Difference between revisions of "Team:Paris Saclay/Notebook/August/12"

(Dreamtaq PCR on puc19, detection, FRB, FKBP, SgRnaST, SgRnaNM and 1.2)
(Lab work)
 
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= Friday 12<sup>th</sup> August=
 
= Friday 12<sup>th</sup> August=
==Lab work==
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===Visualization===
 
===Visualization===
====PCR of pPS16_009====
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====PCR of pPS16_020====
 
''By Léa''
 
''By Léa''
  
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Primers: IPS83 ans IPS84
 
Primers: IPS83 ans IPS84
  
====Extraction of puc19====
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[[File:T--Paris_Saclay--120826_visualization_PCRGFP.jpg|400px|thumb|right|Electrophoresis of PCR products, using primers IPS 83 and IPS 84 on pPS16_016.]]
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====Extraction of pUC19====
 
''By Charlène''
 
''By Charlène''
  
Clones 1 and 2 of puc19 were extracted with the [[Team:Paris_Saclay/Experiments#InvitrogenPlasmidExtraction|Plasmid MiniPrep kit]].
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Clones 1 and 2 of pUC19 were extracted with the [[Team:Paris_Saclay/Experiments#InvitrogenPlasmidExtraction|Plasmid MiniPrep kit]].
  
They were fast digested with EcoRI : 3µL of plasmid + 1µL of FD buffer + 0.5µL of FD EcoRI + 5.5µL of water, 15 minutes at 37°C.
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They were fast digested with EcoRI : 3µL of plasmid + 1µL of FD buffer + 0.5µL of FD EcoRI + 5.5µL of water, 15 minutes at 37°C.
  
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[[File:T--Paris_Saclay--20160812_puc19_digestion.JPG|500px|thumb|right|pUC19 clones 1 and 2 digested by EcoRI]]
  
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Just clone 1 is at the good size so we will have to use it and not clone 2.
  
 
====Dreamtaq PCR on puc19, detection, FRB, FKBP, SgRNAst, SgRNAnm and gBlock 1.2====
 
====Dreamtaq PCR on puc19, detection, FRB, FKBP, SgRNAst, SgRNAnm and gBlock 1.2====
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We made 6 clones of each colonie except for Puc19 where we made 1 negative control.
 
We made 6 clones of each colonie except for Puc19 where we made 1 negative control.
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 +
Result of the PCR : there is no band at the expected size for all the screened clones so the transformations of the gblock do not seem to have worked.
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[[File:T--Paris Saclay--1-2-FRB 15 08.jpeg|400px|thumb|right|1.2 and FRB]]
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[[File:T--Paris_Saclay--détection-ST_15_08.JPG|400px|thumb|right|Detection and ST]]
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[[File:T--Paris_Saclay--NM-FKBP_15_08.JPG|400px|thumb|right|puc19, NM and FKBP]]
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[[File:T--Paris_Saclay--puc19-FKBP_15_08.JPG|400px|thumb|right|FKBP]]
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Latest revision as of 16:39, 9 October 2016

Friday 12th August

Visualization

PCR of pPS16_020

By Léa

A Dreamtaq PCR was performed on pPS16_009 using the usual protocol. Primers: IPS83 ans IPS84

Electrophoresis of PCR products, using primers IPS 83 and IPS 84 on pPS16_016.

Extraction of pUC19

By Charlène

Clones 1 and 2 of pUC19 were extracted with the Plasmid MiniPrep kit.

They were fast digested with EcoRI : 3µL of plasmid + 1µL of FD buffer + 0.5µL of FD EcoRI + 5.5µL of water, 15 minutes at 37°C.

pUC19 clones 1 and 2 digested by EcoRI


Just clone 1 is at the good size so we will have to use it and not clone 2.

Dreamtaq PCR on puc19, detection, FRB, FKBP, SgRNAst, SgRNAnm and gBlock 1.2

By Naiane, Mahnaz and Terrence

A Dreamtaq PCR was performed on puc19, detection, FRB, FKBP, SgRNAst, SgRNAnm and gBlock 1.2 using the usual protocol with these volumes :

Components Volume
10X DreamTaq Green Buffer 2.5µL
dNTP (10mM) 1µL
Primers mix (10µM each) 1µL
DreamTaq DNA polymerase 0.25µL
Nuclease-free water up to 25µL
Total volume 25µL

We made 6 clones of each colonie except for Puc19 where we made 1 negative control.

Result of the PCR : there is no band at the expected size for all the screened clones so the transformations of the gblock do not seem to have worked.

1.2 and FRB
Detection and ST


puc19, NM and FKBP


FKBP