Difference between revisions of "Team:Newcastle/Notebook/Diary"

 
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<html>
 
<html>
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<div class="column full_size" >
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<style>
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<a href ="https://static.igem.org/mediawiki/2016/a/a9/T--Newcastle--components_gantt.png">
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#HQ_page th
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<img alt="chart" src="https://static.igem.org/mediawiki/2016/a/a9/T--Newcastle--components_gantt.png" width="750" height="700"/>
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{
−
</a>
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background-color: #e35c5c;
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<div id="wk3">
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padding: 10px;
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<h1 id="th-july">4<sup>th</sup> July</h1>
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color: #292000;
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<p><strong><em>09:00-17:00:</em></strong></p>
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border: none;
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<ul>
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font-size: 2rem;
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<li><p>COMSOL Training Day</p></li>
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}
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</ul>
+
#HQ_page td
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<p>iGEM Week 3</p>
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{
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<h1 id="th-july-1">5<sup>th</sup> July</h1>
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color: #292000;
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<p><strong><em>09:00-13:00:</em></strong></p>
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border: none;
−
<ul>
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font-family: 'Didact Gothic';
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<li><p>Interlab Study</p></li>
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font-size: 2rem;
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</ul>
+
}
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<p><strong><em>14:00-16:00:</em></strong></p>
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<ul>
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#HQ_page table
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<li><p>COMSOL and Action Points</p></li>
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{
−
</ul>
+
    border: none;
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<p><strong><em>16:00-17:00:</em></strong></p>
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}
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<ul>
+
 
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<li><p>Seminar on “Synthetic Biology: perspectives from artificial life”</p></li>
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figcaption
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</ul>
+
{
−
<p>iGEM Week 3</p>
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    text-align: center;
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<h1 id="th-july-2">6<sup>th</sup> July</h1>
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    /* font-weight: bold; */
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<p><strong><em>09:00-09:30:</em></strong></p>
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    font-size: 1.5rem;
−
<ul>
+
    color: #292000;
−
<li><p>Checked the plate reader</p></li>
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}
−
</ul>
+
 
−
<p><strong><em>09:30-12:00:</em></strong></p>
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figure img
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<ul>
+
{
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<li><p>Action Points</p></li>
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    max-width: 100%;
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</ul>
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    transform: scale(0.9, 0.9);
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<p><strong><em>12:00-13:00:</em></strong></p>
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    display: block;
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<ul>
+
    margin-left: auto;
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<li><p>Lunch</p></li>
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    margin-right: auto;
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</ul>
+
}
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<p><strong><em>13:00-14:00:</em></strong></p>
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−
<ul>
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a, a:focus, a:hover, li > a
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<li><p>Skyped Chennai</p></li>
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{
−
</ul>
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    color: #e35c5c;
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<p><strong><em>14:00-15:00:</em></strong></p>
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}
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<ul>
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.col-md-4 a{
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<li><p>Planned for the meeting</p></li>
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    color: #e35c5c;
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</ul>
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}
−
<p><strong><em>15:00-17:00:</em></strong></p>
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.nav > li > a:focus, .nav > li > a:hover, .nav-pills > li.active > a
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<ul>
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{
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<li><p>Meeting</p></li>
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    background-color: #e35c5c;
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</ul>
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}
−
<p>iGEM Week 3</p>
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<h1 id="th-july-3">7<sup>th</sup> July</h1>
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#hq_page p
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<p><strong><em>09:30-11:00:</em></strong></p>
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{
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<ul>
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font-size: 2rem;
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<li><p>Start prep for the plasmids to be sent to DNA2.0</p></li>
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}
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</ul>
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div p, ul li, ol li
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<p><strong><em>11:00-12:00:</em></strong></p>
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{
−
<ul>
+
    color: #292000;
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<li><p>Action Points</p></li>
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}
−
</ul>
+
 
