Difference between revisions of "Team:Ionis Paris/Hardware"

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<p>In order to demonstrate our project into real-world conditions, we developed a custom drone able to safely transport our organisms into the chosen areas. We were able to use a 3D printer at La Paillasse that allowed us to print most of the drone parts ourselves (like the chassis and feet)
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<p>In order to demonstrate our project into real-world conditions, we developed a custom drone able to safely transport our organisms into the chosen areas. We used a 3D printer at La Paillasse to print most of the drone parts ourselves (chassis and feet). The files used to print the drone are available <a href = "https://static.igem.org/mediawiki/2016/0/0b/T--Ionis_Paris--QuantiflyDroneModels.zip"><font color="DeepPink">here</font></a>. The drone was designed in order to safely contain genetically modified organisms using a tube that we also designed and <a href = "https://static.igem.org/mediawiki/2016/1/17/T--Ionis_Paris--QuantiflyTubeModels.zip"><font color="DeepPink"> printed</font></a>. The tube, working as an airlock, allowed air sampling without risking bacterial dissemination in the external environment. (Please note that <a href ="https://2016.igem.org/Team:Ionis_Paris/Demonstrate"><font color="DeepPink"> containment tests</font></a> have only been conducted inside the lab).</p>
The drone was designed in order to safely contain genetically modified, using a tube we designed as well. The tube, working a an airlock, allowed us to sample some air without letting any bacteria out in the external environment. (Please note that no containment test have been conducted outside the lab).</p>
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<p> The drone is a quadricopter with a 980kv power.It has 4 ESC (motor speed control systems) of 30A, and is equipped with a flight control system and a distribution circuit.<br/>
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<p> The drone is a quadricopter with a 980kv power. It has 4 ESC (motor speed control systems) of 30A and is equipped with a flight control system as well as a distribution circuit. It runs on a 3S battery (5Ah).<br/>
It runs on a 3S battery (5Ah).<br/>
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We designed it to hold four tubes in the prototype version. In order to open those tubes, the drone is equipped with servomotors able to lift the lid of the tubes. The drone has a 500g payload capacity which is more than needed and a theoretical autonomy of 8 minutes. The extra payload will be used to add other modules to the drone (such as a bleach bottle as explained below).</p>
In order to allow the opening of our tubes, the drone is equipped with servomotors able to lift the lid of the tubes.
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The drone has a 500g payload capacity, which is more than what we should need, and a theoretical 8 minutes autonomy. The extra payload will be used to add extra modules to the drone (such as a bleach bottle, see below), and the 8 minutes autonomy is more than enough to perform our measurement series.</p>
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<p>We thought about this drone as a prototype, the first step towards the application of our project in the outside world. Its main objectives were to fly, to carry the bacteria on site, and to retrieve the bacteria exposed to pollutants through a cartridge system. However, we thought about a few improvements for it  as the project went on:
 
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                 <figure>
 
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                   <img src="https://static.igem.org/mediawiki/2016/e/ed/IONIS_IGEM_drone.jpg" alt="">
 
                   <img src="https://static.igem.org/mediawiki/2016/e/ed/IONIS_IGEM_drone.jpg" alt="">
                   <figcaption><p><b>On the left :</b> Our drone's chassis.<b>On the right:</b> the finalversion of our drone's design.</p></figcaption>
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                   <figcaption><p><i>Figure 1: <b>On the left:</b> Our drone's chassis. <b>On the right:</b> The final version of our drone </p></i></figcaption>
 
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<p> We thought about this drone as a prototype, the first step towards the application of our project in the outside world. Its main objectives were to fly, to carry the bacteria on site, and to retrieve the bacteria exposed to pollutants through a cartridge system. However, we thought about a few improvements for it  as the project went on:
+
 
 +
<p>Even if this drone is just a prototype, it is the first step towards field applications of our project. Our main objective was to realize a flying drone able to carry the bacteria on-site without dissemination and to sample external air. We did reach this objective: see our <a href ="https://2016.igem.org/Team:Ionis_Paris/Demonstrate"><font color="DeepPink"> drone flying</font></a>.
 
