</h4>
 +
    <ul>
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        <li><a href="#background">Background</a></li>
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        <li><a href="#design">Design</a></li>
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        <li><a href="#materials">Materials</a></li>
 +
        <li><a href="#protocol">Protocol</a></li>
 +
    </ul>
 +
  <h4>Results</h4>
 +
  <ul>
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        <li><a href="#sequencing">Sequencing</a></li>
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        <li><a href="#data">Data</a></li>   
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                <a id="background"></a>                           
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                <h3 class="classic-title";"><span>Background</span></h3>
 +
                <p>“All of the 2016 iGEM teams are invited and encouraged to participate in the Third International InterLaboratory Measurement Study in synthetic biology.” Our team took part in this study which aimed to standardize the measurements of fluorescence in different labs. The main task was to quantify expression of GFP in common, comparable or absolute units. In our case, we measured fluorescence using plate reader.
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</p>
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                <a id="design"></a>                               
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                <h3 class="classic-title";"><span>Design</span></h3>
 +
                <p>Fluorescence is widely used as a proxy for promoter activity by expressing fluorescent proteins such as green fluorescent protein (GFP). While this is an indirect measurement, it provides a useful insight into expression levels and has the significant advantage that it can be monitored continuously without disrupting cells.
 +
</p>
 +
                <p>Fluorescence/OD600 is routinely used to give an adjustment of the relative expression per cell.</p>
 +
                <p>We aim to do this using the supplied FITC as a standard reference material. You will measure the fluorescence of your instrument using a dilution series of this reference material to construct a standard curve. We have previously performed this standard curve on our own instrument alongside a standard curve for purified GFP. Using these standard curves alongside your own standard curve for FITC it is thus possible to transform your relative measurements of fluorescence into absolute measurements of GFP molecules.</p>
 +
                <p>However, we aim to control for instrument variability, at least to some degree, by measuring a standard scattering solution of a mono-dispersed silica suspension (LUDOX). The objective is to see if a simple, single fixed-point measurement can be used as a ratiometric adjustment to provide greater uniformity in fluorescence/OD600 measurements across sites.</p> 
 
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                <a id="materials"></a>                              
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                <h3 class="classic-title";"><span>Materials and methods</span></h3>
                  <a id="members"></a>    
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                <h5>Used plasmids</h5>
                  <h3 class="classic-title";"><span>Member’s Attributions</span></h3>                      
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                <p style="margin:0 0 0 0">•  Plasmid DNA (100 pg/uL in 10uL of Buffer EB)</p>
                  <p>All the data presented on this wiki was measured, collected, and analyzed by the team members. All the plasmids directly involved in the data presented on this wiki were constructed by the team members. The idea conceiving, content planning, execution, and result analysis of human practice were all done by the team members. The following is the detailed attribution:
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                  <p>
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                o Test Device 1: J23101.B0034.E0040.B0015 in pSB1C3<br>
                  <strong>LI Cheng</strong> is the team leader of Peking iGEM 2016. He participated in conceiving the project, took charge of troubleshooting, and managed the experiments, guaranteeing the normal operation of the lab.<br/>
+
                o Test Device 2: J23106.B0034.E0040.B0015 in pSB1C3<br>
                  <strong>YANG Xiaoyu</strong> was committed to ameliorate the paired dCas9 (PC) reporter system, namely, to enhance the sensitivity and robustness. Early in the project, he was also responsible for information gathering, experiment design, and lab management<br/>
+
                o Test Device 3: J23117.B0034.E0040.B0015 in pSB1C3<br>
 +
                o Positive Control Device: I20270 in pSB1C3 Also located in Kit Plate 3, well 8P<br>
 +
                o Negative Control Device: R0040 in pSB1C3 Also located in Kit Plate 2, well 6F<br>
 +
                </p>
 +
                </div>
 +
           
