Difference between revisions of "Team:Paris Saclay/Notebook/August/8"
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{{Team:Paris_Saclay/notebook_header}} | {{Team:Paris_Saclay/notebook_header}} | ||
=Monday 8<sup>th</sup> August= | =Monday 8<sup>th</sup> August= | ||
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===Visualization=== | ===Visualization=== | ||
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''By Caroline'' | ''By Caroline'' | ||
| − | The PCR was carried out following the usual [[Team:Paris_Saclay/Experiments#phusion|protocol]] adapted to 50µL and with a TM at 72°C. The specific [[Team:Paris_Saclay/Experiments#primers|primers]] for each parts were | + | The PCR was carried out following the usual [[Team:Paris_Saclay/Experiments#phusion|protocol]] adapted to 50µL and with a TM at 72°C. The specific [[Team:Paris_Saclay/Experiments#primers|primers]] for each parts were used. The products were put for migration on a 0.8%agarose gel with BET. No amplification were observed: that was probably due to the fact that the plasmid extractions made on the 3/08/2016 were eluted with water which is not working with this plasmid extraction kit. |
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| + | [[File:T--Paris_Saclay--160808_gel.JPG|400px|thumb|right|Result of the PCR]] | ||
==== Liquid cultures of bacteria containing plasmid to extract ==== | ==== Liquid cultures of bacteria containing plasmid to extract ==== | ||
''By Caroline, Charlène, Terrence'' | ''By Caroline, Charlène, Terrence'' | ||
| − | In order to redo the extractions that did not | + | In order to redo the plasmid extractions that did not work due to the use of water instead of the elution buffer. To do it, 5mL of LB were mixed with Ampicillin at 50µg/mL and put at 37°C and at 180rpm overnight. |
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==== Migration of DNA plasmid extracted ==== | ==== Migration of DNA plasmid extracted ==== | ||
''By Terrence, Alice, Laetitia'' | ''By Terrence, Alice, Laetitia'' | ||
| − | Plasmid sent to sequencing were migrated again on a gel in order to check their size. | + | Plasmid sent to sequencing were migrated again on a gel in order to check their size. A lot of depositions have no DNA which would be explained by the use of water instead of the elution buffer of the plasmid extraction kit. |
[[File:T--Paris_Saclay--160728_visualization_migration_extraction.jpeg|600px|thumb|right|Migration of pPS16_001 (Gblock 1.1), pPS16_002 (Gblock 1.2), pPS16_005, pPS16_006, pUC 19]] | [[File:T--Paris_Saclay--160728_visualization_migration_extraction.jpeg|600px|thumb|right|Migration of pPS16_001 (Gblock 1.1), pPS16_002 (Gblock 1.2), pPS16_005, pPS16_006, pUC 19]] | ||
| − | [[File:T--Paris_Saclay--160810_visualization_migration_extraction2.jpeg| | + | [[File:T--Paris_Saclay--160810_visualization_migration_extraction2.jpeg|300px|thumb|right|Migration]] |
{{Team:Paris_Saclay/notebook_footer}} | {{Team:Paris_Saclay/notebook_footer}} | ||
Latest revision as of 16:24, 9 October 2016