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<p><strong><em>12:00-13:00:</em></strong></p>
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ul.checked, ul.question, ul.dot
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<ul>
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{
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<li><p>Lunch</p></li>
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list-style: none;
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</ul>
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}
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<p><strong><em>13:00-14:30:</em></strong></p>
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−
<ul>
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ul.checked li, ul.question li, ul.dot li
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<li><p>Continued prepping cultures for freezing and for the plasmids to be sent to DNA2.0</p></li>
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{
−
</ul>
+
font-family: 'Didact Gothic';
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<p><strong><em>14:30-15:30:</em></strong></p>
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font-size: 16px;
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<ul>
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}
−
<li><p>Ollie and Lauren filmed for the School of Biology</p></li>
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</ul>
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ul.checked li:before {
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<p><strong><em>15:30-17:00:</em></strong></p>
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  position: absolute;
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<ul>
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  margin-left: -1.3em;
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<li><p>Action Points</p></li>
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  font-weight: bold;
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</ul>
+
 
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<p>iGEM Week 3</p>
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  content: "\2713";
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<h1 id="th-july-4">8<sup>th</sup> July</h1>
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  color: darkgreen;
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<p><strong><em>09:00-12:00:</em></strong></p>
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}
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<ul>
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<li><p>Mini prepped Plasmids to be sent to DNA2.0</p></li>
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ul.question li:before {
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</ul>
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  position: absolute;
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<p><strong><em>12:00-13:00:</em></strong></p>
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  margin-left: -1.3em;
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<ul>
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  font-weight: bold;
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<li><p>Lunch</p></li>
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−
</ul>
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  content: "?";
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<p><strong><em>13:00-14:00:</em></strong></p>
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  color: #3c0e09;
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<ul>
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}
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<li><p>Measured spectrophotometry the plasmids and packaged up for DNA2.0</p></li>
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</ul>
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ul.dot li:before {
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<p><strong><em>14:00-16:00:</em></strong></p>
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  position: absolute;
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<ul>
+
  margin-left: -1.3em;
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<li><p>Worked on the Action Points</p></li>
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  font-weight: bold;
−
</ul>
+
 
−
<p><strong><em>16:00-17:00:</em></strong></p>
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  content: "\25A0";
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<ul>
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  color: #292000;
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<li><p>Meeting with the Patrick Degenaar</p></li>
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}
−
</ul>
+
 