  
                  <strong>BAI Ke</strong> was in charge of Human Practice and also worked in the wet lab to construct and prepare plasmids for gRNA in vitro transcription.<br/>
+
                <h5>Used strain</h5>
                  <strong>DONG Yiming</strong>
+
                <p><i>Escherichia coli</i> TOP10</p>
                  was responsible for designing and manufacturing the portable electronic device that convert optical signal into analogue electrical signal.<br/>
+
               
                  <strong>LI Yuexuan</strong> worked as the financial manager of the team. She was also responsible for plasmid construction and submission.<br/>
+
                <h5>Used material</h5>
                  <strong>YANG Changru</strong> was in charge of building <i>M.tuberculosis</i>-sensing system using Molecule Beacon. He was also engaged in the protein purification of dCas9 fusion proteins.<br/>
+
                <p>
                  <strong>ZHAO Shijun</strong> was in charge of measuring the luminescence intensity of PC reporter system. She analyzed the entire experimental data.<br/>
+
                • FITC Standard: one tube with dried down FITC for creating a FITC standard<br>
                  <strong>LV Nayun</strong> helped to complete the plasmid construction of sgRNA and was in part responsible for human practice.<br/>
+
                • LUDOX: one tube with 30% colloidal silica suspended in 1mL of water<br>
                  <strong>WANG Dingyu</strong> was in charge of the construction of CRISPR gRNA as well as RNA scaffold in the beginning. Later she was working on the purification of dCas9 fusion protein.<br/>
+
                • 1xPBS (phosphate buffered saline)<br>
                  <strong>LI Jiamian</strong> took the task of cloning dCas9-luciferase. She was also responsible for the testing of PC reporter system.<br/>
+
                • Terrific broth (at half strength: 0.5x TB) or can use LB (Luria Bertani) media as an alternative<br>
                  <strong>WEI Jingyi</strong> participated in plasmid construction, protein purification, and wiki building. She was also the designer of our PowerPoint slides.<br/>
+
                • Chloramphenicol (stock concentration 25 mg/mL dissolved in EtOH)<br>
                  <strong>WANG Yuqing</strong> was in charge of Modeling. His main task was to computationally search for the suitable guide sequences. Also, he was the lab manager for the normal operation of our lab.<br/>
+
                • 50 ml Falcon tube (or equivalent) or 250 ml shake flask for cell growth<br>
                  <strong>TENG Huaiyuan</strong>was in charge of Modeling. His main task was to computationally search for the suitable guide sequences. Also, he was the lab manager for the normal operation of our lab.<br/>
+
                • 1.5 ml eppendorf tubes for sample storage<br>
                  </p>
+
                • Ice bucket with ice<br>
              </div>
+
                • Pipettes<br>
     
+
                • 96 well plate <br>
              <div>
+
</p>
                  <a id="acknowledgement"></a>  
+
               
                    <h3 class="classic-title";"><span>Acknowledgement</span></h3>                             
+
                <h5>Used machines</h5>
                    <p>We'd like to thank all those who have helped us over the summer, without whose sincere support The Uranium Reaper Project goals would have not been achieved.
+
                <p>
  </p>
+
                • Thermo VARIOSKAN FLASH<br>
                 
+
                • MAPADA UV-3100PC SPECTROPHOTOMETER<br>
                  <h4>General support</h4>
+
                • YKKY(FM40)<br>
                  <p><strong>Prof. OUYANG Qi, Prof. LOU Chunbo, Dr. ZHANG Haoqian</strong> and other teachers helped us during our brainstorming and gave us useful suggestions.<br>
+
                • AISITE electro-heating standing-temperature cultivator<br>
                  <strong>Prof. OUYANG Qi</strong> and<strong> Prof. LIU Chunli</strong> kindly provided the laboratory to us for experiments.
+
                • HONOUR INCURATOR SHAKER<br>
                  </p>
+
               