</p>
 
</p>
                                            <li><p>There already is a very simple safety mechanism on the drone: if it goes out of the controller’s range, it lands. However, we thought of another one: sticking a small bottle of bleach under the drone. In the event of a crash, the bottle would break and spill the bleach everywhere, killing any bacteria that might have leaked out of a broken tube.</li></p>
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<p>There is already a very simple safety mechanism on the drone. If it goes out of the controller’s range, it will land. However, this will not avoid bacterial dissemination if the drone crashed. This is why a second safety mechanism had to be set up. <br />
                                            <li><p>We also investigated about how we could turn our drone and give it on-field analysis abilities. It appears that the required technology is out of our reach within the frame of the iGEM competition, but that might be possible by using a microfluidic circuit and a small photosensitive cell. The microfluidic circuit would allow us to manipulate the cells one by one, and the cell could be quickly analyzed by the photosensitive cell. This even has two interesting side-effects: the measurement time should be way quicker, due to the single cell exposed, and the drone would be able to perform way more measurements in a single flight.</li></p>
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Our solution to this problem is a small bottle of bleach attached under the drone. In the event of a crash, the bottle would break and spill the bleach, killing any bacteria that might have leaked out of a broken tube.<br/>
                                            <li><p>During the project, we thought about coding a software that would allow us to control our drone remotely, through a computer. The idea would be that a GPS-based software could lead to automatic mapping and to a more efficient flight planning. However, we contacted some professionals about this (Edouard GUILHOT, from Civic Drone), and they showed us how such a software was coded. It appeared way more complex than what we originally thought, and it involved some extra electronic components that we did not plan on adding to the drone. We therefore had to drop the idea, and stick to a drone manned only through a controller.</li></p>                     
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We proposed some improvements to this prototype:</p>
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 +
<li><p> <u>Investigation of drone's on-field bioluminescence analysis abilities:</u>  it appears that the required technology is out of our reach within the frame of the iGEM competition. It might be possible by using a microfluidic circuit and a small photosensitive cell. The microfluidic circuit would allow us to manipulate the cells one by one to make them pass in front of a photosensitive cell. However, using this technology, the time before bioluminescence assay must be reduced.</li></p>
 +
 
 +
<li><p><u>Drone telecontrol:</u>  We thought about coding a software that would allow us to telecontrol our drone. A GPS-based software will allow automatic mapping and a more efficient flight planning. However, when we discussed about the software code with Edouard GUILHOT, director of Civic Drone, it appeared more complex than expected. It would also involve extra electronic components.</li></p>                     
 
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             <img src="https://static.igem.org/mediawiki/2016/e/e2/IONIS_IGEM_drone_pierre.jpg" alt="">
 
             <img src="https://static.igem.org/mediawiki/2016/e/e2/IONIS_IGEM_drone_pierre.jpg" alt="">
         <figcaption><p><b>Our drone in the making</b></p></figcaption>
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         <figcaption><p><i> Figure 2: Drone creation by Pierre Couderc</i></p></figcaption>
  
 
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             <h5 class="smallHd">Containment tubes</h5>
 
             <h5 class="smallHd">Containment tubes</h5>
             <h2 class="secHd">Chosing the design and the materials</h2>
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             <h2 class="secHd"> Tube design and materials</h2>
  
 
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<p>The tube itself was one of our major challenges: as we are working with living modified organisms, it has to be perfectly safe in terms of containment: Not a single organism must able to get out in the open environment. Therefore, we designed a sampling tube able to sample external air and expose bacteria to it while remaining perfectly hermetic. The tube can then be opened in the lab for result analysis. Our tubes were 3D printed, and the drone was designed to hold up to four tubes for our prototype version.</p>
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<p><b>The bacteria containing tube was one of our challenges. </b> As we are working with living modified organisms, it had to be perfectly closed to avoid any dissemination. Therefore, we designed a tube able to sample external air and expose bacteria to it while remaining perfectly hermetic.</p>
<p>The basic principle of the tube itself is the same as an airlock: there is a compartment between the outside environment and the inside of the tube, and it acts as an interface: the outside and inside never mix. Therefore, air can be sampled when the tube is opened by little servomotors placed on the drone, and when it closes, air goes into the inner part ofthe tube, therefore making contact with the bacteria who are exposed to the pollutant and will start producing luciferase.</p>
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<p>We believe that the tube we designed is a very useful tool for applied synthetic biology that everyone can use, and will do our best to improve it within the iGEM Competition.</p>
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<p><b>The tube functions as an airlock. </b> There is a compartment between the outside environment and the inside of the tube that acts as an interface that does not directly allow the contact of the tube's outside with the tube's inside. At the beginning the tube is half open but the air cannot enter. Thanks to little servomotors placed on the drone, tubes can be opened to sample the air. However, at this step, the bottom of the lid still closes the tube preventing bacterial dissemination.
 +
Finally, the tube closes fully and the air goes though the interface into the inner part of the tube in which bacteria are.
 +
Exposed to the pollutant, the bacteria will start producing luciferase.</p>
 +
 
 +
<p>We believe that the tube we designed can be a very useful tool for applied synthetic biology and future team will do their best to improve it within the iGEM competition.</p> <br>
  
 
               <figure>
 
               <figure>
                 <img src="https://static.igem.org/mediawiki/2016/e/e2/IONIS_IGEM_tube.jpg" alt="">
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                 <img src="https://static.igem.org/mediawiki/2016/e/e2/IONIS_IGEM_tube.jpg" alt="">
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<figcaption><p><i>Figure 3: Tube design</p></i></figcaption>
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                 <img src="https://static.igem.org/mediawiki/2016/1/15/IONIS_IGEM_tube_making.jpg" alt="">
 
                 <img src="https://static.igem.org/mediawiki/2016/1/15/IONIS_IGEM_tube_making.jpg" alt="">
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<figcaption><p><i> Figure 4: Printing of the tube </p></i></figcaption>
 
                  
 
                  
 