−
</div>
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#right-menu
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<div id="wk2">
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{
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<h1 id="th-june">27<sup>th</sup> June</h1>
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position: fixed;
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<p><strong><em>09:00-13:00:</em></strong></p>
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}
−
<ul>
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<li><p>FabLab Sunderland</p></li>
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</style>
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</ul>
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<div class="column">
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<p><strong><em>14:00-15:00:</em></strong></p>
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    <div class="row">
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<ul>
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      <div class="col-md-8">
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<li><p>Lunch</p></li>
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<br>
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</ul>
+
            <h2>Important Dates</h2>
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<p><strong><em>14:00-15:00:</em></strong></p>
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            <br><br>
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<ul>
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<p>01/05/2016 Team Registration for iGEM deadline</p>
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<li><p>Met with Andrew Filby in regards to flowcytometry</p></li>
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<p>30/06/2016 InterLab Sign-up Deadline</p>
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</ul>
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<p>01/07/2016 Project Description Deadline</p>
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<p><strong><em>15:00-16:00: </em></strong></p>
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<p>02/07/2016 <a href="https://2016.igem.org/Team:Newcastle/Collaborations">European Teams Meet Up in Paris</a></p>
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<ul>
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<p>15/07/2016 About our Lab Form Deadline</p>
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<li><p>Sourced components for the fuel cell</p></li>
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<p>15/07/2016 About our Project Form Deadline</p>
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</ul>
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<p>28/07/2016 <a href="https://2016.igem.org/Team:Newcastle/Collaborations">Scottish Teams Meet Up in Edinburgh</a></p>
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<p><strong><em>14:00-17:00: </em></strong></p>
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<p>12/08/2016 Track Selection Deadline – Foundational Advance</p>
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<ul>
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<p>12/08/2016 <a href="https://igem.org/Team.cgi">Title and Abstract Deadline</a></p>
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<li><p>Planned and completed action points</p></li>
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<p>17/08/2016 – 18/08/2016 <a href="https://2016.igem.org/Team:Newcastle/Collaborations">UK Teams Meet Up in Westminster, London</a></p>
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</ul>
+
<p>25/08/2016 <a href="https://2016.igem.org/Team:Newcastle/Collaborations">Edinburgh Undergraduate Team Visits Newcastle</a></p>
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<p>iGEM Week 2</p>
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<p>31/08/2016 Giant Jamboree Registration Deadline</p>
−
<h1 id="th-june-1">28<sup>th</sup> June</h1>
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<p>02/09/2016 <a href="https://2016.igem.org/Team:Newcastle/InterLab">InterLab Data Deadline</a></p>
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<p><strong><em>09:00-12:00:</em></strong></p>
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<p>09/09/2016 Team Rosters Deadline</p>
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<ul>
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<p>16/09/2016 <a href="https://2016.igem.org/Team:Newcastle/Notebook/Safety">Final Safety Form Deadline</a></p>
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<li><p>Made Microbial Fuel Cell</p></li>
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<p>07/10/2016 Team Banners Deadline</p>
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</ul>
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<p>14/10/2016 <a href="https://igem.org/2016_Judging_Form?id=1895">Judging Form Deadline</a></p>
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<p><strong><em>10:00-12:00: </em></strong></p>
+
<p>19/10/2016 Wiki Freeze</p>
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<ul>
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<p>21/10/2016 <a href="http://parts.igem.org/cgi/dna_transfer/batch_list.cgi?group_id=2361">Part Submission Deadline</a></p>
−
<li><p>Liquid cultures were made and then left in the fridge overnight</p></li>
+
<p>27/10/2016 – 31/10/2016 Giant Jamboree 2016 @ Hynes Convention Center, Boston, MA</p>
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</ul>
+
 