 +
</p>
  
                  <h4>Materials support</h4>
+
                <h5>Used software</h5>
                  <p><strong>Dr. ZHANG Wenbing</strong> provided us with the plasmid of 3B(Tri-SpyCatcher within 15X linker).<br>
+
                <p>
                      <strong> Prof. ZHOU Lu</strong> provided us with Uranyl-binding Protein, also called SUP.<br>
+
                • Microsoft Excel<br>
                      <strong>Prof. LIU Chunli</strong>allowed us to use his lab to do experiments on uranyl ion. The uranyl nitrate solution and Arsenazo III was provided by Prof. LIU.<br>
+
               
                    <strong>Prof. LOU Chunbo</strong> provided us with the strain B.Subtilis and mSA, heavy metal ions binding proteins: lead-binding protein, mercury-binding protein and cadmium-binding protein.<br>
+
</p>
                    <strong>Dr. DU Pei</strong> provided the beads to us and gave us experimental guidance.<br>
+
                    <strong>BIT-China</strong> gave us the important Interlab kit.
+
                  </p>
+
  
                  <h4>Experiment equipment support</h4>
+
                <h5>Used methods</h5>
                  <p><strong>Prof. OUYANG Qi</strong> lent the Akta Pure to us for all proteins purification.<br>
+
                <p style="margin:0 0 0 0">•  Calibration</p>
                      <strong>Prof. CHANG Zengyi</strong> and <strong>Dr. WANG Qingsong</strong> provided us with Scanner and helped with the setup and scan of gels.<br>
+
                <div style="padding-left:45px">
                    <strong>Prof. LIU Chunli</strong> provided us with Geiger counter to test the radiation level in and around our lab.<br>
+
                <p>
                    <strong>Core Facilities</strong>, School of Life Sciences, Peking University,assisted us with ITC.<br>
+
                o OD600 Reference point<br>
                    <strong>the State Key Laboratory of environmental simulation and pollution control</strong> provided the Aurora M90 mass spectrograph.
+
                o FITC fluorescence standard curve<br>
                  </p>
+
                o Test Device 3: J23117.B0034.E0040.B0015 in pSB1C3<br>
 +
                </p>
 +
                </div>
 +
                <p style="margin:0 0 0 0">•  Cell measurement</p>
 +
                <div style="padding-left:45px">
 +
                <p>
 +
                o Transformation<br>
 +
                o Measurements <br>
 +
                </p>
 +
                </div>
  
                  <h4>Theoretical guidance</h4>
 
                  <p> <strong>ZHANG Yihao</strong> and <strong>WANG Yu</strong>,The wiki designers of Peking iGEM 2015,gave us many suggestions about wiki building.<br>
 
                      <strong>Dr. YU Daqi</strong> of Prof. OUYANG Qi’s lab helped us a lot in experimental operating and data analysis.<br>
 
                      <strong>Prof. ZHANG Wenbing, Prof. LOU Chunbo</strong> and <strong>Dr. YU Daqi</strong> kindly helped our team with modeling of the project.<br>
 
                    <strong>Prof. OUYANG Qi, Prof. LOU Chunbo, Dr. ZHANG Haoqian</strong> and <strong>ZHANG Yihao</strong>,the instructors, coached us for the presentation.<br>
 
                      <strong>Prof. LAI Luhua</strong> and <strong>Prof. RAO Yi</strong> participated in our presentation rehearsal and gave suggestions for revisions.
 
                  </p>
 
                   
 
                  <h4>Synthetic biology course</h4>
 
                  <p>From March to June, an introductory course of synthetic biology was hold by College of Life Sciences, Peking University.During the course, the teachers, also the instructors gave us kind guidance and judged our project design. In late June, we started in the lab to start our project.
 