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<center><video width="760" height="415" poster="https://static.igem.org/mediawiki/2015/8/83/Logo_IONIS.png" controls><source src="https://static.igem.org/mediawiki/2016/c/c5/T--Ionis_Paris--QuantiflyTubeVideo.mov" type='video/mp4'/><a href="https://www.youtube.com/watch?v=T8NRAraxPaM"><img border="0" src="https://static.igem.org/mediawiki/2015/8/83/Logo_IONIS.png" alt="Click to view on Youtube" width="760" height="415"></a>
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<p><font color ="DeepPink">Your browser either does not support HTML5 or cannot handle MediaWiki open video formats. Please consider upgrading your browser, installing the appropriate plugin or switching to a Firefox or Chrome install.</font></p></video></center>
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<p><i> Air sampling by the containment tube without bacterial dissemination </i></p>
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                                 <h4>iGEM IONIS</h4>
 
                                 <h4>iGEM IONIS</h4>
 
                                 <p> We're a group of six different schools from the IONIS Education Group. For this
 
                                 <p> We're a group of six different schools from the IONIS Education Group. For this
                                     competition we wanted to take advantages of the multiple schools and activity field
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                                     competition we wanted to take advantage of the multiple schools and fields of activity
 
                                     given by the IONIS education group to create a solid project.</p>
 
                                     given by the IONIS education group to create a solid project.</p>
 
                                 <a href="https://2016.igem.org/Team:Ionis_Paris/Team">Read More</a>
 
                                 <a href="https://2016.igem.org/Team:Ionis_Paris/Team">Read More</a>
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                                <h4>Download the app</h4>
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Latest revision as of 21:22, 19 October 2016

Hardware

Drone's conception process

In order to demonstrate our project into real-world conditions, we developed a custom drone able to safely transport our organisms into the chosen areas. We used a 3D printer at La Paillasse to print most of the drone parts ourselves (chassis and feet). The files used to print the drone are available here. The drone was designed in order to safely contain genetically modified organisms using a tube that we also designed and printed. The tube, working as an airlock, allowed air sampling without risking bacterial dissemination in the external environment. (Please note that containment tests have only been conducted inside the lab).

The drone is a quadricopter with a 980kv power. It has 4 ESC (motor speed control systems) of 30A and is equipped with a flight control system as well as a distribution circuit. It runs on a 3S battery (5Ah).
We designed it to hold four tubes in the prototype version. In order to open those tubes, the drone is equipped with servomotors able to lift the lid of the tubes. The drone has a 500g payload capacity which is more than needed and a theoretical autonomy of 8 minutes. The extra payload will be used to add other modules to the drone (such as a bleach bottle as explained below).

Figure 1: On the left: Our drone's chassis. On the right: The final version of our drone

Even if this drone is just a prototype, it is the first step towards field applications of our project. Our main objective was to realize a flying drone able to carry the bacteria on-site without dissemination and to sample external air. We did reach this objective: see our drone flying.

There is already a very simple safety mechanism on the drone. If it goes out of the controller’s range, it will land. However, this will not avoid bacterial dissemination if the drone crashed. This is why a second safety mechanism had to be set up.
Our solution to this problem is a small bottle of bleach attached under the drone. In the event of a crash, the bottle would break and spill the bleach, killing any bacteria that might have leaked out of a broken tube.
We proposed some improvements to this prototype:

  • Investigation of drone's on-field bioluminescence analysis abilities: it appears that the required technology is out of our reach within the frame of the iGEM competition. It might be possible by using a microfluidic circuit and a small photosensitive cell. The microfluidic circuit would allow us to manipulate the cells one by one to make them pass in front of a photosensitive cell. However, using this technology, the time before bioluminescence assay must be reduced.

  • Drone telecontrol: We thought about coding a software that would allow us to telecontrol our drone. A GPS-based software will allow automatic mapping and a more efficient flight planning. However, when we discussed about the software code with Edouard GUILHOT, director of Civic Drone, it appeared more complex than expected. It would also involve extra electronic components.

  • Figure 2: Drone creation by Pierre Couderc

    Containment tubes

    Tube design and materials

    The bacteria containing tube was one of our challenges. As we are working with living modified organisms, it had to be perfectly closed to avoid any dissemination. Therefore, we designed a tube able to sample external air and expose bacteria to it while remaining perfectly hermetic.

    The tube functions as an airlock. There is a compartment between the outside environment and the inside of the tube that acts as an interface that does not directly allow the contact of the tube's outside with the tube's inside. At the beginning the tube is half open but the air cannot enter. Thanks to little servomotors placed on the drone, tubes can be opened to sample the air. However, at this step, the bottom of the lid still closes the tube preventing bacterial dissemination. Finally, the tube closes fully and the air goes though the interface into the inner part of the tube in which bacteria are. Exposed to the pollutant, the bacteria will start producing luciferase.

    We believe that the tube we designed can be a very useful tool for applied synthetic biology and future team will do their best to improve it within the iGEM competition.


    Figure 3: Tube design

    Figure 4: Printing of the tube



    Air sampling by the containment tube without bacterial dissemination