−
<p><strong><em>12:00-13:00: </em></strong></p>
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</body>
−
<ul>
+
−
<li><p>Lunch</p></li>
+
−
</ul>
+
−
<p><strong><em>13:00-17:00: </em></strong></p>
+
−
<ul>
+
−
<li><p>Breadboard designed /Light bulb construct redesigned/ Wiki design looked at etc.</p></li>
+
−
</ul>
+
−
<p>iGEM Week 2</p>
+
−
<h1 id="th-june-2">29<sup>th</sup> June</h1>
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−
<p><strong><em>09:00-13:00:</em></strong></p>
+
−
<ul>
+
−
<li><p>Planned/ Checked Fuel Cell</p></li>
+
−
</ul>
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−
<p><strong><em>13:00-15:00:</em></strong></p>
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−
<ul>
+
−
<li><p>COMSOL licences tested</p></li>
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</ul>
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<p><strong><em>14:00-15:00:</em></strong></p>
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−
<ul>
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<li><p>Incubated liquid cultures</p></li>
+
−
</ul>
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−
<p><strong><em>15:00-17:00:</em></strong></p>
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−
<ul>
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<li><p>Meeting</p></li>
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−
</ul>
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<p><strong><em>18:00-19:00:</em></strong></p>
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<ul>
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<li><p>MAKERSPACE</p></li>
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−
</ul>
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−
<p>iGEM Week 2</p>
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−
<h1 id="th-june-3">30<sup>th</sup> June</h1>
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<p><strong><em>09:00-11:00:</em></strong></p>
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−
<ul>
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<li><p>Interlab study was discussed with Tom</p></li>
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</ul>
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<p><strong><em>11:00-12:00:</em></strong></p>
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−
<ul>
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<li><p>Lightbulb design construct was run through with Jem</p></li>
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</ul>
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−
<p><strong><em>12:00-14:00 :</em></strong></p>
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−
<ul>
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<li><p>Lunch / Exchanging the Euro</p></li>
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</ul>
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<p><strong><em>14:00 - 15:00:</em></strong></p>
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<ul>
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<li><p>More cultures grown up for the interlab/ IWBDA booked and Paris tickets picked up and confirmed.</p></li>
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</ul>
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<p><strong><em>15:00 - 17:00:</em></strong></p>
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<ul>
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<li><p>Protocols started</p></li>
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</ul>
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−
<p>iGEM Week 2</p>
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−
<h1 id="st-july">1st July</h1>
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<p><strong><em>12:00-21:00:</em></strong></p>
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<p>Travelling to Paris</p>
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−
<p>iGEM Week 2</p>
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−
<h1 id="nd-july">2nd July</h1>
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<p><strong><em>09:00 - 12:00:</em></strong></p>
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<ul>
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<li><p>Exhibition Stands in Paris</p></li>
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</ul>
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<p><strong><em>12:00-14:00:</em></strong></p>
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<ul>
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<li><p>Lunch Break</p></li>
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</ul>
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<p><strong><em>14:00-15:30</em></strong></p>
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<ul>
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<li><p>Roundtable 1 - Synthetic Biology: Challenges and Risks</p>
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<ul>
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−
<li><p>François Képès - Research Director at CNRS, founding director of the Epigenomics Project an iSSB</p></li>
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−
<li><p>Héloïse Muller - PhD at Institute Pasteur</p></li>
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−
<li><p>Andrew Tolonen - Leader of Tolonen group at the Genoscope-CEA</p></li>
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−
<li><p>Christophe Genisset - Security Officer at SGDSN (French Secretariat for Defence and National Security)</p></li>
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<li><p>Alexei Grinbaum - Researcher at LARSIM, the Philosophy of Science Group at CEA-Saclay</p></li>
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−
</ul></li>
+
−
</ul>
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−
<p><strong><em>15:30-16:00:</em></strong></p>
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−
<ul>
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<li><p>Coffee Break</p></li>
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</ul>
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<p><strong><em>16:00-17:30:</em></strong></p>
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<ul>
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<li><p>Roundtable 2 - Synthetic Biology: A New Economic World</p>
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<ul>
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<li><p>Philippe Jais - Chief Executive and Scientific Officer at Eukarys</p></li>
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<li><p>Cyrille Pauthenier -President of Abolis Biotechnologies</p></li>