                  </p>
 
              </div>
 
             
 
  
              <div>  
+
</div>
                  <a id="sponsors"></a>                              
+
 
                 <h3 class="classic-title";"><span>Sponsors</span></h3>  
+
 
              <div class="row,row1">
+
                  <a id="protocol"></a>
              <ul class="footer-social">
+
                 <h3 class="classic-title";"><span>Protocols</span></h3>
                              <li class="col-md-6" id="PKU-administration" style="margin-bottom:25px;max-width:300px">
+
                  <div style="padding-left:45px">
                                  <a href="http://dean.pku.edu.cn/pkudean/index.html"><img src="https://static.igem.org/mediawiki/2016/2/2e/T--Peking--images_sponsors_PKU_Administration.png"></a>
+
                <p><a href="#">>>Calibration</a><br>
                              </li>
+
                <a href="#">>>Cell measurement</a></p>
                              <li class="col-md-6" id="PKU-SLS" style="margin-bottom:25px;max-width:300px">
+
                                  <a href="http://www.bio.pku.edu.cn/"><img src="https://static.igem.org/mediawiki/2016/7/74/T--Peking--images_sponsors_PKU_SLS.png"></a>
+
                              </li>
+
                              <li class="col-md-6" id="IMCAS" style="margin-bottom:25px;max-width:300px">
+
                                  <a href="http://english.im.cas.cn/"><img src="https://static.igem.org/mediawiki/2016/7/77/T--Peking--images_sponsors_PKU_IMCAS.png"></a>
+
                              </li>                           
+
                              <li class="col-md-6" id="PKU-CQB" style="margin-bottom:25px;max-width:300px">
+
                                  <a href="http://cqb.pku.edu.cn/en/"><img src="https://static.igem.org/mediawiki/2016/8/8e/T--Peking--images_sponsors_PKU_CQB.png"></a>
+
                              </li>
+
                              <!--<li class="col-md-6" id="BluePha" style="margin-bottom:25px; max-width:300px">
+
                                  <a href="http://www.bluepha.com/"><img src="images/PKU/Bluepha-logo.png"></a>
+
                              </li>-->
+
                              <li class="col-md-6" id="PKU-CCME" style="margin-bottom:25px;max-width:300px">
+
                                  <a href="http://www.chem.pku.edu.cn/index.php?styleid=2"><img src="https://static.igem.org/mediawiki/2016/b/ba/T--Peking--images_sponsors_PKU_CCME.png"></a>
+
                              </li>
+
                          </ul>
+
 
                 </div>
 
                 </div>
        </div>
 
                </div> <!-- row End -->
 
               
 
 
                  
 
                  
               </section> <!-- section end -->
+
 
          </div> <!-- primary end -->
+
                <h3 class="classic-title";"><span>Description</span></h3>
      </div> <!-- page-content End-->
+
                <p>Plasmids containing promoters and GFP were taken from The 2016 DNA Distribution Kit and all devices were transformed into E.coli. Fluorescence of colonies was checked up under UV light. </p>
    </div> <!-- Content End-->
+
                <p>5 ml of liquid LB-M medium with chloramphenicol were inoculated with two chosen colonies of each device. Liquid cultures were incubated for 16~18 hours in HONOUR INCURATOR SHAKER placed in incubator. OD of these cultures was measured by MAPADA UV-3100PC SPECTROPHOTOMETER and diluted to 0.02. Fluorescence of biological and also technical replicates was measured using Thermo VARIOSKAN FLASH following our protocol.
 +
                </p>
 +
 
