Difference between revisions of "Team:Paris Saclay/Notebook/October/1"

(Created page with "{{Team:Paris_Saclay/notebook_header}} =Saturday 1<sup>st</sup> October= ==Lab work== ===Visualization=== ====Cloning of FRB - GFP 11 (pPS16_019) in FKBP - GFP 10 - pSB1C3 (p...")
 
(Cloning of FRB - GFP 11 (pPS16_019) in FKBP - GFP 10 - pSB1C3 (pPS16_018) by digestion-ligation)
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GEL
 
GEL
  
The digestion products were cleaned up from the gel by using the NucleoSpin Gel and PCR Clean-up kit [[Team:Paris_Saclay/Experiments#Purification|protocol]].  
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The digestion products were cleaned up from the gel by using the NucleoSpin Gel and PCR Clean-up kit [[Team:Paris_Saclay/Experiments#Purification|protocol]].
  
 
====Cloning of GFP 1.9 from pUC19 (pPS16_009) in pSB1C3 by digestion-ligation====
 
====Cloning of GFP 1.9 from pUC19 (pPS16_009) in pSB1C3 by digestion-ligation====

Revision as of 18:01, 2 October 2016

Saturday 1st October

Lab work

Visualization

Cloning of FRB - GFP 11 (pPS16_019) in FKBP - GFP 10 - pSB1C3 (pPS16_018) by digestion-ligation

By Maxence & Victor

For that purpose, FRB - GFP 11 (pPS16_019) clone 4 was cut by restriction enzymes XbaI & PstI as following:

  • 10 µL of FRB - GFP 11 (pPS16_019) clone 4
  • 2 µL of buffer FD
  • 1 µL of restriction enzyme XbaI
  • 1 µL of restriction enzyme PstI
  • 6 µL of water

And FKBP - GFP 10 - pSB1C3 (pPS16_018) clone 6 was cut by restriction enzymes SpeI & PstI as following:

  • 10 µL of FKBP - GFP 10 - pSB1C3 (pPS16_018) clone 6
  • 2 µL of buffer FD
  • 1 µL of restriction enzyme SpeI
  • 1 µL of restriction enzyme PstI
  • 6 µL of water

The mix were incubated for 20 minutes at 37°C. Then, 20 µL of each digestion products and 5 µL of DNA ladder were placed in wells and migrated at 100V during 30 min.

Migration products expected were :

Migration products Expected band size (bp)
Template digested (pPS16_019 treated by XbaI & PstI) 727
Vector digested (pPS16_018 treated by SpeI & PstI) 2784

GEL

The digestion products were cleaned up from the gel by using the NucleoSpin Gel and PCR Clean-up kit protocol.

Cloning of GFP 1.9 from pUC19 (pPS16_009) in pSB1C3 by digestion-ligation

By Maxence & Victor

For that purpose, GFP 1.9 PCR product from the 9th September was cut by restriction enzymes PstI & XbaI as following:

  • 5 µL of GFP 1.9 PCR product from the 9th September
  • 2 µL of buffer FD
  • 1 µL of restriction enzyme PstI
  • 1 µL of restriction enzyme XbaI
  • 11 µL of water

Furthermore, Bba plasmid (in order to have pSB1C3) was cut by restriction enzymes PstI & XbaI as following:

  • 10 µL of Bba plasmid
  • 2 µL of buffer FD
  • 1 µL of restriction enzyme EcoRI
  • 1 µL of restriction enzyme XbaI
  • 6 µL of water

The mix were incubated for 30 minutes hour at 37°C. Then, 2 µL of each digestion products and 5 µL of DNA ladder were placed in wells and migrated at 100V during 30 min.

Migration products expected were :

Migration products Expected band size (bp)
Template digested (GFP 1.9 PCR product treated by PstI & XbaI) 900
Vector digested (Bba treated by PstI & XbaI) 845

GEL

The digestion products were cleaned up by using the NucleoSpin Gel and PCR Clean-up kit protocol.