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−
<li><p>Samuel Juillot - CSO at Glowee (<em>In absentia - sent a PhD student in his place)</em></p></li>
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<li><p>Michael Krel - CEO at Enobraq</p></li>
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</ul></li>
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</ul>
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<p><strong><em>17:30-18:00:</em></strong></p>
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<ul>
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<li><p>Talk from Randy Rettberg about iGEM and its importance in the world</p></li>
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</ul>
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<p><strong><em>21:00-03:00:</em></strong></p>
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<ul>
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<li><p>Party!!!</p></li>
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</ul>
+
−
<p>iGEM Week 2</p>
+
−
<h1 id="rd-july">3rd July</h1>
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<p><strong><em>09:00 - 18:00:</em></strong></p>
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−
<ul>
+
−
<li><p>Site-seeing around Paris</p></li>
+
−
</ul>
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<p><strong><em>18:00 - 02:10:</em></strong></p>
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<ul>
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<li><p>Travelling Home</p></li>
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−
</ul>
+
−
</div>
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−
<div id="wk1">
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−
<h1 id="th-june">20th June</h1>
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<p><em>Half the group </em></p>
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<blockquote>
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<p><em>Kristina, Ollie and Josh</em></p>
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</blockquote>
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<ul>
+
−
<li><p>Made streak plates of all the colonies for the interlab – left to incubate over the weekend</p></li>
+
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<li><p>Made liquid cultures</p></li>
+
−
</ul>
+
−
<blockquote>
+
−
<p> </p>
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−
</blockquote>
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<p><em>Other half the group</em></p>
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−
<blockquote>
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<p><em>Jake, Emilija, Ollie, Kristina, Kerry, Rupert and Lauren</em></p>
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−
</blockquote>
+
−
<ul>
+
−
<li><p>Looked at papers</p></li>
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<li><p>Planned the week</p></li>
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<li><p>Wrote the agenda minutes</p></li>
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<li><p>Started a plan for Wiki</p></li>
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−
</ul>
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<p><em>Training</em></p>
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<p><em>Josh</em></p>
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<ul>
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<li><p>Josh was introduced to lab techniques that the rest of the team at worked on the previous week, such as using the sterile hood, fire drills and safety techniques.</p></li>
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</ul>
+
−
<p>iGEM Week 1</p>
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−
<h1 id="st-june">21st June</h1>
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<p><strong><em>09:00-11:00: </em></strong></p>
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<ul>
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<li><p>Wiki Ideas/Themes and Layout</p>
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<ul>
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<li><p>Idea for baseball themed cards for the team</p></li>
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<li><p>Old coke adverts as a colour scheme and theme</p></li>
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</ul></li>
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</ul>
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<p><strong><em>11:00 - 12:00:</em></strong></p>
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<ul>
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<li><p>Lecture in using COMSOL and MATLAB by Dana Ofiteru</p></li>
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</ul>
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<p><strong><em>12:00-13:00</em>:</strong></p>
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<ul>
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<li><p>Lunch</p></li>
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</ul>
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<p><strong><em>13:00-13:30</em>:</strong></p>
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<ul>
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<li><p>Check the streak plates</p></li>
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</ul>
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<ul>
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<li><p>Split into sub-groups to research about:</p>
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<ul>
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<li><p>Beyond the bench</p></li>
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<li><p>Light Bulb component of the breadboard</p></li>
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</ul></li>
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−
</ul>
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<p><strong><em>16:00-17:00</em>:</strong></p>
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−
<ul>
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−
<li><p>Skyped with Edinburgh</p>
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−
<ul>
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−
<li><p>Possible collaboration</p></li>
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</ul></li>
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−
</ul>
+
−
<p>iGEM Week 1</p>
+
−
<h1 id="nd-june">22nd June</h1>
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−
<p><strong><em>09:00-11:00: </em></strong></p>
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−
<p><em>Jake and Kristina</em></p>
+
−
<ul>
+
−