 +
                <h3 class="classic-title";"><span>Results</span></h3>
 +
                  <a  id="sequencing"></a>
 +
                <h5>Sequencing</h5>
 +
                <p> • Device 1: J23101+I13504<br>
 +
                    • Device 2: J23106+I13504<br>
 +
                    • Device 3: J23117+I13504<br>
 +
                    • Positive Control Device: I20270 in pSB1C3<br>
 +
                    • Negative Control Device: R0040 in pSB1C3 </p>
 +
<p>
 +
>BBa_J23101 Part-only sequence (35 bp)<br>
 +
    <span style="padding-left:45px">Tttacagctagctcagtcctaggtattatgctagc</span></p><p>
 +
>BBa_J23106 Part-only sequence (35 bp)<br>
 +
    <span style="padding-left:45px">Tttacggctagctcagtcctaggtatagtgctagc</span></p><p>
 +
>BBa_J23117 Part-only sequence (35 bp)<br>
 +
    <span style="padding-left:45px">Ttgacagctagctcagtcctagggattgtgctagc</span></p><p>
 +
>BBa_I13504 Part-only sequence (875 bp)<br>
 +
    <span style="padding-left:45px">Aaagaggagaaatactagatgcgtaaaggagaagaacttttcactggagttgtcccaattcttgttgaattagatggtgatgttaatgggcacaaattttctgtcagtggagagggtgaaggtgatgcaacatacggaaaacttacccttaaatttatttgcactactggaaaactacctgttccatggccaacacttgtcactactttcggttatggtgttcaatgctttgcgagatacccagatcatatgaaacagcatgactttttcaagagtgccatgcccgaaggttatgtacaggaaagaactatatttttcaaagatgacgggaactacaagacacgtgctgaagtcaagtttgaaggtgatacccttgttaatagaatcgagttaaaaggtattgattttaaagaagatggaaacattcttggacacaaattggaatacaactataactcacacaatgtatacatcatggcagacaaacaaaagaatggaatcaaagttaacttcaaaattagacacaacattgaagatggaagcgttcaactagcagaccattatcaacaaaatactccaattggcgatggccctgtccttttaccagacaaccattacctgtccacacaatctgccctttcgaaagatcccaacgaaaagagagaccacatggtccttcttgagtttgtaacagctgctgggattacacatggcatggatgaactatacaaataataatactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata</span></p><p>
 +
>BBa_I20270 Part-only sequence (919 bp)<br>
 +
    <span style="padding-left:45px">Ttgatggctagctcagtcctaggtacaatgctagctactagagtcacacaggaaagtactagatgcgtaaaggagaagaacttttcactggagttgtcccaattcttgttgaattagatggtgatgttaatgggcacaaattttctgtcagtggagagggtgaaggtgatgcaacatacggaaaacttacccttaaatttatttgcactactggaaaactacctgttccatggccaacacttgtcactactttcggttatggtgttcaatgctttgcgagatacccagatcatatgaaacagcatgactttttcaagagtgccatgcccgaaggttatgtacaggaaagaactatatttttcaaagatgacgggaactacaagacacgtgctgaagtcaagtttgaaggtgatacccttgttaatagaatcgagttaaaaggtattgattttaaagaagatggaaacattcttggacacaaattggaatacaactataactcacacaatgtatacatcatggcagacaaacaaaagaatggaatcaaagttaacttcaaaattagacacaacattgaagatggaagcgttcaactagcagaccattatcaacaaaatactccaattggcgatggccctgtccttttaccagacaaccattacctgtccacacaatctgccctttcgaaagatcccaacgaaaagagagaccacatggtccttcttgagtttgtaacagctgctgggattacacatggcatggatgaactatacaaataataatactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata</span></p><p>
 +
>BBa_R0040 Part-only sequence (54 bp)<br>
 +
    <span style="padding-left:45px">tccctatcagtgatagagattgacatccctatcagtgatagagatactgagcac</span>
 +
</p></p>
 +
                 
 +
                  <a  id="data"></a>
 +
                  <h5>Data</h5>
 +
                  <p><b>2.1 OD600 Reference Point</b></p>
 +
                  <p><b>2.2 FITC Standard Curve</b></p>
 +
                    <p><b>2.3 Normalisation</b></p>
 +
                    <p><b>2.4 Cell Measurement</b></p>
 +
               
 +
 
 +
                  <h5>Discussion</h5>
 +
                  <p>It is noticeable that the promoter of the Device 1 is strongest followed by the promoter of the Device 2 and Device 3.</p>
 +
 
 +
                  <h3 class="classic-title";"><span>Appendix</span></h3>
 +
                  <p>Individuals responsible for conducting InterLab study
 +
• Dong Yiming measured the devices.
 +
• Li Cheng processed the data.
 +
                  </p>
 +
       
 +
 
 +
 
 +
</div>
 +
              </div> <!-- row End -->
 +
             
 +
                
 +
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 +
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Revision as of 11:38, 30 September 2016

Standard

Interlab.