<li><p>Analysed the Interlab Results</p></li>
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−
</ul>
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−
<p><em>Ollie and Josh</em></p>
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−
<ul>
+
−
<li><p>Researched papers on fuel cells and components for the light bulb.</p></li>
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−
</ul>
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−
<p><em>Emilija and Lauren</em></p>
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−
<ul>
+
−
<li><p>Researched components for the light bulb</p></li>
+
−
<li><p>Tried to construct some BioBricks on Benchling</p></li>
+
−
</ul>
+
−
<p><em>Rupert</em></p>
+
−
<ul>
+
−
<li><p>Designed the Nav Bar for the Wiki</p></li>
+
−
</ul>
+
−
<p><em>Kerry</em></p>
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−
<ul>
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−
<li><p>Worked on the project description for the Wiki</p></li>
+
−
<li><p>Deadline: 1<sup>st</sup> July</p></li>
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−
</ul>
+
−
<p><strong><em>11:00 – 11:30:</em></strong></p>
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−
<p><em>Ollie and Josh</em></p>
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−
<ul>
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−
<li><p>Plated up the Positive Control from the previous day for the team to repeat the interlab study</p></li>
+
−
</ul>
+
−
<p><strong><em>12:00-13:00</em>:</strong></p>
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−
<ul>
+
−
</ul>
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−
<p><strong><em>13:00-14:30</em>:</strong></p>
+
−
<ul>
+
−
<li><p>Met with Professor Ian Head, Dr Ed Milner, Paniz Izadi from the School of Civil Engineering and Geosciences to discuss microbial fuel cells</p></li>
+
−
</ul>
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−
<p><strong><em>14:00 - 15:00</em>:</strong></p>
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−
<ul>
+
−
<li><p>The Light sub-group met with supervisors to design the Killer BioBrick</p></li>
+
−
</ul>
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−
<p><strong><em>15:00-17:00</em>:</strong></p>
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−
<ul>
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−
<li><p>Meeting with supervisors (See Agenda and Minutes for the 22<sup>nd</sup> June)</p></li>
+
−
</ul>
+
−
<p>iGEM Week 1</p>
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−
<h1 id="rd-june">23rd June</h1>
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−
<p><strong><em>09:00-11:00:</em></strong></p>
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−
<ul>
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−
<li><p>Finalised Killer BioBrick construct</p></li>
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−
</ul>
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−
<p><strong><em>11:00-12:00:</em></strong></p>
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−
<ul>
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−
<li><p>Modelling Lecture</p></li>
+
−
</ul>
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−
<p><strong><em>12:00 - 12:30:</em></strong></p>
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−
<ul>
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−
<li><p>Lunch</p></li>
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−
</ul>
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−
<p><strong><em>12:30-14:00:</em></strong></p>
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−
<ul>
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−
<li><p>BioNetLab Training in modelling BioBricks</p></li>
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−
</ul>
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−
<p><strong><em>14:00-17:00:</em></strong></p>
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−
<ul>
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−
<li><p>Attempted to model our Killer BioBrick using RuleBender</p></li>
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−
</ul>
+
−
<p>iGEM Week 1</p>
+
−
<h1 id="th-june-1">24th June</h1>
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−
<p><strong><em>09:30-10:30:</em></strong></p>
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−
<ul>
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−
<li><p>Brexit Breakfast</p></li>
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−
</ul>
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−
<p><strong><em>10:30-11:00:</em></strong></p>
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−
<ul>
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−
<li><p>Check with Jem about Benchling design</p></li>
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−
</ul>
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−
<p><strong><em>11:00-12:00:</em></strong></p>
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−
<ul>
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−
<li><p>Looked at the Action Points, crossed off the ones we had done and assigned people to complete the other action points.</p></li>
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</ul>
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−
<p><strong><em>12:00-17:00:</em></strong></p>
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−
<ul>
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<li><p>Assigned tasks were carried out</p></li>
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−
</ul>
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−
</div>
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</div>
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Latest revision as of 22:11, 19 October 2016


Important Dates



01/05/2016 Team Registration for iGEM deadline

30/06/2016 InterLab Sign-up Deadline

01/07/2016 Project Description Deadline

02/07/2016 European Teams Meet Up in Paris

15/07/2016 About our Lab Form Deadline

15/07/2016 About our Project Form Deadline

28/07/2016 Scottish Teams Meet Up in Edinburgh

12/08/2016 Track Selection Deadline – Foundational Advance

12/08/2016 Title and Abstract Deadline

17/08/2016 – 18/08/2016 UK Teams Meet Up in Westminster, London

25/08/2016 Edinburgh Undergraduate Team Visits Newcastle

31/08/2016 Giant Jamboree Registration Deadline

02/09/2016 InterLab Data Deadline

09/09/2016 Team Rosters Deadline

16/09/2016 Final Safety Form Deadline

07/10/2016 Team Banners Deadline

14/10/2016 Judging Form Deadline

19/10/2016 Wiki Freeze

21/10/2016 Part Submission Deadline

27/10/2016 – 31/10/2016 Giant Jamboree 2016 @ Hynes Convention Center, Boston, MA