The Peking iGEM 2016 team is participating in the third year of the iGEM Interlab study along with about 100 teams.We focused on quantify expression of GFP in common, comparable or absolute units.

Background

“All of the 2016 iGEM teams are invited and encouraged to participate in the Third International InterLaboratory Measurement Study in synthetic biology.” Our team took part in this study which aimed to standardize the measurements of fluorescence in different labs. The main task was to quantify expression of GFP in common, comparable or absolute units. In our case, we measured fluorescence using plate reader.

Design

Fluorescence is widely used as a proxy for promoter activity by expressing fluorescent proteins such as green fluorescent protein (GFP). While this is an indirect measurement, it provides a useful insight into expression levels and has the significant advantage that it can be monitored continuously without disrupting cells.

Fluorescence/OD600 is routinely used to give an adjustment of the relative expression per cell.

We aim to do this using the supplied FITC as a standard reference material. You will measure the fluorescence of your instrument using a dilution series of this reference material to construct a standard curve. We have previously performed this standard curve on our own instrument alongside a standard curve for purified GFP. Using these standard curves alongside your own standard curve for FITC it is thus possible to transform your relative measurements of fluorescence into absolute measurements of GFP molecules.

However, we aim to control for instrument variability, at least to some degree, by measuring a standard scattering solution of a mono-dispersed silica suspension (LUDOX). The objective is to see if a simple, single fixed-point measurement can be used as a ratiometric adjustment to provide greater uniformity in fluorescence/OD600 measurements across sites.

Materials and methods

Used plasmids

• Plasmid DNA (100 pg/uL in 10uL of Buffer EB)

o Test Device 1: J23101.B0034.E0040.B0015 in pSB1C3
o Test Device 2: J23106.B0034.E0040.B0015 in pSB1C3
o Test Device 3: J23117.B0034.E0040.B0015 in pSB1C3
o Positive Control Device: I20270 in pSB1C3 Also located in Kit Plate 3, well 8P
o Negative Control Device: R0040 in pSB1C3 Also located in Kit Plate 2, well 6F

Used strain

Escherichia coli TOP10

Used material

• FITC Standard: one tube with dried down FITC for creating a FITC standard
• LUDOX: one tube with 30% colloidal silica suspended in 1mL of water
• 1xPBS (phosphate buffered saline)
• Terrific broth (at half strength: 0.5x TB) or can use LB (Luria Bertani) media as an alternative
• Chloramphenicol (stock concentration 25 mg/mL dissolved in EtOH)
• 50 ml Falcon tube (or equivalent) or 250 ml shake flask for cell growth
• 1.5 ml eppendorf tubes for sample storage
• Ice bucket with ice
• Pipettes
• 96 well plate

Used machines

• Thermo VARIOSKAN FLASH
• MAPADA UV-3100PC SPECTROPHOTOMETER
• YKKY(FM40)
• AISITE electro-heating standing-temperature cultivator
• HONOUR INCURATOR SHAKER

Used software

• Microsoft Excel

Used methods

• Calibration

o OD600 Reference point
o FITC fluorescence standard curve
o Test Device 3: J23117.B0034.E0040.B0015 in pSB1C3

• Cell measurement

o Transformation
o Measurements

Protocols

Description

Plasmids containing promoters and GFP were taken from The 2016 DNA Distribution Kit and all devices were transformed into E.coli. Fluorescence of colonies was checked up under UV light.

5 ml of liquid LB-M medium with chloramphenicol were inoculated with two chosen colonies of each device. Liquid cultures were incubated for 16~18 hours in HONOUR INCURATOR SHAKER placed in incubator. OD of these cultures was measured by MAPADA UV-3100PC SPECTROPHOTOMETER and diluted to 0.02. Fluorescence of biological and also technical replicates was measured using Thermo VARIOSKAN FLASH following our protocol.

Results

Sequencing

• Device 1: J23101+I13504
• Device 2: J23106+I13504
• Device 3: J23117+I13504
• Positive Control Device: I20270 in pSB1C3
• Negative Control Device: R0040 in pSB1C3

>BBa_J23101 Part-only sequence (35 bp)
Tttacagctagctcagtcctaggtattatgctagc

>BBa_J23106 Part-only sequence (35 bp)
Tttacggctagctcagtcctaggtatagtgctagc

>BBa_J23117 Part-only sequence (35 bp)
Ttgacagctagctcagtcctagggattgtgctagc

>BBa_I13504 Part-only sequence (875 bp)
Aaagaggagaaatactagatgcgtaaaggagaagaacttttcactggagttgtcccaattcttgttgaattagatggtgatgttaatgggcacaaattttctgtcagtggagagggtgaaggtgatgcaacatacggaaaacttacccttaaatttatttgcactactggaaaactacctgttccatggccaacacttgtcactactttcggttatggtgttcaatgctttgcgagatacccagatcatatgaaacagcatgactttttcaagagtgccatgcccgaaggttatgtacaggaaagaactatatttttcaaagatgacgggaactacaagacacgtgctgaagtcaagtttgaaggtgatacccttgttaatagaatcgagttaaaaggtattgattttaaagaagatggaaacattcttggacacaaattggaatacaactataactcacacaatgtatacatcatggcagacaaacaaaagaatggaatcaaagttaacttcaaaattagacacaacattgaagatggaagcgttcaactagcagaccattatcaacaaaatactccaattggcgatggccctgtccttttaccagacaaccattacctgtccacacaatctgccctttcgaaagatcccaacgaaaagagagaccacatggtccttcttgagtttgtaacagctgctgggattacacatggcatggatgaactatacaaataataatactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata

>BBa_I20270 Part-only sequence (919 bp)
Ttgatggctagctcagtcctaggtacaatgctagctactagagtcacacaggaaagtactagatgcgtaaaggagaagaacttttcactggagttgtcccaattcttgttgaattagatggtgatgttaatgggcacaaattttctgtcagtggagagggtgaaggtgatgcaacatacggaaaacttacccttaaatttatttgcactactggaaaactacctgttccatggccaacacttgtcactactttcggttatggtgttcaatgctttgcgagatacccagatcatatgaaacagcatgactttttcaagagtgccatgcccgaaggttatgtacaggaaagaactatatttttcaaagatgacgggaactacaagacacgtgctgaagtcaagtttgaaggtgatacccttgttaatagaatcgagttaaaaggtattgattttaaagaagatggaaacattcttggacacaaattggaatacaactataactcacacaatgtatacatcatggcagacaaacaaaagaatggaatcaaagttaacttcaaaattagacacaacattgaagatggaagcgttcaactagcagaccattatcaacaaaatactccaattggcgatggccctgtccttttaccagacaaccattacctgtccacacaatctgccctttcgaaagatcccaacgaaaagagagaccacatggtccttcttgagtttgtaacagctgctgggattacacatggcatggatgaactatacaaataataatactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata

>BBa_R0040 Part-only sequence (54 bp)
tccctatcagtgatagagattgacatccctatcagtgatagagatactgagcac

Data

2.1 OD600 Reference Point

2.2 FITC Standard Curve

2.3 Normalisation

2.4 Cell Measurement

Discussion

It is noticeable that the promoter of the Device 1 is strongest followed by the promoter of the Device 2 and Device 3.

Appendix

Individuals responsible for conducting InterLab study • Dong Yiming measured the devices. • Li Cheng processed the data.